data_8H05 # _entry.id 8H05 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8H05 pdb_00008h05 10.2210/pdb8h05/pdb WWPDB D_1300032558 ? ? EMDB EMD-31704 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-31704 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8H05 _pdbx_database_status.recvd_initial_deposition_date 2022-09-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fan, Y.' 1 ? 'Sun, Y.P.' 2 ? 'Wang, J.' 3 ? 'Liu, C.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 31 _citation.language ? _citation.page_first 78 _citation.page_last ? _citation.title ;Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2022.11.013 _citation.pdbx_database_id_PubMed 36513068 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fan, Y.' 1 ? primary 'Sun, Y.' 2 ? primary 'Yu, W.' 3 ? primary 'Tao, Y.' 4 ? primary 'Xia, W.' 5 ? primary 'Liu, Y.' 6 ? primary 'Zhao, Q.' 7 ? primary 'Tang, Y.' 8 ? primary 'Sun, Y.' 9 ? primary 'Liu, F.' 10 ? primary 'Cao, Q.' 11 ? primary 'Wu, J.' 12 ? primary 'Liu, C.' 13 ? primary 'Wang, J.' 14 ? primary 'Li, D.' 15 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8H05 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8H05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Alpha-synuclein _entity.formula_weight 14476.108 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-A beta component of AD amyloid,Non-A4 component of amyloid precursor,NACP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA ; _entity_poly.pdbx_seq_one_letter_code_can ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA ; _entity_poly.pdbx_strand_id C,A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 VAL n 1 4 PHE n 1 5 MET n 1 6 LYS n 1 7 GLY n 1 8 LEU n 1 9 SER n 1 10 LYS n 1 11 ALA n 1 12 LYS n 1 13 GLU n 1 14 GLY n 1 15 VAL n 1 16 VAL n 1 17 ALA n 1 18 ALA n 1 19 ALA n 1 20 GLU n 1 21 LYS n 1 22 THR n 1 23 LYS n 1 24 GLN n 1 25 GLY n 1 26 VAL n 1 27 ALA n 1 28 GLU n 1 29 ALA n 1 30 ALA n 1 31 GLY n 1 32 LYS n 1 33 THR n 1 34 LYS n 1 35 GLU n 1 36 GLY n 1 37 VAL n 1 38 LEU n 1 39 TYR n 1 40 VAL n 1 41 GLY n 1 42 SER n 1 43 LYS n 1 44 THR n 1 45 LYS n 1 46 GLU n 1 47 GLY n 1 48 VAL n 1 49 VAL n 1 50 HIS n 1 51 GLY n 1 52 VAL n 1 53 ALA n 1 54 THR n 1 55 VAL n 1 56 ALA n 1 57 GLU n 1 58 LYS n 1 59 THR n 1 60 LYS n 1 61 GLU n 1 62 GLN n 1 63 VAL n 1 64 THR n 1 65 ASN n 1 66 VAL n 1 67 GLY n 1 68 GLY n 1 69 ALA n 1 70 VAL n 1 71 VAL n 1 72 THR n 1 73 GLY n 1 74 VAL n 1 75 THR n 1 76 ALA n 1 77 VAL n 1 78 ALA n 1 79 GLN n 1 80 LYS n 1 81 THR n 1 82 VAL n 1 83 GLU n 1 84 GLY n 1 85 ALA n 1 86 GLY n 1 87 SER n 1 88 ILE n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 THR n 1 93 GLY n 1 94 PHE n 1 95 VAL n 1 96 LYS n 1 97 LYS n 1 98 ASP n 1 99 GLN n 1 100 LEU n 1 101 GLY n 1 102 LYS n 1 103 ASN n 1 104 GLU n 1 105 GLU n 1 106 GLY n 1 107 ALA n 1 108 PRO n 1 109 GLN n 1 110 GLU n 1 111 GLY n 1 112 ILE n 1 113 LEU n 1 114 GLU n 1 115 ASP n 1 116 MET n 1 117 PRO n 1 118 VAL n 1 119 ASP n 1 120 PRO n 1 121 ASP n 1 122 ASN n 1 123 GLU n 1 124 ALA n 1 125 TYR n 1 126 GLU n 1 127 MET n 1 128 PRO n 1 129 SER n 1 130 GLU n 1 131 GLU n 1 132 GLY n 1 133 TYR n 1 134 GLN n 1 135 ASP n 1 136 TYR n 1 137 GLU n 1 138 PRO n 1 139 GLU n 1 140 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 140 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SNCA, NACP, PARK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYUA_HUMAN _struct_ref.pdbx_db_accession P37840 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8H05 C 1 ? 140 ? P37840 1 ? 140 ? 1 140 2 1 8H05 A 1 ? 140 ? P37840 1 ? 140 ? 1 140 3 1 8H05 B 1 ? 140 ? P37840 1 ? 140 ? 