data_8GZL # _entry.id 8GZL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8GZL pdb_00008gzl 10.2210/pdb8gzl/pdb WWPDB D_1300032515 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-08-09 2 'Structure model' 1 1 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8GZL _pdbx_database_status.recvd_initial_deposition_date 2022-09-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email ganjhh@fudan.edu.cn _pdbx_contact_author.name_first Jianhua _pdbx_contact_author.name_last Gan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8438-8852 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gan, J.H.' 1 0000-0002-8438-8852 'Liu, H.H.' 2 0000-0001-5633-1333 'Gao, Y.Q.' 3 0000-0002-0989-0631 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 51 _citation.language ? _citation.page_first 4625 _citation.page_last 4636 _citation.title 'Crystal structures and identification of novel Cd2+-specific DNA aptamer.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkad239 _citation.pdbx_database_id_PubMed 37013991 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, H.' 1 ? primary 'Gao, Y.' 2 ? primary 'Mathivanan, J.' 3 ? primary 'Armour-Garb, Z.' 4 ? primary 'Shao, Z.' 5 ? primary 'Zhang, Y.' 6 ? primary 'Zhao, X.' 7 ? primary 'Shao, Q.' 8 ? primary 'Zhang, W.' 9 ? primary 'Yang, J.' 10 ? primary 'Cao, C.' 11 ? primary 'Li, H.' 12 ? primary 'Sheng, J.' 13 0000-0001-6198-390X primary 'Gan, J.' 14 0000-0002-8438-8852 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '25-mer DNA' 7691.934 4 ? ? ? ? 2 non-polymer syn 'CADMIUM ION' 112.411 5 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 4 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DA)(DC)(DG)(DA)(DC)(DG)(DG)(DG)(DT)(DC)(DC)(DA)(DC)(DG)(DG)(DT)(DC)(DC)(DG) (DT)(DT)(DG)(DT)(DC) ; _entity_poly.pdbx_seq_one_letter_code_can GACGACGGGTCCACGGTCCGTTGTC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 'BARIUM ION' BA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DT n 1 11 DC n 1 12 DC n 1 13 DA n 1 14 DC n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DC n 1 19 DC n 1 20 DG n 1 21 DT n 1 22 DT n 1 23 DG n 1 24 DT n 1 25 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 25 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DA 13 13 13 DA DA A . n A 1 14 DC 14 14 14 DC DC A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DC 18 18 18 DC DC A . n A 1 19 DC 19 19 19 DC DC A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DT 21 21 21 DT DT A . n A 1 22 DT 22 22 22 DT DT A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DT 24 24 24 DT DT A . n A 1 25 DC 25 25 25 DC DC A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DA 2 2 2 DA DA B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DC 6 6 6 DC DC B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DT 10 10 10 DT DT B . n B 1 11 DC 11 11 11 DC DC B . n B 1 12 DC 12 12 12 DC DC B . n B 1 13 DA 13 13 13 DA DA B . n B 1 14 DC 14 14 14 DC DC B . n B 1 15 DG 15 15 15 DG DG B . n B 1 16 DG 16 16 16 DG DG B . n B 1 17 DT 17 17 17 DT DT B . n B 1 18 DC 18 18 18 DC DC B . n B 1 19 DC 19 19 19 DC DC B . n B 1 20 DG 20 20 20 DG DG B . n B 1 21 DT 21 21 21 DT DT B . n B 1 22 DT 22 22 22 DT DT B . n B 1 23 DG 23 23 23 DG DG B . n B 1 24 DT 24 24 24 DT DT B . n B 1 25 DC 25 25 25 DC DC B . n C 1 1 DG 1 1 1 DG DG C . n C 1 2 DA 2 2 2 DA DA C . n C 1 3 DC 3 3 3 DC DC C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 DA 5 5 5 DA DA C . n C 1 6 DC 6 6 6 DC DC C . n C 1 7 DG 7 7 7 DG DG C . n C 1 8 DG 8 8 8 DG DG C . n C 1 9 DG 9 9 9 DG DG C . n C 1 10 DT 10 10 10 DT DT C . n C 1 11 DC 11 11 11 DC DC C . n C 1 12 DC 12 12 12 DC DC C . n C 1 13 DA 13 13 13 DA DA C . n C 1 14 DC 14 14 14 DC DC C . n C 1 15 DG 15 15 15 DG DG C . n C 1 16 DG 16 16 16 DG DG C . n C 1 17 DT 17 17 17 DT DT C . n C 1 18 DC 18 18 18 DC DC C . n C 1 19 DC 19 19 19 DC DC C . n C 1 20 DG 20 20 20 DG DG C . n C 1 21 DT 21 21 21 DT DT C . n C 1 22 DT 22 22 22 DT DT C . n C 1 23 DG 23 23 23 DG DG C . n C 1 24 DT 24 24 24 DT DT C . n C 1 25 DC 25 25 25 DC DC C . n D 1 1 DG 1 1 1 DG DG D . n D 1 2 DA 2 2 2 DA DA D . n D 1 3 DC 3 3 3 DC DC D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DA 5 5 5 DA DA D . n D 1 6 DC 6 6 6 DC DC D . n D 1 7 DG 7 7 7 DG DG D . n D 1 8 DG 8 8 8 DG DG D . n D 1 9 DG 9 9 9 DG DG D . n D 1 10 DT 10 10 10 DT DT D . n D 1 11 DC 11 11 11 DC DC D . n D 1 12 DC 12 12 12 DC DC D . n D 1 13 DA 13 13 13 DA DA D . n D 1 14 DC 14 14 14 DC DC D . n D 1 15 DG 15 15 15 DG DG D . n D 1 16 DG 16 16 16 DG DG D . n D 1 17 DT 17 17 17 DT DT D . n D 1 18 DC 18 18 18 DC DC D . n D 1 19 DC 19 19 19 DC DC D . n D 1 20 DG 20 20 20 DG DG D . n D 1 21 DT 21 21 21 DT DT D . n D 1 22 DT 22 22 22 DT DT D . n D 1 23 DG 23 23 23 DG DG D . n D 1 24 DT 