HEADER HYDROLASE 28-SEP-22 8H09 TITLE STRUCTURE OF THE THERMOLABILE HEMOLYSIN FROM VIBRIO ALGINOLYTICUS (APO TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SGNH/GDSL HYDROLASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THERMOLABILE HEMOLYSIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO ALGINOLYTICUS; SOURCE 3 ORGANISM_TAXID: 663; SOURCE 4 ATCC: 17749; SOURCE 5 GENE: F0254_14065; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ESCHERICHIA COLI C43 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM13 KEYWDS VIBRIO, PHOSPHOLIPASE, SGNH HYDROLASE, GDSL LIPASE, TRANSFERASE, KEYWDS 2 HEMOLYSIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.MA,C.WANG REVDAT 1 16-AUG-23 8H09 0 JRNL AUTH C.WANG,C.LIU,X.ZHU,Q.PENG,Q.MA JRNL TITL CATALYTIC SITE FLEXIBILITY FACILITATES THE SUBSTRATE AND JRNL TITL 2 CATALYTIC PROMISCUITY OF VIBRIO DUAL LIPASE/TRANSFERASE. JRNL REF NAT COMMUN V. 14 4795 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37558668 JRNL DOI 10.1038/S41467-023-40455-Y REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 68495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3351 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5035 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1970 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4811 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.1990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.45 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 224 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 169 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.56300 REMARK 3 B22 (A**2) : -8.30300 REMARK 3 B33 (A**2) : 4.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.51400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.128 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.113 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.130 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6484 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8774 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2206 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 182 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 942 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6484 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 818 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7862 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.15 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|30 - A|418 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.7850 -5.9093 -12.8564 REMARK 3 T TENSOR REMARK 3 T11: -0.0956 T22: -0.1220 REMARK 3 T33: -0.0804 T12: -0.0099 REMARK 3 T13: 0.0003 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.0146 L22: 0.5989 REMARK 3 L33: 0.9724 L12: 0.0867 REMARK 3 L13: 0.1024 L23: -0.3088 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: 0.0340 S13: -0.0373 REMARK 3 S21: -0.0167 S22: 0.0706 S23: 0.1124 REMARK 3 S31: 0.0278 S32: -0.0015 S33: -0.0090 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|31 - B|416 } REMARK 3 ORIGIN FOR THE GROUP (A): -24.2400 -36.6440 -27.1788 REMARK 3 T TENSOR REMARK 3 T11: -0.1300 T22: -0.1507 REMARK 3 T33: -0.1434 T12: 0.0423 REMARK 3 T13: -0.0222 