1 140 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8H05 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 88.60 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8H05 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0015 ? 1221 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.4282 ? 1656 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0496 ? 219 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0016 ? 207 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 3.5892 ? 180 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'ELECTRON MICROSCOPY' d_2 ? ? 3.67552693184e-12 ? ? 1 'NCS constraints' ? C ? ? ? ens_1 'ELECTRON MICROSCOPY' d_3 ? ? 2.21485681556e-12 ? ? 2 'NCS constraints' ? C ? ? ? ens_1 # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 0.999771435914 0.021379311907 -3.08814301615e-05 -0.0213792961238 0.999771338381 0.000443451260662 4.03550515809e-05 -0.00044268968039 0.999999901199 -2.84418035874 2.87471378811 4.92516544642 ? 2 given 0.999038529226 0.0438408155925 3.19768741801e-06 -0.0438408156123 0.999038519513 0.000139338784846 2.91411306736e-06 -0.000139345003901 0.999999990287 -5.81377828441 6.07085630729 9.71653462258 ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;chain "B" ; ens_1 d_2 ;chain "A" ; ens_1 d_3 ;chain "C" ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 . C GLY 1 . C VAL 60 ? ? ? ? ? ? ens_1 d_2 1 . B GLY 1 . B VAL 60 ? ? ? ? ? ? ens_1 d_3 1 . A GLY 1 . A VAL 60 ? ? ? ? ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # loop_ _struct_ncs_ens_gen.ens_id _struct_ncs_ens_gen.dom_id_1 _struct_ncs_ens_gen.dom_id_2 _struct_ncs_ens_gen.oper_id ens_1 d_2 d_1 1 ens_1 d_3 d_1 2 # _struct.entry_id 8H05 _struct.title ;Minor polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8H05 _struct_keywords.text 'amyloid fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 37 ? VAL A 40 ? VAL C 37 VAL C 40 AA1 2 VAL B 37 ? VAL B 40 ? VAL A 37 VAL A 40 AA1 3 VAL C 37 ? VAL C 40 ? VAL B 37 VAL B 40 AA2 1 THR A 44 ? HIS A 50 ? THR C 44 HIS C 50 AA2 2 THR B 44 ? HIS B 50 ? THR A 44 HIS A 50 AA2 3 THR C 44 ? HIS C 50 ? THR B 44 HIS B 50 AA3 1 VAL A 63 ? THR A 64 ? VAL C 63 THR C 64 AA3 2 VAL B 63 ? THR B 64 ? VAL A 63 THR A 64 AA3 3 VAL C 63 ? THR C 64 ? VAL B 63 THR B 64 AA4 1 THR A 75 ? ALA A 78 ? THR C 75 ALA C 78 AA4 2 THR B 75 ? ALA B 78 ? THR A 75 ALA A 78 AA4 3 THR C 75 ? ALA C 78 ? THR B 75 ALA B 78 AA5 1 SER A 87 ? ALA A 89 ? SER C 87 ALA C 89 AA5 2 SER B 87 ? ALA B 89 ? SER A 87 ALA A 89 AA5 3 SER C 87 ? ALA C 89 ? SER B 87 ALA B 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 38 ? N LEU C 38 O TYR B 39 ? O TYR A 39 AA1 2 3 N LEU B 38 ? N LEU A 38 O TYR C 39 ? O TYR B 39 AA2 1 2 N LYS A 45 ? N LYS C 45 O GLU B 46 ? O GLU A 46 AA2 2 3 N LYS B 45 ? N LYS A 45 O GLU C 46 ? O GLU B 46 AA3 1 2 N THR A 64 ? N THR C 64 O VAL B 63 ? O VAL A 63 AA3 2 3 N THR B 64 ? N THR A 64 O VAL C 63 ? O VAL B 63 AA4 1 2 N THR A 75 ? N THR C 75 O ALA B 76 ? O ALA A 76 AA4 2 3 N THR B 75 ? N THR A 75 O ALA C 76 ? O ALA B 76 AA5 1 2 N ILE A 88 ? N ILE C 88 O SER B 87 ? O SER A 87 AA5 2 3 N ILE B 88 ? N ILE A 88 O SER C 87 ? O SER B 87 # _atom_sites.entry_id 8H05 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? C . n A 1 2 ASP 2 2 ? ? ? C . n A 1 3 VAL 3 3 ? ? ? C . n A 1 4 PHE 4 4 ? ? ? C . n A 1 5 MET 5 5 ? ? ? C . n A 1 6 LYS 6 6 ? ? ? C . n A 1 7 GLY 7 7 ? ? ? C . n A 1 8 LEU 8 8 ? ? ? C . n A 1 9 SER 9 9 ? ? ? C . n A 1 10 LYS 10 10 ? ? ? C . n A 1 11 ALA 11 11 ? ? ? C . n A 1 12 LYS 12 12 ? ? ? C . n A 1 13 GLU 13 13 ? ? ? C . n A 1 14 GLY 14 14 ? ? ? C . n A 1 15 VAL 15 15 ? ? ? C . n A 1 16 VAL 16 16 ? ? ? C . n A 1 17 ALA 17 17 ? ? ? C . n A 1 18 ALA 18 18 ? ? ? C . n A 1 19 ALA 19 19 ? ? ? C . n A 1 20 GLU 20 20 ? ? ? C . n A 1 21 LYS 21 21 ? ? ? C . n A 1 22 