24 24 24 DT DT D . n D 1 25 DC 25 25 25 DC DC D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CD 1 101 1 CD CD A . F 2 CD 1 102 4 CD CD A . G 3 BA 1 103 2 BA BA A . H 2 CD 1 101 2 CD CD B . I 3 BA 1 102 1 BA BA B . J 2 CD 1 101 3 CD CD C . K 2 CD 1 101 5 CD CD D . L 4 HOH 1 201 1 HOH HOH A . M 4 HOH 1 201 2 HOH HOH C . M 4 HOH 2 202 3 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.29 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.1_4122 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 92.870 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8GZL _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.800 _cell.length_a_esd ? _cell.length_b 45.690 _cell.length_b_esd ? _cell.length_c 147.020 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8GZL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8GZL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.92 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '45% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-05-01 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 86.510 _reflns.entry_id 8GZL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.000 _reflns.d_resolution_low 29.370 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6161 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 84.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.900 _reflns.pdbx_Rmerge_I_obs 0.106 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 46 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.118 _reflns.pdbx_Rpim_I_all 0.051 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 30010 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 3.000 3.180 ? ? 4096 ? ? ? 935 81.700 ? ? ? ? 0.459 ? ? ? ? ? ? ? ? 4.400 ? ? ? 1.800 0.518 0.233 ? 1 1 0.976 ? ? ? ? ? ? ? ? ? ? 9.000 29.370 ? ? 1249 ? ? ? 259 91.300 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 4.800 ? ? ? 16.600 0.065 0.030 ? 2 1 0.997 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 188.030 _refine.B_iso_mean 95.6236 _refine.B_iso_min 30.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8GZL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.0000 _refine.ls_d_res_low 29.3700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5953 _refine.ls_number_reflns_R_free 301 _refine.ls_number_reflns_R_work 5652 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 81.5800 _refine.ls_percent_reflns_R_free 5.0600 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2362 _refine.ls_R_factor_R_free 0.2841 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2334 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 8GZJ _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 40.2300 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 3.0000 _refine_hist.d_res_low 29.3700 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 2049 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 101 _refine_hist.pdbx_B_iso_mean_ligand 110.39 _refine_hist.pdbx_B_iso_mean_solvent 30.00 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2040 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' 1 ? ? ? ? ? 1 TORSIONAL ? A 984 17.078 ? 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 2 TORSIONAL ? B 984 17.078 ? 1 'X-RAY DIFFRACTION' 3 ? ? ? ? ? 3 TORSIONAL ? C 984 17.078 ? 1 'X-RAY DIFFRACTION' 4 ? ? ? ? ? 4 TORSIONAL ? D 984 17.078 ? 1 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.0000 3.7800 2767 . 140 2627 76.0000 . . . 0.4537 0.0000 0.3415 . . . . . . . 2 . . . 'X-RAY DIFFRACTION' 3.7800 29.3700 3186 . 161 3025 87.0000 . . . 0.2387 0.0000 0.2037 . . . . . . . 2 . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 'chain A' 1 2 'chain B' 1 3 'chain C' 1 4 'chain D' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A DG 1 . A DC 25 . A DG 1 A DC 25 ? 'chain A' 1 2 1 B DG 1 . B DC 25 . B DG 1 B DC 25 ? 'chain B' 1 3 1 C DG 1 . C DC 25 . C DG 1 C DC 25 ? 'chain C' 1 4 1 D DG 1 . D DC 25 . D DG 1 D DC 25 ? 'chain D' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 8GZL _struct.title 'Crystal structure of Cd2+-bound DNA aptamer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8GZL _struct_keywords.text 'DNA aptamer, Cd2+-binding, complex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 2 ? I N N 3 ? J N N 2 ? K N N 2 ? L N N 4 ? M N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8GZL _struct_ref.pdbx_db_accession 8GZL _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8GZL A 1 ? 25 ? 8GZL 1 ? 25 ? 1 25 2 1 8GZL B 1 ? 25 ? 8GZL 1 ? 25 ? 1 25 3 1 8GZL C 1 ? 25 ? 8GZL 1 ? 25 ? 1 25 4 1 8GZL D 1 ? 25 ? 8GZL 1 ? 25 ? 1 25 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 4 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 250 ? 1 MORE -12 ? 1 'SSA (A^2)' 4860 ? 2 'ABSA (A^2)' 250 ? 