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.3566 L22: 0.5325 REMARK 3 L33: 2.3469 L12: -0.2751 REMARK 3 L13: 0.7634 L23: -0.2140 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.1879 S13: -0.0914 REMARK 3 S21: -0.0031 S22: 0.0041 S23: 0.1181 REMARK 3 S31: -0.2391 S32: -0.3173 S33: 0.0065 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8H09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 04-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300032510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97876 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAR 15, 2019, BUILT ON REMARK 200 20190315 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68600 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.809 REMARK 200 RESOLUTION RANGE LOW (A) : 53.783 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.70900 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 6JKZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTAL OF VALTLH WAS GROWN IN A REMARK 280 DROP CONTAINING 1.0 UL OF PROTEIN SOLUTION (10 MG/ML IN THE REMARK 280 BUFFER 10 MM HEPES PH 7.5, 150 MM NACL, 1 MM DTT, 200 MM NDSB201) REMARK 280 AND 1.0 UL OF RESERVOIR SOLUTION (0.1 M TRIS PH 8.5, 20.5% REMARK 280 POLYETHYLENE GLYCOL 4000, 20% POLYETHYLENE GLYCOL 400, AND 0.1 M REMARK 280 MGCL2)., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.61900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 ALA A 20 REMARK 465 GLU A 21 REMARK 465 GLU A 22 REMARK 465 PRO A 23 REMARK 465 THR A 24 REMARK 465 LEU A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 MET A 29 REMARK 465 GLY A 204 REMARK 465 ALA A 205 REMARK 465 ALA A 206 REMARK 465 GLY A 207 REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 GLN A 210 REMARK 465 TYR A 211 REMARK 465 ILE A 212 REMARK 465 ALA A 213 REMARK 465 LEU A 214 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 LYS B 3 REMARK 465 LYS B 4 REMARK 465 THR B 5 REMARK 465 ILE B 6 REMARK 465 THR B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 THR B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 ILE B 19 REMARK 465 ALA B 20 REMARK 465 GLU B 21 REMARK 465 GLU B 22 REMARK 465 PRO B 23 REMARK 465 THR B 24 REMARK 465 LEU B 25 REMARK 465 SER B 26 REMARK 465 PRO B 27 REMARK 465 ALA B 28 REMARK 465 MET B 29 REMARK 465 VAL B 30 REMARK 465 ARG B 417 REMARK 465 PHE B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 86 132.25 -35.04 REMARK 500 PHE A 87 -4.89 65.18 REMARK 500 LYS A 88 55.42 -91.23 REMARK 500 ASP A 109 55.29 38.76 REMARK 500 MET A 139 52.54 -105.27 REMARK 500 ASP A 152 -146.76 -121.81 REMARK 500 LEU A 176 65.80 31.21 REMARK 500 SER A 180 -177.45 -173.55 REMARK 500 ASP A 390 -159.41 -122.17 REMARK 500 ASP B 152 -150.98 -121.21 REMARK 500 LEU B 176 66.50 30.05 REMARK 500 SER B 180 -177.32 -173.09 REMARK 500 ILE B 212 -53.61 68.48 REMARK 500 ASP B 390 -159.92 -120.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 509 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 263 OD1 REMARK 620 2 HOH A 640 O 96.0 REMARK 620 3 HOH A 658 O 91.7 104.4 REMARK 620 4 HOH A 708 O 87.6 171.0 83.