THR 22 22 ? ? ? C . n A 1 23 LYS 23 23 ? ? ? C . n A 1 24 GLN 24 24 ? ? ? C . n A 1 25 GLY 25 25 ? ? ? C . n A 1 26 VAL 26 26 ? ? ? C . n A 1 27 ALA 27 27 ? ? ? C . n A 1 28 GLU 28 28 ? ? ? C . n A 1 29 ALA 29 29 ? ? ? C . n A 1 30 ALA 30 30 ? ? ? C . n A 1 31 GLY 31 31 ? ? ? C . n A 1 32 LYS 32 32 ? ? ? C . n A 1 33 THR 33 33 ? ? ? C . n A 1 34 LYS 34 34 ? ? ? C . n A 1 35 GLU 35 35 ? ? ? C . n A 1 36 GLY 36 36 36 GLY GLY C . n A 1 37 VAL 37 37 37 VAL VAL C . n A 1 38 LEU 38 38 38 LEU LEU C . n A 1 39 TYR 39 39 39 TYR TYR C . n A 1 40 VAL 40 40 40 VAL VAL C . n A 1 41 GLY 41 41 41 GLY GLY C . n A 1 42 SER 42 42 42 SER SER C . n A 1 43 LYS 43 43 43 LYS LYS C . n A 1 44 THR 44 44 44 THR THR C . n A 1 45 LYS 45 45 45 LYS LYS C . n A 1 46 GLU 46 46 46 GLU GLU C . n A 1 47 GLY 47 47 47 GLY GLY C . n A 1 48 VAL 48 48 48 VAL VAL C . n A 1 49 VAL 49 49 49 VAL VAL C . n A 1 50 HIS 50 50 50 HIS HIS C . n A 1 51 GLY 51 51 51 GLY GLY C . n A 1 52 VAL 52 52 52 VAL VAL C . n A 1 53 ALA 53 53 53 ALA ALA C . n A 1 54 THR 54 54 54 THR THR C . n A 1 55 VAL 55 55 55 VAL VAL C . n A 1 56 ALA 56 56 56 ALA ALA C . n A 1 57 GLU 57 57 57 GLU GLU C . n A 1 58 LYS 58 58 58 LYS LYS C . n A 1 59 THR 59 59 59 THR THR C . n A 1 60 LYS 60 60 60 LYS LYS C . n A 1 61 GLU 61 61 61 GLU GLU C . n A 1 62 GLN 62 62 62 GLN GLN C . n A 1 63 VAL 63 63 63 VAL VAL C . n A 1 64 THR 64 64 64 THR THR C . n A 1 65 ASN 65 65 65 ASN ASN C . n A 1 66 VAL 66 66 66 VAL VAL C . n A 1 67 GLY 67 67 67 GLY GLY C . n A 1 68 GLY 68 68 68 GLY GLY C . n A 1 69 ALA 69 69 69 ALA ALA C . n A 1 70 VAL 70 70 70 VAL VAL C . n A 1 71 VAL 71 71 71 VAL VAL C . n A 1 72 THR 72 72 72 THR THR C . n A 1 73 GLY 73 73 73 GLY GLY C . n A 1 74 VAL 74 74 74 VAL VAL C . n A 1 75 THR 75 75 75 THR THR C . n A 1 76 ALA 76 76 76 ALA ALA C . n A 1 77 VAL 77 77 77 VAL VAL C . n A 1 78 ALA 78 78 78 ALA ALA C . n A 1 79 GLN 79 79 79 GLN GLN C . n A 1 80 LYS 80 80 80 LYS LYS C . n A 1 81 THR 81 81 81 THR THR C . n A 1 82 VAL 82 82 82 VAL VAL C . n A 1 83 GLU 83 83 83 GLU GLU C . n A 1 84 GLY 84 84 84 GLY GLY C . n A 1 85 ALA 85 85 85 ALA ALA C . n A 1 86 GLY 86 86 86 GLY GLY C . n A 1 87 SER 87 87 87 SER SER C . n A 1 88 ILE 88 88 88 ILE ILE C . n A 1 89 ALA 89 89 89 ALA ALA C . n A 1 90 ALA 90 90 90 ALA ALA C . n A 1 91 ALA 91 91 91 ALA ALA C . n A 1 92 THR 92 92 92 THR THR C . n A 1 93 GLY 93 93 93 GLY GLY C . n A 1 94 PHE 94 94 94 PHE PHE C . n A 1 95 VAL 95 95 95 VAL VAL C . n A 1 96 LYS 96 96 ? ? ? C . n A 1 97 LYS 97 97 ? ? ? C . n A 1 98 ASP 98 98 ? ? ? C . n A 1 99 GLN 99 99 ? ? ? C . n A 1 100 LEU 100 100 ? ? ? C . n A 1 101 GLY 101 101 ? ? ? C . n A 1 102 LYS 102 102 ? ? ? C . n A 1 103 ASN 103 103 ? ? ? C . n A 1 104 GLU 104 104 ? ? ? C . n A 1 105 GLU 105 105 ? ? ? C . n A 1 106 GLY 106 106 ? ? ? C . n A 1 107 ALA 107 107 ? ? ? C . n A 1 108 PRO 108 108 ? ? ? C . n A 1 109 GLN 109 109 ? ? ? C . n A 1 110 GLU 110 110 ? ? ? C . n A 1 111 GLY 111 111 ? ? ? C . n A 1 112 ILE 112 112 ? ? ? C . n A 1 113 LEU 113 113 ? ? ? C . n A 1 114 GLU 114 114 ? ? ? C . n A 1 115 ASP 115 115 ? ? ? C . n A 1 116 MET 116 116 ? ? ? C . n A 1 117 PRO 117 117 ? ? ? C . n A 1 118 VAL 118 118 ? ? ? C . n A 1 119 ASP 119 119 ? ? ? C . n A 1 120 PRO 120 120 ? ? ? C . n A 1 121 ASP 121 121 ? ? ? C . n A 1 122 ASN 122 122 ? ? ? C . n A 1 123 GLU 123 123 ? ? ? C . n A 1 124 ALA 124 124 ? ? ? C . n A 1 125 TYR 125 125 ? ? ? C . n A 1 126 GLU 126 126 ? ? ? C . n A 1 127 MET 127 127 ? ? ? C . n A 1 128 PRO 128 128 ? ? ? C . n A 1 129 SER 129 129 ? ? ? C . n A 1 130 GLU 130 130 ? ? ? C . n A 1 131 GLU 131 131 ? ? ? C . n A 1 132 GLY 132 132 ? ? ? C . n A 1 133 TYR 133 133 ? ? ? C . n A 1 134 GLN 134 134 ? ? ? C . n A 1 135 ASP 135 135 ? ? ? C . n A 1 136 TYR 136 136 ? ? ? C . n A 1 137 GLU 137 137 ? ? ? C . n A 1 138 PRO 138 138 ? ? ? C . n A 1 139 GLU 139 139 ? ? ? C . n A 1 140 ALA 140 140 ? ? ? C . n B 1 1 MET 1 1 ? ? ? A . n B 1 2 ASP 2 2 ? ? ? A . n B 1 3 VAL 3 3 ? ? ? A . n B 1 4 PHE 4 4 ? ? ? A . n B 1 5 MET 5 5 ? ? ? A . n B 1 6 LYS 6 6 ? ? ? A . n B 1 7 GLY 7 7 ? ? ? A . n B 1 8 LEU 8 8 ? ? ? A . n B 1 9 SER 9 9 ? ? ? A . n B 1 10 LYS 10 10 ? ? ? A . n B 1 11 ALA 11 11 ? ? ? A . n B 1 12 LYS 12 12 ? ? ? A . n B 1 13 GLU 13 13 ? ? ? A . n B 1 14 GLY 14 14 ? ? ? A . n B 1 15 VAL 15 15 ? ? ? A . n B 1 16 VAL 16 16 ? ? ? A . n B 1 17 ALA 17 17 ? ? ? A . n B 1 18 ALA 18 18 ? ? ? A . n B 1 19 ALA 19 19 ? ? ? A . n B 1 20 GLU 20 20 ? ? ? A . n B 1 21 LYS 21 21 ? ? ? A . n B 1 22 THR 22 22 ? ? ? A . n B 1 23 LYS 23 23 ? ? ? A . n B 1 24 GLN 24 24 ? ? ? A . n B 1 25 GLY 25 25 ? ? ? A . n B 1 26 VAL 26 26 ? ? ? A . n B 1 27 ALA 27 27 ? ? ? A . n B 1 28 GLU 28 28 ? ? ? A . n B 1 29 ALA 29 29 ? ? ? A . n B 1 30 ALA 30 30 ? ? ? A . n B 1 31 GLY 31 31 ? ? ? A . n B 1 32 LYS 32 32 ? ? ? A . n B 1 33 THR 33 33 ? ? ? A . n B 1 34 LYS 34 34 ? ? ? A . n B 1 35 GLU 35 35 ? ? ? A . n B 1 36 GLY 36 36 36 GLY GLY A . n B 1 37 VAL 37 37 37 VAL VAL A . n B 1 38 LEU 38 38 38 LEU LEU A . n B 1 39 TYR 39 39 39 TYR TYR A . n B 1 40 VAL 40 40 40 VAL VAL A . n B 1 41 GLY 41 41 41 GLY GLY A . n B 1 42 SER 42 42 42 SER SER A . n B 1 43 LYS 43 43 43 LYS LYS A . n B 1 44 THR 44 44 44 THR THR A . n B 1 45 LYS 45 45 45 LYS LYS A . n B 1 46 GLU 46 46 46 GLU GLU A . n B 1 47 GLY 47 47 47 GLY GLY A . n B 1 48 VAL 48 48 48 VAL VAL A . n B 1 49 VAL 49 49 49 VAL VAL A . n B 1 50 HIS 50 50 50 HIS HIS A . n B 1 51 GLY 51 51 51 GLY GLY A . n B 1 52 VAL 52 52 52 VAL VAL A . n B 1 53 ALA 53 53 53 ALA ALA A . n B 1 54 THR 54 54 54 THR THR A . n B 1 55 VAL 55 55 55 VAL VAL A . n B 1 56 ALA 56 56 56 ALA ALA A . n B 1 57 GLU 57 57 57 GLU GLU A . n B 1 58 LYS 58 58 58 LYS LYS A . n B 1 59 THR 59 59 59 THR THR A . n B 1 60 LYS 60 60 60 LYS LYS A . n B 1 61 GLU 61 61 61 GLU GLU A . n B 1 62 GLN 62 62 62 GLN GLN A . n B 1 63 VAL 63 63 63 VAL VAL A . n B 1 64 THR 64 64 64 THR THR A . n B 1 65 ASN 65 65 65 ASN ASN A . n B 1 66 VAL 66 66 66 VAL VAL A . n B 1 67 GLY 67 67 67 GLY GLY A . n B 1 68 GLY 68 68 68 GLY GLY A . n B 1 69 ALA 69 69 69 ALA ALA A . n B 1 70 VAL 70 70 70 VAL VAL A . n B 1 71 VAL 71 71 71 VAL VAL A . n B 1 72 THR 72 72 72 THR THR A . n B 1 73 GLY 73 73 73 GLY GLY A . n B 1 74 VAL 74 74 74 VAL VAL A . n B 1 75 THR 75 75 75 THR THR A . n B 1 76 ALA 76 76 76 ALA ALA A . n B 1 77 VAL 77 77 77 VAL VAL A . n B 1 78 ALA 78 78 78 ALA ALA A . n B 1 79 GLN 79 79 79 GLN GLN A . n B 1 80 LYS 80 80 80 LYS LYS A . n B 1 81 THR 81 81 81 THR THR A . n B 1 82 VAL 82 82 82 VAL VAL A . n B 1 83 GLU 83 83 83 GLU GLU A . n B 1 84 GLY 84 84 84 GLY GLY A . n B 1 85 ALA 85 85 85 ALA ALA A . n B 1 86 GLY 86 86 86 GLY GLY A . n B 1 87 SER 87 87 87 SER SER A . n B 1 88 ILE 88 88 88 ILE ILE A . n B 1 89 ALA 89 89 89 ALA ALA A . n B 1 90 ALA 90 90 90 ALA ALA A . n B 1 91 ALA 91 91 91 ALA ALA A . n B 1 92 THR 92 92 92 THR THR A . n B 1 93 GLY 93 93 93 GLY GLY A . n B 1 94 PHE 94 94 94 PHE PHE A . n B 1 95 VAL 95 95 95 VAL VAL A . n B 1 96 LYS 96 96 ? ? ? A . n B 1 97 LYS 97 97 ? ? ? A . n B 1 98 ASP 98 98 ? ? ? A . n B 1 99 GLN 99 99 ? ? ? A . n B 1 100 LEU 100 100 ? ? ? A . n B 1 101 GLY 101 101 ? ? ? A . n B 1 102 LYS 102 102 ? ? ? A . n B 1 103 ASN 103 103 ? ? ? A . n B 1 104 GLU 104 104 ? ? ? A . n B 1 105 GLU 105 105 ? ? ? A . n B 1 106 GLY 106 106 ? ? ? A . n B 1 107 ALA 107 107 ? ? ? A . n B 1 108 PRO 108 108 ? ? ? A . n B 1 109 GLN 109 109 ? ? ? A . n B 1 110 GLU 110 110 ? ? ? A . n B 1 111 GLY 111 111 ? ? ? A . n B 1 112 