2 MORE -12 ? 2 'SSA (A^2)' 4800 ? 3 'ABSA (A^2)' 120 ? 3 MORE -9 ? 3 'SSA (A^2)' 4780 ? 4 'ABSA (A^2)' 120 ? 4 MORE -8 ? 4 'SSA (A^2)' 4730 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,F,G,L 2 1 B,H,I 3 1 C,J,M 4 1 D,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 9 N7 ? ? ? 1_555 E CD . CD ? ? A DG 9 A CD 101 1_555 ? ? ? ? ? ? ? 2.655 ? ? metalc2 metalc ? ? A DC 11 OP2 ? ? ? 1_555 F CD . CD ? ? A DC 11 A CD 102 1_555 ? ? ? ? ? ? ? 2.545 ? ? metalc3 metalc ? ? A DC 12 N3 ? ? ? 1_555 E CD . CD ? ? A DC 12 A CD 101 1_555 ? ? ? ? ? ? ? 2.644 ? ? metalc4 metalc ? ? A DG 16 N7 ? ? ? 1_555 E CD . CD ? ? A DG 16 A CD 101 1_555 ? ? ? ? ? ? ? 2.665 ? ? metalc5 metalc ? ? E CD . CD ? ? ? 1_555 L HOH . O ? ? A CD 101 A HOH 201 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc6 metalc ? ? F CD . CD ? ? ? 2_555 C DC 11 OP2 ? ? A CD 102 C DC 11 1_555 ? ? ? ? ? ? ? 2.585 ? ? metalc7 metalc ? ? F CD . CD ? ? ? 1_555 M HOH . O ? ? A CD 102 C HOH 201 2_545 ? ? ? ? ? ? ? 2.648 ? ? metalc8 metalc ? ? B DG 9 N7 ? ? ? 1_555 H CD . CD ? ? B DG 9 B CD 101 1_555 ? ? ? ? ? ? ? 2.657 ? ? metalc9 metalc ? ? B DC 12 N3 ? ? ? 1_555 H CD . CD ? ? B DC 12 B CD 101 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc10 metalc ? ? B DG 16 N7 ? ? ? 1_555 H CD . CD ? ? B DG 16 B CD 101 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc11 metalc ? ? C DG 9 N7 ? ? ? 1_555 J CD . CD ? ? C DG 9 C CD 101 1_555 ? ? ? ? ? ? ? 2.460 ? ? metalc12 metalc ? ? C DC 12 N3 ? ? ? 1_555 J CD . CD ? ? C DC 12 C CD 101 1_555 ? ? ? ? ? ? ? 2.518 ? ? metalc13 metalc ? ? J CD . CD ? ? ? 1_555 M HOH . O ? ? C CD 101 C HOH 202 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc14 metalc ? ? D DC 12 N3 ? ? ? 1_555 K CD . CD ? ? D DC 12 D CD 101 1_555 ? ? ? ? ? ? ? 2.692 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 25 N3 ? ? A DG 1 A DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 25 O2 ? ? A DG 1 A DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 25 N4 ? ? A DG 1 A DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 A DT 24 N3 ? ? A DA 2 A DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DT 24 O4 ? ? A DA 2 A DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 23 N1 ? ? A DC 3 A DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 23 O6 ? ? A DC 3 A DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 23 N2 ? ? A DC 3 A DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DT 22 O2 ? ? A DG 4 A DT 22 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 21 N3 ? ? A DA 5 A DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 21 O4 ? ? A DA 5 A DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 20 N1 ? ? A DC 6 A DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 20 O6 ? ? A DC 6 A DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 20 N2 ? ? A DC 6 A DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 19 N3 ? ? A DG 7 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 19 O2 ? ? A DG 7 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 19 N4 ? ? A DG 7 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 18 N3 ? ? A DG 8 A DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 18 O2 ? ? A DG 8 A DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 18 N4 ? ? A DG 8 A DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 15 N1 ? ? A DC 11 A DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 15 O6 ? ? A DC 11 A DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 15 N2 ? ? A DC 11 A DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 16 O6 ? ? A DC 12 A DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog25 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DC 25 N3 ? ? B DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DC 25 O2 ? ? B DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DC 25 N4 ? ? B DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 2 N1 ? ? ? 1_555 B DT 24 N3 ? ? B DA 2 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 2 N6 ? ? ? 1_555 B DT 24 O4 ? ? B DA 2 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 3 N3 ? ? ? 1_555 B DG 23 N1 ? ? B DC 3 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 3 N4 ? ? ? 1_555 B DG 23 O6 ? ? B DC 3 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 3 O2 ? ? ? 1_555 B DG 23 N2 ? ? B DC 3 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DT 22 O2 ? ? B DG 4 B DT 22 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog34 hydrog ? ? B DA 5 N1 ? ? ? 1_555 B DT 21 N3 ? ? B DA 5 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 5 N6 ? ? ? 1_555 B DT 21 O4 ? ? B DA 5 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DC 6 N3 ? ? ? 1_555 B DG 20 N1 ? ? B DC 6 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DC 6 N4 ? ? ? 