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 208 OE2 REMARK 620 2 ASP B 263 OD1 100.5 REMARK 620 3 HOH B 640 O 92.5 88.5 REMARK 620 4 HOH B 647 O 93.3 94.8 172.7 REMARK 620 5 HOH B 667 O 168.3 88.0 79.6 94.0 REMARK 620 N 1 2 3 4 DBREF1 8H09 A 1 418 UNP A0A7Y4B3E8_VIBAL DBREF2 8H09 A A0A7Y4B3E8 1 418 DBREF1 8H09 B 1 418 UNP A0A7Y4B3E8_VIBAL DBREF2 8H09 B A0A7Y4B3E8 1 418 SEQADV 8H09 MET A -1 UNP A0A7Y4B3E INITIATING METHIONINE SEQADV 8H09 GLY A 0 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS A 419 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS A 420 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS A 421 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS A 422 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS A 423 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS A 424 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 MET B -1 UNP A0A7Y4B3E INITIATING METHIONINE SEQADV 8H09 GLY B 0 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS B 419 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS B 420 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS B 421 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS B 422 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS B 423 UNP A0A7Y4B3E EXPRESSION TAG SEQADV 8H09 HIS B 424 UNP A0A7Y4B3E EXPRESSION TAG SEQRES 1 A 426 MET GLY MET MET LYS LYS THR ILE THR LEU LEU THR ALA SEQRES 2 A 426 LEU LEU PRO LEU ALA SER ALA ILE ALA GLU GLU PRO THR SEQRES 3 A 426 LEU SER PRO ALA MET VAL SER ALA ALA GLU VAL VAL SER SEQRES 4 A 426 ALA GLN GLU ASN GLN THR TYR THR TYR VAL ARG CYS TRP SEQRES 5 A 426 TYR ARG THR SER HIS SER LYS ASP ASP ALA ALA THR ASP SEQRES 6 A 426 TRP LYS TRP ALA LYS ASN GLN ASP GLY SER ASP PHE THR SEQRES 7 A 426 ILE ASP GLY TYR TRP TRP SER SER VAL SER PHE LYS ASN SEQRES 8 A 426 MET PHE TYR THR ASN THR SER GLN ASN VAL ILE ARG GLN SEQRES 9 A 426 ARG CYS GLU GLU THR LEU ASP LEU ALA ASN GLU ASN ALA SEQRES 10 A 426 ASP ILE THR PHE PHE ALA ALA ASP ASN ARG TYR SER TYR SEQRES 11 A 426 ASN HIS THR ILE TRP SER ASN ASP ALA ALA MET GLN PRO SEQRES 12 A 426 ASP GLN ILE ASN LYS VAL VAL ALA LEU GLY ASP SER LEU SEQRES 13 A 426 SER ASP THR GLY ASN ILE PHE ASN ALA SER GLN TRP ARG SEQRES 14 A 426 PHE PRO ASN PRO ASN SER TRP PHE LEU GLY HIS PHE SER SEQRES 15 A 426 ASN GLY PHE VAL TRP THR GLU TYR VAL ALA LYS ALA LYS SEQRES 16 A 426 ASN LEU PRO LEU TYR ASN TRP ALA VAL GLY GLY ALA ALA SEQRES 17 A 426 GLY GLU ASN GLN TYR ILE ALA LEU THR GLY VAL GLY GLU SEQRES 18 A 426 GLN VAL SER SER TYR LEU THR TYR THR LYS LEU ALA LYS SEQRES 19 A 426 ASN TYR ASN PRO ALA ASN THR LEU PHE THR LEU GLU PHE SEQRES 20 A 426 GLY LEU ASN ASP PHE MET ASN TYR ASN ARG SER VAL PRO SEQRES 21 A 426 GLU VAL LYS ALA ASP TYR ALA GLU ALA LEU ILE ARG LEU SEQRES 22 A 426 THR ASP ALA GLY ALA LYS ASN PHE MET LEU MET THR LEU SEQRES 23 A 426 PRO ASP ALA THR LYS ALA PRO GLN PHE LYS TYR SER THR SEQRES 24 A 426 GLN GLU GLU ILE GLU THR ILE ARG ALA LYS VAL LEU LYS SEQRES 25 A 426 MET ASN GLU PHE ILE LYS ALA GLN ALA MET TYR TYR LYS SEQRES 26 A 426 ALA GLN GLY TYR ASN ILE ALA LEU PHE ASP THR HIS ALA SEQRES 27 A 426 LEU PHE GLU LYS LEU THR SER ALA PRO GLU GLU HIS GLY SEQRES 28 A 426 PHE VAL ASN ALA SER ASP PRO CYS LEU ASP ILE ASN ARG SEQRES 29 A 426 SER SER SER VAL ASP TYR MET TYR THR HIS SER LEU ARG SEQRES 30 A 426 SER GLU CYS ALA ALA SER GLY ALA ASP LYS PHE