ILE 112 112 ? ? ? A . n B 1 113 LEU 113 113 ? ? ? A . n B 1 114 GLU 114 114 ? ? ? A . n B 1 115 ASP 115 115 ? ? ? A . n B 1 116 MET 116 116 ? ? ? A . n B 1 117 PRO 117 117 ? ? ? A . n B 1 118 VAL 118 118 ? ? ? A . n B 1 119 ASP 119 119 ? ? ? A . n B 1 120 PRO 120 120 ? ? ? A . n B 1 121 ASP 121 121 ? ? ? A . n B 1 122 ASN 122 122 ? ? ? A . n B 1 123 GLU 123 123 ? ? ? A . n B 1 124 ALA 124 124 ? ? ? A . n B 1 125 TYR 125 125 ? ? ? A . n B 1 126 GLU 126 126 ? ? ? A . n B 1 127 MET 127 127 ? ? ? A . n B 1 128 PRO 128 128 ? ? ? A . n B 1 129 SER 129 129 ? ? ? A . n B 1 130 GLU 130 130 ? ? ? A . n B 1 131 GLU 131 131 ? ? ? A . n B 1 132 GLY 132 132 ? ? ? A . n B 1 133 TYR 133 133 ? ? ? A . n B 1 134 GLN 134 134 ? ? ? A . n B 1 135 ASP 135 135 ? ? ? A . n B 1 136 TYR 136 136 ? ? ? A . n B 1 137 GLU 137 137 ? ? ? A . n B 1 138 PRO 138 138 ? ? ? A . n B 1 139 GLU 139 139 ? ? ? A . n B 1 140 ALA 140 140 ? ? ? A . n C 1 1 MET 1 1 ? ? ? B . n C 1 2 ASP 2 2 ? ? ? B . n C 1 3 VAL 3 3 ? ? ? B . n C 1 4 PHE 4 4 ? ? ? B . n C 1 5 MET 5 5 ? ? ? B . n C 1 6 LYS 6 6 ? ? ? B . n C 1 7 GLY 7 7 ? ? ? B . n C 1 8 LEU 8 8 ? ? ? B . n C 1 9 SER 9 9 ? ? ? B . n C 1 10 LYS 10 10 ? ? ? B . n C 1 11 ALA 11 11 ? ? ? B . n C 1 12 LYS 12 12 ? ? ? B . n C 1 13 GLU 13 13 ? ? ? B . n C 1 14 GLY 14 14 ? ? ? B . n C 1 15 VAL 15 15 ? ? ? B . n C 1 16 VAL 16 16 ? ? ? B . n C 1 17 ALA 17 17 ? ? ? B . n C 1 18 ALA 18 18 ? ? ? B . n C 1 19 ALA 19 19 ? ? ? B . n C 1 20 GLU 20 20 ? ? ? B . n C 1 21 LYS 21 21 ? ? ? B . n C 1 22 THR 22 22 ? ? ? B . n C 1 23 LYS 23 23 ? ? ? B . n C 1 24 GLN 24 24 ? ? ? B . n C 1 25 GLY 25 25 ? ? ? B . n C 1 26 VAL 26 26 ? ? ? B . n C 1 27 ALA 27 27 ? ? ? B . n C 1 28 GLU 28 28 ? ? ? B . n C 1 29 ALA 29 29 ? ? ? B . n C 1 30 ALA 30 30 ? ? ? B . n C 1 31 GLY 31 31 ? ? ? B . n C 1 32 LYS 32 32 ? ? ? B . n C 1 33 THR 33 33 ? ? ? B . n C 1 34 LYS 34 34 ? ? ? B . n C 1 35 GLU 35 35 ? ? ? B . n C 1 36 GLY 36 36 36 GLY GLY B . n C 1 37 VAL 37 37 37 VAL VAL B . n C 1 38 LEU 38 38 38 LEU LEU B . n C 1 39 TYR 39 39 39 TYR TYR B . n C 1 40 VAL 40 40 40 VAL VAL B . n C 1 41 GLY 41 41 41 GLY GLY B . n C 1 42 SER 42 42 42 SER SER B . n C 1 43 LYS 43 43 43 LYS LYS B . n C 1 44 THR 44 44 44 THR THR B . n C 1 45 LYS 45 45 45 LYS LYS B . n C 1 46 GLU 46 46 46 GLU GLU B . n C 1 47 GLY 47 47 47 GLY GLY B . n C 1 48 VAL 48 48 48 VAL VAL B . n C 1 49 VAL 49 49 49 VAL VAL B . n C 1 50 HIS 50 50 50 HIS HIS B . n C 1 51 GLY 51 51 51 GLY GLY B . n C 1 52 VAL 52 52 52 VAL VAL B . n C 1 53 ALA 53 53 53 ALA ALA B . n C 1 54 THR 54 54 54 THR THR B . n C 1 55 VAL 55 55 55 VAL VAL B . n C 1 56 ALA 56 56 56 ALA ALA B . n C 1 57 GLU 57 57 57 GLU GLU B . n C 1 58 LYS 58 58 58 LYS LYS B . n C 1 59 THR 59 59 59 THR THR B . n C 1 60 LYS 60 60 60 LYS LYS B . n C 1 61 GLU 61 61 61 GLU GLU B . n C 1 62 GLN 62 62 62 GLN GLN B . n C 1 63 VAL 63 63 63 VAL VAL B . n C 1 64 THR 64 64 64 THR THR B . n C 1 65 ASN 65 65 65 ASN ASN B . n C 1 66 VAL 66 66 66 VAL VAL B . n C 1 67 GLY 67 67 67 GLY GLY B . n C 1 68 GLY 68 68 68 GLY GLY B . n C 1 69 ALA 69 69 69 ALA ALA B . n C 1 70 VAL 70 70 70 VAL VAL B . n C 1 71 VAL 71 71 71 VAL VAL B . n C 1 72 THR 72 72 72 THR THR B . n C 1 73 GLY 73 73 73 GLY GLY B . n C 1 74 VAL 74 74 74 VAL VAL B . n C 1 75 THR 75 75 75 THR THR B . n C 1 76 ALA 76 76 76 ALA ALA B . n C 1 77 VAL 77 77 77 VAL VAL B . n C 1 78 ALA 78 78 78 ALA ALA B . n C 1 79 GLN 79 79 79 GLN GLN B . n C 1 80 LYS 80 80 80 LYS LYS B . n C 1 81 THR 81 81 81 THR THR B . n C 1 82 VAL 82 82 82 VAL VAL B . n C 1 83 GLU 83 83 83 GLU GLU B . n C 1 84 GLY 84 84 84 GLY GLY B . n C 1 85 ALA 85 85 85 ALA ALA B . n C 1 86 GLY 86 86 86 GLY GLY B . n C 1 87 SER 87 87 87 SER SER B . n C 1 88 ILE 88 88 88 ILE