1_555 B DG 20 O6 ? ? B DC 6 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DC 6 O2 ? ? ? 1_555 B DG 20 N2 ? ? B DC 6 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DG 7 N1 ? ? ? 1_555 B DC 19 N3 ? ? B DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DG 7 N2 ? ? ? 1_555 B DC 19 O2 ? ? B DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DG 7 O6 ? ? ? 1_555 B DC 19 N4 ? ? B DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DC 18 N3 ? ? B DG 8 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DC 18 O2 ? ? B DG 8 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DG 8 O6 ? ? ? 1_555 B DC 18 N4 ? ? B DG 8 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DC 11 N3 ? ? ? 1_555 B DG 15 N1 ? ? B DC 11 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DC 11 N4 ? ? ? 1_555 B DG 15 O6 ? ? B DC 11 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DC 11 O2 ? ? ? 1_555 B DG 15 N2 ? ? B DC 11 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DC 12 N4 ? ? ? 1_555 B DG 16 O6 ? ? B DC 12 B DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog49 hydrog ? ? C DG 1 N1 ? ? ? 1_555 C DC 25 N3 ? ? C DG 1 C DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 1 N2 ? ? ? 1_555 C DC 25 O2 ? ? C DG 1 C DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DG 1 O6 ? ? ? 1_555 C DC 25 N4 ? ? C DG 1 C DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DA 2 N1 ? ? ? 1_555 C DT 24 N3 ? ? C DA 2 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DA 2 N6 ? ? ? 1_555 C DT 24 O4 ? ? C DA 2 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 3 N3 ? ? ? 1_555 C DG 23 N1 ? ? C DC 3 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DC 3 N4 ? ? ? 1_555 C DG 23 O6 ? ? C DC 3 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DC 3 O2 ? ? ? 1_555 C DG 23 N2 ? ? C DC 3 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DG 4 N2 ? ? ? 1_555 C DT 22 O2 ? ? C DG 4 C DT 22 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog58 hydrog ? ? C DA 5 N1 ? ? ? 1_555 C DT 21 N3 ? ? C DA 5 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DA 5 N6 ? ? ? 1_555 C DT 21 O4 ? ? C DA 5 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DC 6 N3 ? ? ? 1_555 C DG 20 N1 ? ? C DC 6 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C DC 6 N4 ? ? ? 1_555 C DG 20 O6 ? ? C DC 6 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C DC 6 O2 ? ? ? 1_555 C DG 20 N2 ? ? C DC 6 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C DG 7 N1 ? ? ? 1_555 C DC 19 N3 ? ? C DG 7 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C DG 7 N2 ? ? ? 1_555 C DC 19 O2 ? ? C DG 7 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C DG 7 O6 ? ? ? 1_555 C DC 19 N4 ? ? C DG 7 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C DG 8 N1 ? ? ? 1_555 C DC 18 N3 ? ? C DG 8 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C DG 8 N2 ? ? ? 1_555 C DC 18 O2 ? ? C DG 8 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C DG 8 O6 ? ? ? 1_555 C DC 18 N4 ? ? C DG 8 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C DC 11 N3 ? ? ? 1_555 C DG 15 N1 ? ? C DC 11 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C DC 11 N4 ? ? ? 1_555 C DG 15 O6 ? ? C DC 11 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C DC 11 O2 ? ? ? 1_555 C DG 15 N2 ? ? C DC 11 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C DC 12 N4 ? ? ? 1_555 C DG 16 O6 ? ? C DC 12 C DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog73 hydrog ? ? D DG 1 N1 ? ? ? 1_555 D DC 25 N3 ? ? D DG 1 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? D DG 1 N2 ? ? ? 1_555 D DC 25 O2 ? ? D DG 1 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? D DG 1 O6 ? ? ? 1_555 D DC 25 N4 ? ? D DG 1 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? D DA 2 N1 ? ? ? 1_555 D DT 24 N3 ? ? D DA 2 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? D DA 2 N6 ? ? ? 1_555 D DT 24 O4 ? ? D DA 2 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? D DC 3 N3 ? ? ? 1_555 D DG 23 N1 ? ? D DC 3 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? D DC 3 N4 ? ? ? 1_555 D DG 23 O6 ? ? D DC 3 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? D DC 3 O2 ? ? ? 1_555 D DG 23 N2 ? ? D DC 3 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? D DG 4 N2 ? ? ? 1_555 D DT 22 O2 ? ? D DG 4 D DT 22 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog82 hydrog ? ? D DA 5 N1 ? ? ? 1_555 D DT 21 N3 ? ? D DA 5 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? D DA 5 N6 ? ? ? 1_555 D DT 21 O4 ? ? D DA 5 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? D DC 6 N3 ? ? ? 1_555 D DG 20 N1 ? ? D DC 6 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? D DC 6 N4 ? ? ? 1_555 D DG 20 O6 ? ? D DC 6 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? D DC 6 O2 ? ? ? 