VAL PHE SEQRES 31 A 426 TRP ASP VAL THR HIS PRO THR THR ALA THR HIS ARG TYR SEQRES 32 A 426 VAL ALA GLU LYS MET LEU GLU SER SER ASN ASN LEU GLU SEQRES 33 A 426 GLU PHE ARG PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 426 MET GLY MET MET LYS LYS THR ILE THR LEU LEU THR ALA SEQRES 2 B 426 LEU LEU PRO LEU ALA SER ALA ILE ALA GLU GLU PRO THR SEQRES 3 B 426 LEU SER PRO ALA MET VAL SER ALA ALA GLU VAL VAL SER SEQRES 4 B 426 ALA GLN GLU ASN GLN THR TYR THR TYR VAL ARG CYS TRP SEQRES 5 B 426 TYR ARG THR SER HIS SER LYS ASP ASP ALA ALA THR ASP SEQRES 6 B 426 TRP LYS TRP ALA LYS ASN GLN ASP GLY SER ASP PHE THR SEQRES 7 B 426 ILE ASP GLY TYR TRP TRP SER SER VAL SER PHE LYS ASN SEQRES 8 B 426 MET PHE TYR THR ASN THR SER GLN ASN VAL ILE ARG GLN SEQRES 9 B 426 ARG CYS GLU GLU THR LEU ASP LEU ALA ASN GLU ASN ALA SEQRES 10 B 426 ASP ILE THR PHE PHE ALA ALA ASP ASN ARG TYR SER TYR SEQRES 11 B 426 ASN HIS THR ILE TRP SER ASN ASP ALA ALA MET GLN PRO SEQRES 12 B 426 ASP GLN ILE ASN LYS VAL VAL ALA LEU GLY ASP SER LEU SEQRES 13 B 426 SER ASP THR GLY ASN ILE PHE ASN ALA SER GLN TRP ARG SEQRES 14 B 426 PHE PRO ASN PRO ASN SER TRP PHE LEU GLY HIS PHE SER SEQRES 15 B 426 ASN GLY PHE VAL TRP THR GLU TYR VAL ALA LYS ALA LYS SEQRES 16 B 426 ASN LEU PRO LEU TYR ASN TRP ALA VAL GLY GLY ALA ALA SEQRES 17 B 426 GLY GLU ASN GLN TYR ILE ALA LEU THR GLY VAL GLY GLU SEQRES 18 B 426 GLN VAL SER SER TYR LEU THR TYR THR LYS LEU ALA LYS SEQRES 19 B 426 ASN TYR ASN PRO ALA ASN THR LEU PHE THR LEU GLU PHE SEQRES 20 B 426 GLY LEU ASN ASP PHE MET ASN TYR ASN ARG SER VAL PRO SEQRES 21 B 426 GLU VAL LYS ALA ASP TYR ALA GLU ALA LEU ILE ARG LEU SEQRES 22 B 426 THR ASP ALA GLY ALA LYS ASN PHE MET LEU MET THR LEU SEQRES 23 B 426 PRO ASP ALA THR LYS ALA PRO GLN PHE LYS TYR SER THR SEQRES 24 B 426 GLN GLU GLU ILE GLU THR ILE ARG ALA LYS VAL LEU LYS SEQRES 25 B 426 MET ASN GLU PHE ILE LYS ALA GLN ALA MET TYR TYR LYS SEQRES 26 B 426 ALA GLN GLY TYR ASN ILE ALA LEU PHE ASP THR HIS ALA SEQRES 27 B 426 LEU PHE GLU LYS LEU THR SER ALA PRO GLU GLU HIS GLY SEQRES 28 B 426 PHE VAL ASN ALA SER ASP PRO CYS LEU ASP ILE ASN ARG SEQRES 29 B 426 SER SER SER VAL ASP TYR MET TYR THR HIS SER LEU ARG SEQRES 30 B 426 SER GLU CYS ALA ALA SER GLY ALA ASP LYS PHE VAL PHE SEQRES 31 B 426 TRP ASP VAL THR HIS PRO THR THR ALA THR HIS ARG TYR SEQRES 32 B 426 VAL ALA GLU LYS MET LEU GLU SER SER ASN ASN LEU GLU SEQRES 33 B 426 GLU PHE ARG PHE HIS HIS HIS HIS HIS HIS HET 1PE A 501 16 HET 1PE A 502 16 HET 1PS A 503 13 HET 1PS A 504 13 HET PEG A 505 7 HET PEG A 506 7 HET PEG A 507 7 HET PEG A 508 7 HET MG A 509 1 HET 1PE B 501 16 HET 1PE B 502 16 HET 1PE B 503 16 HET 1PS B 504 13 HET 1PS B 505 13 HET PEG B 506 7 HET MG B 507 1 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETSYN 1PE PEG400 HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS FORMUL 3 1PE 5(C10 H22 O6) FORMUL 5 1PS 4(C8 H11 N O3 S) FORMUL 7 PEG 5(C4 H10 O3) FORMUL 11 MG 2(MG 2+) FORMUL 19 HOH *307(H2 O) HELIX 1 AA1 SER A 31 GLU A 40 1 10 HELIX 2 AA2 SER A 96 ASP A 109 1 14 HELIX 3 AA3 GLY A 158 SER A 164 1 7 HELIX 4 AA4 VAL A 184 LYS A 193 1 10 HELIX 5 AA5 GLY A 216 THR A 228 1 13 HELIX 6 AA6 LYS A 229 ALA A 231 5 3 HELIX 7 AA7 ASN A 235 ALA A 237 5 3 