ILE B . n C 1 89 ALA 89 89 89 ALA ALA B . n C 1 90 ALA 90 90 90 ALA ALA B . n C 1 91 ALA 91 91 91 ALA ALA B . n C 1 92 THR 92 92 92 THR THR B . n C 1 93 GLY 93 93 93 GLY GLY B . n C 1 94 PHE 94 94 94 PHE PHE B . n C 1 95 VAL 95 95 95 VAL VAL B . n C 1 96 LYS 96 96 ? ? ? B . n C 1 97 LYS 97 97 ? ? ? B . n C 1 98 ASP 98 98 ? ? ? B . n C 1 99 GLN 99 99 ? ? ? B . n C 1 100 LEU 100 100 ? ? ? B . n C 1 101 GLY 101 101 ? ? ? B . n C 1 102 LYS 102 102 ? ? ? B . n C 1 103 ASN 103 103 ? ? ? B . n C 1 104 GLU 104 104 ? ? ? B . n C 1 105 GLU 105 105 ? ? ? B . n C 1 106 GLY 106 106 ? ? ? B . n C 1 107 ALA 107 107 ? ? ? B . n C 1 108 PRO 108 108 ? ? ? B . n C 1 109 GLN 109 109 ? ? ? B . n C 1 110 GLU 110 110 ? ? ? B . n C 1 111 GLY 111 111 ? ? ? B . n C 1 112 ILE 112 112 ? ? ? B . n C 1 113 LEU 113 113 ? ? ? B . n C 1 114 GLU 114 114 ? ? ? B . n C 1 115 ASP 115 115 ? ? ? B . n C 1 116 MET 116 116 ? ? ? B . n C 1 117 PRO 117 117 ? ? ? B . n C 1 118 VAL 118 118 ? ? ? B . n C 1 119 ASP 119 119 ? ? ? B . n C 1 120 PRO 120 120 ? ? ? B . n C 1 121 ASP 121 121 ? ? ? B . n C 1 122 ASN 122 122 ? ? ? B . n C 1 123 GLU 123 123 ? ? ? B . n C 1 124 ALA 124 124 ? ? ? B . n C 1 125 TYR 125 125 ? ? ? B . n C 1 126 GLU 126 126 ? ? ? B . n C 1 127 MET 127 127 ? ? ? B . n C 1 128 PRO 128 128 ? ? ? B . n C 1 129 SER 129 129 ? ? ? B . n C 1 130 GLU 130 130 ? ? ? B . n C 1 131 GLU 131 131 ? ? ? B . n C 1 132 GLY 132 132 ? ? ? B . n C 1 133 TYR 133 133 ? ? ? B . n C 1 134 GLN 134 134 ? ? ? B . n C 1 135 ASP 135 135 ? ? ? B . n C 1 136 TYR 136 136 ? ? ? B . n C 1 137 GLU 137 137 ? ? ? B . n C 1 138 PRO 138 138 ? ? ? B . n C 1 139 GLU 139 139 ? ? ? B . n C 1 140 ALA 140 140 ? ? ? B . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 wangjian_hs@fudan.edu.cn Jian Wang ? 'principal investigator/group leader' 0000-0002-2748-395X 4 liulab@sioc.ac.cn Cong Liu ? 'principal investigator/group leader' 0000-0003-3425-6672 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-11-30 2 'Structure model' 1 1 2023-01-11 3 'Structure model' 1 2 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.year' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? 'Pavel Afonine' pafonine@lbl.gov ? ? ? ? Python/C++ https://www.phenix-online.org/ ? phenix.real_space_refine ? ? program 1.20.1_4487 1 ? refinement ? ? 'Paul D. Adams' pdadams@lbl.gov ? ? ? ? Python/C++ https://www.phenix-online.org/ ? PHENIX ? ? program 1.20.1_4487 2 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8H05 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8H05 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 143844 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 6.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name ;Minor polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient ; _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8H05 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8H05 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8H05 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C VAL 82 ? CG1 ? A VAL 82 CG1 2 1 Y 1 C VAL 82 ? CG2 ? A VAL 82 CG2 3 1 Y 1 A VAL 82 ? CG1 ? B VAL 82 CG1 4 1 Y 1 A VAL 82 ? CG2 ? B VAL 82 CG2 5 1 Y 1 B VAL 82 ? CG1 ? C VAL 82 CG1 6 1 Y 1 B VAL 82 ? CG2 ? C VAL 82 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C MET 1 ? A MET 1 2 1 Y 1 C ASP 2 ? A ASP 2 3 1 Y 1 C VAL 3 ? A VAL 3 4 1 Y 1 C PHE 4 ? A PHE 4 5 1 Y 1 C MET 5 ? A MET 5 6 1 Y 1 C LYS 6 ? A LYS 6 7 1 Y 1 C GLY 7 ? A GLY 7 8 1 Y 1 C LEU 8 ? A LEU 8 9 1 Y 1 C SER 9 ? A SER 9 10 1 Y 1 C LYS 10 ? A LYS 10 11 1 Y 1 C ALA 11 ? A ALA 11 12 1 Y 1 C LYS 12 ? A LYS 12 13 1 Y 1 C GLU 13 ? A GLU 13 14 1 Y 1 C GLY 14 ? A GLY 14 15 1 Y 1 C VAL 15 ? A VAL 15 16 1 Y 1 C VAL 16 ? A VAL 16 17 