1_555 D DG 20 N2 ? ? D DC 6 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? D DG 7 N1 ? ? ? 1_555 D DC 19 N3 ? ? D DG 7 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? D DG 7 N2 ? ? ? 1_555 D DC 19 O2 ? ? D DG 7 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? D DG 7 O6 ? ? ? 1_555 D DC 19 N4 ? ? D DG 7 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? D DG 8 N1 ? ? ? 1_555 D DC 18 N3 ? ? D DG 8 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? D DG 8 N2 ? ? ? 1_555 D DC 18 O2 ? ? D DG 8 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? D DG 8 O6 ? ? ? 1_555 D DC 18 N4 ? ? D DG 8 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? D DC 11 N3 ? ? ? 1_555 D DG 15 N1 ? ? D DC 11 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? D DC 11 N4 ? ? ? 1_555 D DG 15 O6 ? ? D DC 11 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? D DC 11 O2 ? ? ? 1_555 D DG 15 N2 ? ? D DC 11 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? D DC 12 N4 ? ? ? 1_555 D DG 16 O6 ? ? D DC 12 D DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 9 ? A DG 9 ? 1_555 CD ? E CD . ? A CD 101 ? 1_555 N3 ? A DC 12 ? A DC 12 ? 1_555 74.6 ? 2 N7 ? A DG 9 ? A DG 9 ? 1_555 CD ? E CD . ? A CD 101 ? 1_555 N7 ? A DG 16 ? A DG 16 ? 1_555 95.1 ? 3 N3 ? A DC 12 ? A DC 12 ? 1_555 CD ? E CD . ? A CD 101 ? 1_555 N7 ? A DG 16 ? A DG 16 ? 1_555 121.8 ? 4 N7 ? A DG 9 ? A DG 9 ? 1_555 CD ? E CD . ? A CD 101 ? 1_555 O ? L HOH . ? A HOH 201 ? 1_555 165.0 ? 5 N3 ? A DC 12 ? A DC 12 ? 1_555 CD ? E CD . ? A CD 101 ? 1_555 O ? L HOH . ? A HOH 201 ? 1_555 104.9 ? 6 N7 ? A DG 16 ? A DG 16 ? 1_555 CD ? E CD . ? A CD 101 ? 1_555 O ? L HOH . ? A HOH 201 ? 1_555 72.3 ? 7 OP2 ? A DC 11 ? A DC 11 ? 1_555 CD ? F CD . ? A CD 102 ? 1_555 OP2 ? C DC 11 ? C DC 11 ? 1_555 119.4 ? 8 OP2 ? A DC 11 ? A DC 11 ? 1_555 CD ? F CD . ? A CD 102 ? 1_555 O ? M HOH . ? C HOH 201 ? 2_545 77.8 ? 9 OP2 ? C DC 11 ? C DC 11 ? 1_555 CD ? F CD . ? A CD 102 ? 1_555 O ? M HOH . ? C HOH 201 ? 2_545 62.0 ? 10 N7 ? B DG 9 ? B DG 9 ? 1_555 CD ? H CD . ? B CD 101 ? 1_555 N3 ? B DC 12 ? B DC 12 ? 1_555 82.6 ? 11 N7 ? B DG 9 ? B DG 9 ? 1_555 CD ? H CD . ? B CD 101 ? 1_555 N7 ? B DG 16 ? B DG 16 ? 1_555 96.6 ? 12 N3 ? B DC 12 ? B DC 12 ? 1_555 CD ? H CD . ? B CD 101 ? 1_555 N7 ? B DG 16 ? B DG 16 ? 1_555 114.5 ? 13 N7 ? C DG 9 ? C DG 9 ? 1_555 CD ? J CD . ? C CD 101 ? 1_555 N3 ? C DC 12 ? C DC 12 ? 1_555 81.8 ? 14 N7 ? C DG 9 ? C DG 9 ? 1_555 CD ? J CD . ? C CD 101 ? 1_555 O ? M HOH . ? C HOH 202 ? 1_555 145.9 ? 15 N3 ? C DC 12 ? C DC 12 ? 1_555 CD ? J CD . ? C CD 101 ? 1_555 O ? M HOH . ? C HOH 202 ? 1_555 117.9 ? # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 4.7191 _pdbx_refine_tls.origin_y 9.3045 _pdbx_refine_tls.origin_z 38.6643 _pdbx_refine_tls.T[1][1] 0.9686 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.3438 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.1401 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.8816 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0861 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.7641 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] -0.2476 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.5282 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.1581 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] -0.1034 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.0017 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.1747 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.1135 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0521 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.0457 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.1996 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0889 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0472 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.8263 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.1028 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0092 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? ? A 25 ? ? all 2 'X-RAY DIFFRACTION' 1 ? ? B 1 ? ? ? B 25 ? ? all 3 'X-RAY DIFFRACTION' 1 ? ? C 1 ? ? ? C 25 ? ? all 4 'X-RAY DIFFRACTION' 1 ? ? D 1 ? ? ? D 25 ? ? all 5 'X-RAY DIFFRACTION' 1 ? ? E 1 ? ? ? E 5 ? ? all 6 'X-RAY DIFFRACTION' 1 ? ? F 1 ? ? ? F 2 ? ? all 7 'X-RAY DIFFRACTION' 1 ? ? G 1 ? ? ? G 3 ? ? all # _pdbx_entry_details.entry_id 8GZL _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 CD CD CD N N 2 DA OP3 O N N 3 DA P P N N 4 DA OP1 O N N 5 DA OP2 O N N 6 DA "O5'" O N N 7 DA "C5'" C N N 8 DA "C4'" C N R 9 DA "O4'" O N N 10 DA "C3'" C N S 11 DA "O3'" O N N 12 DA "C2'" C N N 13 DA "C1'" C N R 14 DA N9 N Y N 15 DA C8 C Y N 16 DA N7 N Y N 17 DA C5 C Y N 18 DA C6 