HELIX 8 AA8 GLY A 246 TYR A 253 1 8 HELIX 9 AA9 SER A 256 ALA A 274 1 19 HELIX 10 AB1 ASP A 286 SER A 296 5 11 HELIX 11 AB2 THR A 297 GLN A 325 1 29 HELIX 12 AB3 ASP A 333 ALA A 344 1 12 HELIX 13 AB4 PRO A 345 GLY A 349 5 5 HELIX 14 AB5 SER A 364 TYR A 370 5 7 HELIX 15 AB6 ARG A 375 GLY A 382 1 8 HELIX 16 AB7 ALA A 383 PHE A 386 5 4 HELIX 17 AB8 THR A 395 GLU A 414 1 20 HELIX 18 AB9 ALA B 32 GLU B 40 1 9 HELIX 19 AC1 SER B 96 ASP B 109 1 14 HELIX 20 AC2 GLY B 158 SER B 164 1 7 HELIX 21 AC3 VAL B 184 LYS B 193 1 10 HELIX 22 AC4 GLY B 216 LEU B 230 1 15 HELIX 23 AC5 ASN B 235 ALA B 237 5 3 HELIX 24 AC6 GLY B 246 ASN B 252 1 7 HELIX 25 AC7 SER B 256 ALA B 274 1 19 HELIX 26 AC8 ASP B 286 SER B 296 5 11 HELIX 27 AC9 THR B 297 GLN B 325 1 29 HELIX 28 AD1 ASP B 333 ALA B 344 1 12 HELIX 29 AD2 PRO B 345 GLY B 349 5 5 HELIX 30 AD3 SER B 364 TYR B 370 5 7 HELIX 31 AD4 ARG B 375 GLY B 382 1 8 HELIX 32 AD5 ALA B 383 PHE B 386 5 4 HELIX 33 AD6 THR B 395 SER B 410 1 16 SHEET 1 AA1 3 THR A 62 TRP A 66 0 SHEET 2 AA1 3 THR A 43 ARG A 52 -1 N CYS A 49 O LYS A 65 SHEET 3 AA1 3 THR A 118 ALA A 122 -1 O THR A 118 N TRP A 50 SHEET 1 AA2 5 THR A 62 TRP A 66 0 SHEET 2 AA2 5 THR A 43 ARG A 52 -1 N CYS A 49 O LYS A 65 SHEET 3 AA2 5 THR A 76 TRP A 82 -1 O GLY A 79 N THR A 43 SHEET 4 AA2 5 MET A 90 THR A 93 -1 O TYR A 92 N TYR A 80 SHEET 5 AA2 5 ILE A 132 SER A 134 1 O TRP A 133 N PHE A 91 SHEET 1 AA3 5 LEU A 197 ASN A 199 0 SHEET 2 AA3 5 LYS A 146 LEU A 150 1 N VAL A 147 O TYR A 198 SHEET 3 AA3 5 THR A 239 LEU A 243 1 O LEU A 240 N LYS A 146 SHEET 4 AA3 5 ASN A 278 MET A 282 1 O ASN A 278 N PHE A 241 SHEET 5 AA3 5 ASN A 328 PHE A 332 1 O ALA A 330 N LEU A 281 SHEET 1 AA4 3 THR B 62 TRP B 66 0 SHEET 2 AA4 3 THR B 43 ARG B 52 -1 N CYS B 49 O LYS B 65 SHEET 3 AA4 3 THR B 118 ALA B 122 -1 O THR B 118 N TRP B 50 SHEET 1 AA5 5 THR B 62 TRP B 66 0 SHEET 2 AA5 5 THR B 43 ARG B 52 -1 N CYS B 49 O LYS B 65 SHEET 3 AA5 5 THR B 76 TRP B 81 -1 O GLY B 79 N THR B 43 SHEET 4 AA5 5 PHE B 91 THR B 93 -1 O TYR B 92 N TYR B 80 SHEET 5 AA5 5 ILE B 132 SER B 134 1 O TRP B 133 N PHE B 91 SHEET 1 AA6 5 LEU B 197 ASN B 199 0 SHEET 2 AA6 5 LYS B 146 GLY B 151 1 N VAL B 147 O TYR B 198 SHEET 3 AA6 5 THR B 239 GLU B 244 1 O LEU B 240 N LYS B 146 SHEET 4 AA6 5 ASN B 278 MET B 282 1 O MET B 280 N PHE B 241 SHEET 5 AA6 5 ASN B 328 PHE B 332 1 O ALA B 330 N LEU B 281 SSBOND 1 CYS A 49 CYS A 104 1555 1555 2.04 SSBOND 2 CYS A 357 CYS A 378 1555 1555 2.03 SSBOND 3 CYS B 49 CYS B 104 1555 1555 2.05 SSBOND 4 CYS B 357 CYS B 378 1555 1555 2.02 LINK OD1 ASP A 263 MG MG A 509 1555 1555 1.98 LINK MG MG A 509 O HOH A 640 1555 1555 2.15 LINK MG MG A 509 O HOH A 658 1555 1555 2.09 LINK MG MG A 509 O HOH A 708 1555 1555 2.19 LINK OE2 GLU B 208 MG MG B 507 1555 1555 1.99 LINK OD1 ASP B 263 MG MG B 507 1555 1555 1.92 LINK MG MG B 507 O HOH B 640 1555 1555 1.98 LINK MG MG B 507 O HOH B 647 1555 1555 1.96 LINK MG MG B 507 O HOH B 667 1555 1555 2.13 CISPEP 1 PHE A 168 PRO A 169 0 -4.51 CISPEP 2 PHE B 168 PRO B 169 0 -3.97 CRYST1 65.932 71.238 83.645 90.00 101.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015167 0.000000 0.003036 0.00000 SCALE2 0.000000 0.014037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012192 0.00000