1 Y 1 C ALA 17 ? A ALA 17 18 1 Y 1 C ALA 18 ? A ALA 18 19 1 Y 1 C ALA 19 ? A ALA 19 20 1 Y 1 C GLU 20 ? A GLU 20 21 1 Y 1 C LYS 21 ? A LYS 21 22 1 Y 1 C THR 22 ? A THR 22 23 1 Y 1 C LYS 23 ? A LYS 23 24 1 Y 1 C GLN 24 ? A GLN 24 25 1 Y 1 C GLY 25 ? A GLY 25 26 1 Y 1 C VAL 26 ? A VAL 26 27 1 Y 1 C ALA 27 ? A ALA 27 28 1 Y 1 C GLU 28 ? A GLU 28 29 1 Y 1 C ALA 29 ? A ALA 29 30 1 Y 1 C ALA 30 ? A ALA 30 31 1 Y 1 C GLY 31 ? A GLY 31 32 1 Y 1 C LYS 32 ? A LYS 32 33 1 Y 1 C THR 33 ? A THR 33 34 1 Y 1 C LYS 34 ? A LYS 34 35 1 Y 1 C GLU 35 ? A GLU 35 36 1 Y 1 C LYS 96 ? A LYS 96 37 1 Y 1 C LYS 97 ? A LYS 97 38 1 Y 1 C ASP 98 ? A ASP 98 39 1 Y 1 C GLN 99 ? A GLN 99 40 1 Y 1 C LEU 100 ? A LEU 100 41 1 Y 1 C GLY 101 ? A GLY 101 42 1 Y 1 C LYS 102 ? A LYS 102 43 1 Y 1 C ASN 103 ? A ASN 103 44 1 Y 1 C GLU 104 ? A GLU 104 45 1 Y 1 C GLU 105 ? A GLU 105 46 1 Y 1 C GLY 106 ? A GLY 106 47 1 Y 1 C ALA 107 ? A ALA 107 48 1 Y 1 C PRO 108 ? A PRO 108 49 1 Y 1 C GLN 109 ? A GLN 109 50 1 Y 1 C GLU 110 ? A GLU 110 51 1 Y 1 C GLY 111 ? A GLY 111 52 1 Y 1 C ILE 112 ? A ILE 112 53 1 Y 1 C LEU 113 ? A LEU 113 54 1 Y 1 C GLU 114 ? A GLU 114 55 1 Y 1 C ASP 115 ? A ASP 115 56 1 Y 1 C MET 116 ? A MET 116 57 1 Y 1 C PRO 117 ? A PRO 117 58 1 Y 1 C VAL 118 ? A VAL 118 59 1 Y 1 C ASP 119 ? A ASP 119 60 1 Y 1 C PRO 120 ? A PRO 120 61 1 Y 1 C ASP 121 ? A ASP 121 62 1 Y 1 C ASN 122 ? A ASN 122 63 1 Y 1 C GLU 123 ? A GLU 123 64 1 Y 1 C ALA 124 ? A ALA 124 65 1 Y 1 C TYR 125 ? A TYR 125 66 1 Y 1 C GLU 126 ? A GLU 126 67 1 Y 1 C MET 127 ? A MET 127 68 1 Y 1 C PRO 128 ? A PRO 128 69 1 Y 1 C SER 129 ? A SER 129 70 1 Y 1 C GLU 130 ? A GLU 130 71 1 Y 1 C GLU 131 ? A GLU 131 72 1 Y 1 C GLY 132 ? A GLY 132 73 1 Y 1 C TYR 133 ? A TYR 133 74 1 Y 1 C GLN 134 ? A GLN 134 75 1 Y 1 C ASP 135 ? A ASP 135 76 1 Y 1 C TYR 136 ? A TYR 136 77 1 Y 1 C GLU 137 ? A GLU 137 78 1 Y 1 C PRO 138 ? A PRO 138 79 1 Y 1 C GLU 139 ? A GLU 139 80 1 Y 1 C ALA 140 ? A ALA 140 81 1 Y 1 A MET 1 ? B MET 1 82 1 Y 1 A ASP 2 ? B ASP 2 83 1 Y 1 A VAL 3 ? B VAL 3 84 1 Y 1 A PHE 4 ? B PHE 4 85 1 Y 1 A MET 5 ? B MET 5 86 1 Y 1 A LYS 6 ? B LYS 6 87 1 Y 1 A GLY 7 ? B GLY 7 88 1 Y 1 A LEU 8 ? B LEU 8 89 1 Y 1 A SER 9 ? B SER 9 90 1 Y 1 A LYS 10 ? B LYS 10 91 1 Y 1 A ALA 11 ? B ALA 11 92 1 Y 1 A LYS 12 ? B LYS 12 93 1 Y 1 A GLU 13 ? B GLU 13 94 1 Y 1 A GLY 14 ? B GLY 14 95 1 Y 1 A VAL 15 ? B VAL 15 96 1 Y 1 A VAL 16 ? B VAL 16 97 1 Y 1 A ALA 17 ? B ALA 17 98 1 Y 1 A ALA 18 ? B ALA 18 99 1 Y 1 A ALA 19 ? B ALA 19 100 1 Y 1 A GLU 20 ? B GLU 20 101 1 Y 1 A LYS 21 ? B LYS 21 102 1 Y 1 A THR 22 ? B THR 22 103 1 Y 1 A LYS 23 ? B LYS 23 104 1 Y 1 A GLN 24 ? B GLN 24 105 1 Y 1 A GLY 25 ? B GLY 25 106 1 Y 1 A VAL 26 ? B VAL 26 107 1 Y 1 A ALA 27 ? B ALA 27 108 1 Y 1 A GLU 28 ? B GLU 28 109 1 Y 1 A ALA 29 ? B ALA 29 110 1 Y 1 A ALA 30 ? B ALA 30 111 1 Y 1 A GLY 31 ? B GLY 31 112 1 Y 1 A LYS 32 ? B LYS 32 113 1 Y 1 A THR 33 ? B THR 33 114 1 Y 1 A LYS 34 ? B LYS 34 115 1 Y 1 A GLU 35 ? B GLU 35 116 1 Y 1 A LYS 96 ? B LYS 96 117 1 Y 1 A LYS 97 ? B LYS 97 118 1 Y 1 A ASP 98 ? B ASP 98 119 1 Y 1 A GLN 99 ? B GLN 99 120 1 Y 1 A LEU 100 ? B LEU 100 121 1 Y 1 A GLY 101 ? B GLY 101 122 1 Y 1 A LYS 102 ? B LYS 102 123 1 Y 1 A ASN 103 ? B ASN 103 124 1 Y 1 A GLU 104 ? B GLU 104 125 1 Y 1 A GLU 105 ? B GLU 105 126 1 Y 1 A GLY 106 ? B GLY 106 127 1 Y 1 A ALA 107 ? B ALA 107 128 1 Y 1 A PRO 108 ? B PRO 108 129 1 Y 1 A GLN 109 ? B GLN 109 130 1 Y 1 A GLU 110 ? B GLU 110 131 1 Y 1 A GLY 111 ? B GLY 111 132 1 Y 1 A ILE 112 ? B ILE 112 133 1 Y 1 A LEU 113 ? B LEU 113 134 1 Y 1 A GLU 114 ? B GLU 114 135 1 Y 1 A ASP 115 ? B ASP 115 136 1 Y 1 A MET 116 ? B MET 116 137 1 Y 1 A PRO 117 ? B PRO 117 138 1 Y 1 A VAL 118 ? B VAL 118 139 1 Y 1 A ASP 119 ? B