C Y N 19 DA N6 N N N 20 DA N1 N Y N 21 DA C2 C Y N 22 DA N3 N Y N 23 DA C4 C Y N 24 DA HOP3 H N N 25 DA HOP2 H N N 26 DA "H5'" H N N 27 DA "H5''" H N N 28 DA "H4'" H N N 29 DA "H3'" H N N 30 DA "HO3'" H N N 31 DA "H2'" H N N 32 DA "H2''" H N N 33 DA "H1'" H N N 34 DA H8 H N N 35 DA H61 H N N 36 DA H62 H N N 37 DA H2 H N N 38 DC OP3 O N N 39 DC P P N N 40 DC OP1 O N N 41 DC OP2 O N N 42 DC "O5'" O N N 43 DC "C5'" C N N 44 DC "C4'" C N R 45 DC "O4'" O N N 46 DC "C3'" C N S 47 DC "O3'" O N N 48 DC "C2'" C N N 49 DC "C1'" C N R 50 DC N1 N N N 51 DC C2 C N N 52 DC O2 O N N 53 DC N3 N N N 54 DC C4 C N N 55 DC N4 N N N 56 DC C5 C N N 57 DC C6 C N N 58 DC HOP3 H N N 59 DC HOP2 H N N 60 DC "H5'" H N N 61 DC "H5''" H N N 62 DC "H4'" H N N 63 DC "H3'" H N N 64 DC "HO3'" H N N 65 DC "H2'" H N N 66 DC "H2''" H N N 67 DC "H1'" H N N 68 DC H41 H N N 69 DC H42 H N N 70 DC H5 H N N 71 DC H6 H N N 72 DG OP3 O N N 73 DG P P N N 74 DG OP1 O N N 75 DG OP2 O N N 76 DG "O5'" O N N 77 DG "C5'" C N N 78 DG "C4'" C N R 79 DG "O4'" O N N 80 DG "C3'" C N S 81 DG "O3'" O N N 82 DG "C2'" C N N 83 DG "C1'" C N R 84 DG N9 N Y N 85 DG C8 C Y N 86 DG N7 N Y N 87 DG C5 C Y N 88 DG C6 C N N 89 DG O6 O N N 90 DG N1 N N N 91 DG C2 C N N 92 DG N2 N N N 93 DG N3 N N N 94 DG C4 C Y N 95 DG HOP3 H N N 96 DG HOP2 H N N 97 DG "H5'" H N N 98 DG "H5''" H N N 99 DG "H4'" H N N 100 DG "H3'" H N N 101 DG "HO3'" H N N 102 DG "H2'" H N N 103 DG "H2''" H N N 104 DG "H1'" H N N 105 DG H8 H N N 106 DG H1 H N N 107 DG H21 H N N 108 DG H22 H N N 109 DT OP3 O N N 110 DT P P N N 111 DT OP1 O N N 112 DT OP2 O N N 113 DT "O5'" O N N 114 DT "C5'" C N N 115 DT "C4'" C N R 116 DT "O4'" O N N 117 DT "C3'" C N S 118 DT "O3'" O N N 119 DT "C2'" C N N 120 DT "C1'" C N R 121 DT N1 N N N 122 DT C2 C N N 123 DT O2 O N N 124 DT N3 N N N 125 DT C4 C N N 126 DT O4 O N N 127 DT C5 C N N 128 DT C7 C N N 129 DT C6 C N N 130 DT HOP3 H N N 131 DT HOP2 H N N 132 DT "H5'" H N N 133 DT "H5''" H N N 134 DT "H4'" H N N 135 DT "H3'" H N N 136 DT "HO3'" H N N 137 DT "H2'" H N N 138 DT "H2''" H N N 139 DT "H1'" H N N 140 DT H3 H N N 141 DT H71 H N N 142 DT H72 H N N 143 DT H73 H N N 144 DT H6 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8GZL 'double helix' 8GZL 'parallel strands' 8GZL 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 11 1_555 A DG 15 1_555 -0.784 -0.057 0.586 -15.159 -15.843 -5.312 1 A_DC11:DG15_A A 11 ? A 15 ? 19 1 1 A DC 12 1_555 A DG 16 1_555 -0.296 4.010 -0.324 25.799 -2.443 -100.016 2 A_DC12:DG16_A A 12 ? A 16 ? ? ? 1 A DG 8 1_555 A DC 18 1_555 0.253 0.229 0.358 17.701 -15.884 2.904 3 A_DG8:DC18_A A 8 ? A 18 ? 19 1 1 A DG 7 1_555 A DC 19 1_555 -0.677 -0.188 -0.352 9.990 11.568 0.934 4 A_DG7:DC19_A A 7 ? A 19 ? 19 1 1 A DC 6 1_555 A DG 20 1_555 0.560 0.057 0.362 1.246 -14.772 -0.666 5 A_DC6:DG20_A A 6 ? A 20 ? 19 1 1 A DA 5 1_555 A DT 21 1_555 0.132 0.152 0.631 4.504 -14.842 2.583 6 A_DA5:DT21_A A 5 ? A 21 ? 20 1 1 A DG 4 1_555 A DT 22 1_555 0.139 0.160 0.636 5.637 -18.676 -2.590 7 A_DG4:DT22_A A 4 ? A 22 ? ? ? 1 A DC 3 1_555 A DG 23 1_555 -0.025 -0.116 0.823 -4.869 -9.626 0.520 8 A_DC3:DG23_A A 3 ? A 23 ? 19 1 1 A DA 2 1_555 A DT 24 1_555 -0.267 0.121 0.529 -2.544 -7.447 -4.754 9 A_DA2:DT24_A A 2 ? A 24 ? 20 1 1 A DG 1 1_555 A DC 25 1_555 -0.545 0.041 0.060 0.277 -12.502 -2.624 10 A_DG1:DC25_A A 1 ? A 25 ? 19 1 1 B DC 25 1_555 B DG 1 1_555 0.438 -0.013 -0.010 -0.389 -11.617 -3.771 11 B_DC25:DG1_B B 25 ? B 1 ? 19 1 1 B DT 24 1_555 B DA 2 1_555 0.327 0.064 0.143 5.292 -9.248 -6.401 12 B_DT24:DA2_B B 24 ? B 2 ? 20 1 1 B DG 23 1_555 B DC 3 1_555 0.052 -0.132 0.704 4.798 -8.391 -0.158 13 B_DG23:DC3_B B 23 ? B 3 ? 19 1 1 B DT 22 1_555 B DG 4 1_555 -0.278 0.180 0.355 -5.068 -17.332 -3.776 14 B_DT22:DG4_B B 22 ? B 4 ? ? ? 1 B DT 21 1_555 B DA 5 1_555 -0.151 0.225 0.617 -5.401 -16.121 1.879 15 B_DT21:DA5_B B 21 ? B 5 ? 20 1 1 B DG 20 1_555 B DC 6 1_555 -0.483 0.127 0.155 4.812 -19.549 -6.685 16 B_DG20:DC6_B B 20 ? B 6 ? 19 1 1 B DC 19 1_555 B DG 7 1_555 0.461 -0.110 -0.277 -6.621 -1.638 4.919 17 B_DC19:DG7_B B 19 ? B 7 ? 19 1 1 B DC 18 1_555 B DG 8 1_555 -0.241 0.211 0.365 -20.264 -18.357 -4.571 18 B_DC18:DG8_B B 18 ? B 8 ? 19 1 1 B DG 16 1_555 B DC 12 1_555 0.396 -3.935 0.962 -29.355 3.892 99.971 19 B_DG16:DC12_B B 16 ? B 12 ? ? ? 1 B DC 11 1_555 B DG 15 1_555 -0.530 0.163 0.811 -27.129 -10.456 -1.716 20 B_DC11:DG15_B B 11 ? B 15 ? 19 1 1 C DC 11 1_555 C DG 15 1_555 -0.802 -0.151 0.526 -14.820 -13.826 -6.211 21 C_DC11:DG15_C C 11 ? C 15 ? 19 1 1 C DC 12 1_555 C DG 16 1_555 -0.371 3.822 -0.232 27.971 -4.274 -106.866 22 C_DC12:DG16_C C 12 ? C 16 ? ? ? 1 C DG 8 1_555 C DC 18 1_555 0.327 0.503 0.191 14.913 -14.097 2.085 23 C_DG8:DC18_C C 8 ? C 18 ? 19 1 1 C DG 7 1_555 C DC 19 1_555 -0.089 -0.219 -0.716 1.785 0.640 -2.476 24 C_DG7:DC19_C C 7 ? C 19 ? 19 1 1 C DC 6 1_555 C DG 20 1_555 0.586 0.098 0.357 2.063 -13.099 0.932 25 C_DC6:DG20_C C 6 ? C 20 ? 19 1 1 C DA 5 1_555 C DT 21 1_555 0.161 0.259 0.646 5.007 -13.795 5.018 26 C_DA5:DT21_C C 5 ? C 21 ? 20 1 1 C DG 4 1_555 C DT 22 1_555 -0.008 0.188 0.329 2.847 -18.123 -0.408 27 C_DG4:DT22_C C 4 ? C 22 ? ? ? 1 C DC 3 1_555 C DG 23 1_555 0.091 -0.070 0.894 -6.536 -4.419 3.349 28 C_DC3:DG23_C C 3 ? C 23 ? 19 1 1 C DA 2 1_555 C DT 24 1_555 -0.307 0.082 0.691 -6.246 -3.724 -1.942 29 C_DA2:DT24_C C 2 ? C 24 ? 20 1 1 C DG 1 1_555 C DC 25 1_555 -0.808 0.026 0.411 -1.719 -12.644 0.095 30 C_DG1:DC25_C C 1 ? C 25 ? 19 1 1 D DG 15 1_555 D DC 11 1_555 0.572 0.088 0.808 27.407 -10.561 -3.674 31 D_DG15:DC11_D D 15 ? D 11 ? 19 1 1 D DG 16 1_555 D DC 12 1_555 0.623 -3.970 0.433 -29.961 7.133 105.269 32 D_DG16:DC12_D D 16 ? D 12 ? ? ? 1 D DC 18 1_555 D DG 8 1_555 0.046 0.307 0.606 -23.666 -18.556 -5.338 33 D_DC18:DG8_D D 18 ? D 8 ? 19 1 1 D DC 19 1_555 D DG 7 1_555 0.500 -0.115 -0.110 -10.047 -0.954 5.360 34 D_DC19:DG7_D D 19 ? D 7 ? 19 1 1 D DG 20 1_555 D DC 6 1_555 -0.601 -0.156 0.351 6.803 -20.872 -4.721 35 D_DG20:DC6_D D 20 ? D 6 ? 19 1 1 D DT 21 1_555 D DA 5 1_555 -0.114 0.071 0.539 -2.724 -11.847 2.046 36 D_DT21:DA5_D D 21 ? D 5 ? 20 1 1 D DT 22 1_555 D DG 4 1_555 -0.015 0.170 0.567 -3.922 -18.782 -0.210 37 D_DT22:DG4_D D 22 ? D 4 ? ? ? 1 D DG 23 1_555 D DC 3 1_555 0.001 -0.101 0.848 7.560 -8.347 2.490 38 D_DG23:DC3_D D 23 ? D 3 ? 19 1 1 D DT 24 1_555 D DA 2 1_555 0.286 0.070 0.541 7.467 -1.834 -3.123 39 D_DT24:DA2_D D 24 ? D 2 ? 20 1 1 D DC 25 1_555 D DG 1 1_555 0.359 -0.059 0.469 9.420 -7.933 4.789 40 D_DC25:DG1_D D 25 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 11 1_555 A DG 15 1_555 A DC 12 1_555 A DG 16 1_555 -1.109 -0.081 -6.406 35.617 21.024 82.715 0.820 -0.707 -6.317 15.117 -25.609 90.786 1 AA_DC11DC12:DG16DG15_AA A 11 ? A 15 ? A 12 ? A 16 ? 1 A DC 12 1_555 A DG 16 1_555 A DG 8 1_555 A DC 18 1_555 -0.943 -3.774 -3.668 -3.694 0.421 -121.795 2.163 -0.502 -3.677 -0.241 -2.114 -121.829 2 AA_DC12DG8:DC18DG16_AA A 12 ? A 16 ? A 8 ? A 18 ? 1 A DG 8 1_555 A DC 18 1_555 A DG 7 1_555 A DC 19 1_555 0.650 -0.553 -3.261 5.365 -3.199 -33.292 0.424 0.233 -3.359 5.524 9.262 -33.857 3 AA_DG8DG7:DC19DC18_AA A 8 ? A 18 ? A 7 ? A 19 ? 1 A DG 7 1_555 A DC 19 1_555 A DC 6 1_555 A DG 20 1_555 -0.862 -0.949 -3.235 -8.626 -5.659 -27.660 0.587 0.253 -3.464 11.349 -17.298 -29.487 4 AA_DG7DC6:DG20DC19_AA A 7 ? A 19 ? A 6 ? A 20 ? 1 A DC 6 1_555 A DG 20 1_555 A DA 5 1_555 A DT 21 1_555 0.191 0.810 -3.391 1.165 1.633 -34.312 -1.105 0.133 -3.429 -2.764 1.973 -34.368 5 AA_DC6DA5:DT21DG20_AA A 6 ? A 20 ? A 5 ? A 21 ? 1 A DA 5 1_555 A DT 21 1_555 A DG 4 1_555 A DT 22 1_555 0.525 0.153 -3.211 3.398 -1.280 -39.072 -0.379 0.381 -3.237 1.909 5.067 -39.234 6 AA_DA5DG4:DT22DT21_AA A 5 ? A 21 ? A 4 ? A 22 ? 1 A DG 4 1_555 A DT 22 1_555 A DC 3 1_555 A DG 23 1_555 0.105 -0.121 -3.135 -3.231 0.790 -37.554 0.285 0.563 -3.113 -1.224 -5.007 -37.696 7 AA_DG4DC3:DG23DT22_AA A 4 ? A 22 ? A 3 ? A 23 ? 1 A DC 3 1_555 A DG 23 1_555 A DA 2 1_555 A DT 24 1_555 -0.345 0.785 -3.401 2.451 -2.211 -33.712 -1.713 -0.999 -3.312 3.802 4.214 -33.868 8 AA_DC3DA2:DT24DG23_AA A 3 ? A 23 ? A 2 ? A 24 ? 1 A DA 2 1_555 A DT 24 1_555 A DG 1 1_555 A DC 25 1_555 0.537 0.254 -3.154 4.777 -1.383 -35.803 -0.600 0.210 -3.185 2.236 7.725 -36.135 9 AA_DA2DG1:DC25DT24_AA A 2 ? A 24 ? A 1 ? A 25 ? 1 A DG 1 1_555 A DC 25 1_555 B DC 25 1_555 B DG 1 1_555 -0.245 -0.721 -3.623 0.486 8.391 33.004 0.288 0.330 -3.694 14.480 -0.839 34.028 10 AB_DG1DC25:DG1DC25_BA A 1 ? A 25 ? B 25 ? B 1 ? 1 B DC 25 1_555 B DG 1 1_555 B DT 24 1_555 B DA 2 1_555 -0.593 0.251 -3.307 -3.242 -2.073 -35.514 -0.714 -0.491 -3.327 3.386 -5.296 -35.716 11 BB_DC25DT24:DA2DG1_BB B 25 ? B 1 ? B 24 ? B 2 ? 1 B DT 24 1_555 B DA 2 1_555 B DG 23 1_555 B DC 3 1_555 0.390 0.694 -3.202 -3.672 -3.024 -34.156 -1.624 1.208 -3.074 5.117 -6.215 -34.475 12 BB_DT24DG23:DC3DA2_BB B 24 ? B 2 ? B 23 ? B 3 ? 1 B DG 23 1_555 B DC 3 1_555 B DT 22 1_555 B DG 4 1_555 -0.099 -0.267 -3.249 4.467 1.045 -38.415 0.530 -0.693 -3.210 -1.581 6.759 -38.677 13 BB_DG23DT22:DG4DC3_BB B 23 ? B 3 ? B 22 ? B 4 ? 1 B DT 22 1_555 B DG 4 1_555 B DT 21 1_555 B DA 5 1_555 -0.509 0.073 -3.125 -4.093 -1.631 -38.011 -0.309 -0.282 -3.155 2.494 -6.259 -38.256 14 BB_DT22DT21:DA5DG4_BB B 22 ? B 4 ? B 21 ? B 5 ? 1 B DT 21 1_555 B DA 5 1_555 B DG 20 1_555 B DC 6 1_555 -0.293 0.795 -3.629 1.248 3.174 -35.577 -0.782 -0.679 -3.672 -5.180 2.036 -35.735 15 BB_DT21DG20:DC6DA5_BB B 21 ? B 5 ? B 20 ? B 6 ? 1 B DG 20 1_555 B DC 6 1_555 B DC 19 1_555 B DG 7 1_555 1.054 -1.184 -3.261 6.926 -3.296 -29.963 1.549 0.564 -3.518 6.247 13.127 -30.907 16 BB_DG20DC19:DG7DC6_BB B 20 ? B 6 ? B 19 ? B 7 ? 