ASP 119 140 1 Y 1 A PRO 120 ? B PRO 120 141 1 Y 1 A ASP 121 ? B ASP 121 142 1 Y 1 A ASN 122 ? B ASN 122 143 1 Y 1 A GLU 123 ? B GLU 123 144 1 Y 1 A ALA 124 ? B ALA 124 145 1 Y 1 A TYR 125 ? B TYR 125 146 1 Y 1 A GLU 126 ? B GLU 126 147 1 Y 1 A MET 127 ? B MET 127 148 1 Y 1 A PRO 128 ? B PRO 128 149 1 Y 1 A SER 129 ? B SER 129 150 1 Y 1 A GLU 130 ? B GLU 130 151 1 Y 1 A GLU 131 ? B GLU 131 152 1 Y 1 A GLY 132 ? B GLY 132 153 1 Y 1 A TYR 133 ? B TYR 133 154 1 Y 1 A GLN 134 ? B GLN 134 155 1 Y 1 A ASP 135 ? B ASP 135 156 1 Y 1 A TYR 136 ? B TYR 136 157 1 Y 1 A GLU 137 ? B GLU 137 158 1 Y 1 A PRO 138 ? B PRO 138 159 1 Y 1 A GLU 139 ? B GLU 139 160 1 Y 1 A ALA 140 ? B ALA 140 161 1 Y 1 B MET 1 ? C MET 1 162 1 Y 1 B ASP 2 ? C ASP 2 163 1 Y 1 B VAL 3 ? C VAL 3 164 1 Y 1 B PHE 4 ? C PHE 4 165 1 Y 1 B MET 5 ? C MET 5 166 1 Y 1 B LYS 6 ? C LYS 6 167 1 Y 1 B GLY 7 ? C GLY 7 168 1 Y 1 B LEU 8 ? C LEU 8 169 1 Y 1 B SER 9 ? C SER 9 170 1 Y 1 B LYS 10 ? C LYS 10 171 1 Y 1 B ALA 11 ? C ALA 11 172 1 Y 1 B LYS 12 ? C LYS 12 173 1 Y 1 B GLU 13 ? C GLU 13 174 1 Y 1 B GLY 14 ? C GLY 14 175 1 Y 1 B VAL 15 ? C VAL 15 176 1 Y 1 B VAL 16 ? C VAL 16 177 1 Y 1 B ALA 17 ? C ALA 17 178 1 Y 1 B ALA 18 ? C ALA 18 179 1 Y 1 B ALA 19 ? C ALA 19 180 1 Y 1 B GLU 20 ? C GLU 20 181 1 Y 1 B LYS 21 ? C LYS 21 182 1 Y 1 B THR 22 ? C THR 22 183 1 Y 1 B LYS 23 ? C LYS 23 184 1 Y 1 B GLN 24 ? C GLN 24 185 1 Y 1 B GLY 25 ? C GLY 25 186 1 Y 1 B VAL 26 ? C VAL 26 187 1 Y 1 B ALA 27 ? C ALA 27 188 1 Y 1 B GLU 28 ? C GLU 28 189 1 Y 1 B ALA 29 ? C ALA 29 190 1 Y 1 B ALA 30 ? C ALA 30 191 1 Y 1 B GLY 31 ? C GLY 31 192 1 Y 1 B LYS 32 ? C LYS 32 193 1 Y 1 B THR 33 ? C THR 33 194 1 Y 1 B LYS 34 ? C LYS 34 195 1 Y 1 B GLU 35 ? C GLU 35 196 1 Y 1 B LYS 96 ? C LYS 96 197 1 Y 1 B LYS 97 ? C LYS 97 198 1 Y 1 B ASP 98 ? C ASP 98 199 1 Y 1 B GLN 99 ? C GLN 99 200 1 Y 1 B LEU 100 ? C LEU 100 201 1 Y 1 B GLY 101 ? C GLY 101 202 1 Y 1 B LYS 102 ? C LYS 102 203 1 Y 1 B ASN 103 ? C ASN 103 204 1 Y 1 B GLU 104 ? C GLU 104 205 1 Y 1 B GLU 105 ? C GLU 105 206 1 Y 1 B GLY 106 ? C GLY 106 207 1 Y 1 B ALA 107 ? C ALA 107 208 1 Y 1 B PRO 108 ? C PRO 108 209 1 Y 1 B GLN 109 ? C GLN 109 210 1 Y 1 B GLU 110 ? C GLU 110 211 1 Y 1 B GLY 111 ? C GLY 111 212 1 Y 1 B ILE 112 ? C ILE 112 213 1 Y 1 B LEU 113 ? C LEU 113 214 1 Y 1 B GLU 114 ? C GLU 114 215 1 Y 1 B ASP 115 ? C ASP 115 216 1 Y 1 B MET 116 ? C MET 116 217 1 Y 1 B PRO 117 ? C PRO 117 218 1 Y 1 B VAL 118 ? C VAL 118 219 1 Y 1 B ASP 119 ? C ASP 119 220 1 Y 1 B PRO 120 ? C PRO 120 221 1 Y 1 B ASP 121 ? C ASP 121 222 1 Y 1 B ASN 122 ? C ASN 122 223 1 Y 1 B GLU 123 ? C GLU 123 224 1 Y 1 B ALA 124 ? C ALA 124 225 1 Y 1 B TYR 125 ? C TYR 125 226 1 Y 1 B GLU 126 ? C GLU 126 227 1 Y 1 B MET 127 ? C MET 127 228 1 Y 1 B PRO 128 ? C PRO 128 229 1 Y 1 B SER 129 ? C SER 129 230 1 Y 1 B GLU 130 ? C GLU 130 231 1 Y 1 B GLU 131 ? C GLU 131 232 1 Y 1 B GLY 132 ? C GLY 132 233 1 Y 1 B TYR 133 ? C TYR 133 234 1 Y 1 B GLN 134 ? C GLN 134 235 1 Y 1 B ASP 135 ? C ASP 135 236 1 Y 1 B TYR 136 ? C TYR 136 237 1 Y 1 B GLU 137 ? C GLU 137 238 1 Y 1 B PRO 138 ? C PRO 138 239 1 Y 1 B GLU 139 ? C GLU 139 240 1 Y 1 B ALA 140 ? C ALA 140 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -1.24 _em_helical_entity.axial_rise_per_subunit 4.84 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Natural Science Foundation of China (NSFC)' China 31872716 1 'National Natural Science Foundation of China (NSFC)' China 82171421 2 'National Natural Science Foundation of China (NSFC)' China 91949118 3 'National Natural Science Foundation of China (NSFC)' China 81771372 4 'National Natural Science Foundation of China (NSFC)' China U1932204 5 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 #