1 B DC 19 1_555 B DG 7 1_555 B DC 18 1_555 B DG 8 1_555 -0.735 -0.397 -3.082 -6.306 -0.996 -31.159 0.549 -0.225 -3.177 1.830 -11.587 -31.791 17 BB_DC19DC18:DG8DG7_BB B 19 ? B 7 ? B 18 ? B 8 ? 1 B DC 18 1_555 B DG 8 1_555 B DG 16 1_555 B DC 12 1_555 3.585 0.947 -3.932 -80.595 150.527 6.744 2.567 -0.678 -1.088 79.102 42.353 170.761 18 BB_DC18DG16:DC12DG8_BB B 18 ? B 8 ? B 16 ? B 12 ? 1 B DG 16 1_555 B DC 12 1_555 B DC 11 1_555 B DG 15 1_555 1.245 0.120 6.784 -38.714 -13.445 -81.761 0.526 -0.879 6.745 9.752 -28.081 -89.817 19 BB_DG16DC11:DG15DC12_BB B 16 ? B 12 ? B 11 ? B 15 ? 1 C DC 11 1_555 C DG 15 1_555 C DC 12 1_555 C DG 16 1_555 -1.213 0.236 -6.290 35.344 19.426 84.749 0.928 -0.548 -6.220 13.769 -25.051 92.189 20 CC_DC11DC12:DG16DG15_CC C 11 ? C 15 ? C 12 ? C 16 ? 1 C DC 12 1_555 C DG 16 1_555 C DG 8 1_555 C DC 18 1_555 -1.216 -4.049 -3.566 -2.978 1.757 -122.226 2.329 -0.665 -3.549 -1.004 -1.701 -122.255 21 CC_DC12DG8:DC18DG16_CC C 12 ? C 16 ? C 8 ? C 18 ? 1 C DG 8 1_555 C DC 18 1_555 C DG 7 1_555 C DC 19 1_555 0.609 -0.506 -3.097 10.228 -5.274 -29.888 -0.029 -0.731 -3.171 9.780 18.970 -31.980 22 CC_DG8DG7:DC19DC18_CC C 8 ? C 18 ? C 7 ? C 19 ? 1 C DG 7 1_555 C DC 19 1_555 C DC 6 1_555 C DG 20 1_555 -0.371 -0.966 -3.431 -12.621 -11.181 -30.283 -0.322 1.574 -3.454 19.610 -22.135 -34.564 23 CC_DG7DC6:DG20DC19_CC C 7 ? C 19 ? C 6 ? C 20 ? 1 C DC 6 1_555 C DG 20 1_555 C DA 5 1_555 C DT 21 1_555 0.228 0.900 -3.327 1.172 1.479 -33.739 -1.303 0.199 -3.368 -2.546 2.018 -33.791 24 CC_DC6DA5:DT21DG20_CC C 6 ? C 20 ? C 5 ? C 21 ? 1 C DA 5 1_555 C DT 21 1_555 C DG 4 1_555 C DT 22 1_555 0.466 0.117 -3.105 4.614 1.762 -39.923 0.022 0.176 -3.140 -2.568 6.727 -40.215 25 CC_DA5DG4:DT22DT21_CC C 5 ? C 21 ? C 4 ? C 22 ? 1 C DG 4 1_555 C DT 22 1_555 C DC 3 1_555 C DG 23 1_555 0.201 -0.040 -3.160 -5.315 -0.683 -36.269 -0.027 1.020 -3.101 1.090 -8.481 -36.650 26 CC_DG4DC3:DG23DT22_CC C 4 ? C 22 ? C 3 ? C 23 ? 1 C DC 3 1_555 C DG 23 1_555 C DA 2 1_555 C DT 24 1_555 -0.349 0.815 -3.345 2.365 -5.045 -33.479 -2.208 -0.977 -3.160 8.683 4.071 -33.926 27 CC_DC3DA2:DT24DG23_CC C 3 ? C 23 ? C 2 ? C 24 ? 1 C DA 2 1_555 C DT 24 1_555 C DG 1 1_555 C DC 25 1_555 0.446 0.252 -3.303 4.344 -2.973 -36.355 -0.812 0.106 -3.302 4.735 6.918 -36.722 28 CC_DA2DG1:DC25DT24_CC C 2 ? C 24 ? C 1 ? C 25 ? 1 C DG 1 1_555 C DC 25 1_555 D DG 15 1_555 D DC 11 1_555 -5.368 4.958 0.056 -46.893 -156.244 -30.836 -1.344 -3.059 3.103 84.039 -25.222 -163.740 29 CD_DG1DG15:DC11DC25_DC C 1 ? C 25 ? D 15 ? D 11 ? 1 D DG 15 1_555 D DC 11 1_555 D DG 16 1_555 D DC 12 1_555 -5.328 -4.376 -0.467 -105.405 93.811 -41.157 2.690 -2.368 -1.168 -55.131 -61.945 -143.678 30 DD_DG15DG16:DC12DC11_DD D 15 ? D 11 ? D 16 ? D 12 ? 1 D DG 16 1_555 D DC 12 1_555 D DC 18 1_555 D DG 8 1_555 -3.117 -2.041 4.021 80.427 -151.924 -38.151 2.603 -0.726 0.990 78.370 41.488 -172.345 31 DD_DG16DC18:DG8DC12_DD D 16 ? D 12 ? D 18 ? D 8 ? 1 D DC 18 1_555 D DG 8 1_555 D DC 19 1_555 D DG 7 1_555 0.714 0.448 3.017 6.438 1.922 30.219 0.486 -0.156 3.121 3.631 -12.160 30.940 32 DD_DC18DC19:DG7DG8_DD D 18 ? D 8 ? D 19 ? D 7 ? 1 D DC 19 1_555 D DG 7 1_555 D DG 20 1_555 D DC 6 1_555 -0.989 1.505 3.048 -6.093 4.073 29.499 2.059 0.672 3.353 7.847 11.738 30.376 33 DD_DC19DG20:DC6DG7_DD D 19 ? D 7 ? D 20 ? D 6 ? 1 D DG 20 1_555 D DC 6 1_555 D DT 21 1_555 D DA 5 1_555 0.429 -0.733 3.633 -0.977 -3.078 37.225 -0.691 -0.813 3.668 -4.811 1.526 37.360 34 DD_DG20DT21:DA5DC6_DD D 20 ? D 6 ? D 21 ? D 5 ? 1 D DT 21 1_555 D DA 5 1_555 D DT 22 1_555 D DG 4 1_555 0.687 -0.097 3.171 4.489 2.130 38.982 -0.393 -0.498 3.218 3.176 -6.694 39.285 35 DD_DT21DT22:DG4DA5_DD D 21 ? D 5 ? D 22 ? D 4 ? 1 D DT 22 1_555 D DG 4 1_555 D DG 23 1_555 D DC 3 1_555 0.148 0.135 2.966 -3.425 1.282 37.509 0.058 -0.631 2.945 1.987 5.311 37.681 36 DD_DT22DG23:DC3DG4_DD D 22 ? D 4 ? D 23 ? D 3 ? 1 D DG 23 1_555 D DC 3 1_555 D DT 24 1_555 D DA 2 1_555 -0.338 -0.802 3.429 1.674 0.891 33.412 -1.547 0.875 3.386 1.548 -2.908 33.464 37 DD_DG23DT24:DA2DC3_DD D 23 ? D 3 ? D 24 ? D 2 ? 1 D DT 24 1_555 D DA 2 1_555 D DC 25 1_555 D DG 1 1_555 0.797 -0.193 3.162 2.600 0.966 33.428 -0.490 -0.965 3.206 1.675 -4.510 33.540 38 DD_DT24DC25:DG1DA2_DD D 24 ? D 2 ? D 25 ? D 1 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171197 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 BA ? ? BA ? ? 'SUBJECT OF INVESTIGATION' ? 2 CD ? ? CD ? ? 'SUBJECT OF INVESTIGATION' ? # _atom_sites.entry_id 8GZL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.037313 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001871 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021887 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006810 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol BA C CD N O P # loop_