HEADER MEMBRANE PROTEIN 02-OCT-22 8H1D TITLE SOLID-STATE NMR STRUCTURE OF AQUAPORIN Z IN ITS NATIVE CELLULAR TITLE 2 MEMBRANES COMPND MOL_ID: 1; COMPND 2 MOLECULE: AQUAPORIN Z; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 GENE: AQPZ, ECBD_2719; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MEMBRANE PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR H.XIE,Y.ZHAO,W.ZHAO,Y.CHEN,M.LIU,J.YANG REVDAT 3 15-MAY-24 8H1D 1 REMARK REVDAT 2 15-NOV-23 8H1D 1 JRNL REVDAT 1 09-NOV-22 8H1D 0 JRNL AUTH H.XIE,Y.ZHAO,W.ZHAO,Y.CHEN,M.LIU,J.YANG JRNL TITL SOLID-STATE NMR STRUCTURE DETERMINATION OF A MEMBRANE JRNL TITL 2 PROTEIN IN E. COLI CELLULAR INNER MEMBRANE. JRNL REF SCI ADV V. 9 H4168 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37910616 JRNL DOI 10.1126/SCIADV.ADH4168 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.47 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WE CALCULATED 1000 MONOMER STRUCTURES REMARK 3 USING 1007 DISTANCE RESTRAINTS, 214 ANGLE RESTRAINTS PREDICTED REMARK 3 FROM TALOS+ USING ASSIGNED 15N AND 13C CHEMICAL SHIFTS, AND 132 REMARK 3 INTRAHELICAL HYDROGEN BONDS PREDICTED FROM BOTH THE CHEMICAL REMARK 3 SHIFT INDEX AND TALOS+. REMARK 4 REMARK 4 8H1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300032617. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 8.0; 8.0 REMARK 210 IONIC STRENGTH : 1; 1 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 29.4 % W/W [U-13C; U-15N] REMARK 210 AQUAPORIN Z, 5 MM TRIS-CL PH 8.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NCA; 2D DARR; 3D NCACX; 3D REMARK 210 NCOCX; 3D CONCA; 2D 100MS CORD; REMARK 210 2D 500MS CORD REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRFAM-SPARKY 2.6, TOPSPIN 3.6, REMARK 210 NMRPIPE 3.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 199 H GLU A 203 1.37 REMARK 500 O VAL A 211 H GLY A 215 1.48 REMARK 500 O GLU A 203 H TRP A 206 1.49 REMARK 500 O GLY A 122 H SER A 125 1.51 REMARK 500 O ALA A 103 H GLY A 105 1.52 REMARK 500 O MET A 50 H VAL A 54 1.54 REMARK 500 O GLN A 197 H GLY A 199 1.56 REMARK 500 O GLY A 199 N GLU A 203 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 29 149.52 -39.19 REMARK 500 1 SER A 58 -40.00 -139.24 REMARK 500 1 ASN A 63 132.06 -172.67 REMARK 500 1 PHE A 76 82.35 -150.37 REMARK 500 1 SER A 104 25.45 -58.59 REMARK 500 1 THR A 107 135.26 -32.29 REMARK 500 1 ALA A 117 -17.02 62.69 REMARK 500 1 SER A 118 -44.57 167.74 REMARK 500 1 ASN A 119 21.78 -166.14 REMARK 500 1 SER A 125 109.73 -57.48 REMARK 500 1 SER A 130 -174.06 -51.35 REMARK 500 1 LYS A 155 32.37 33.56 REMARK 500 1 ALA A 159 86.17 155.11 REMARK 500 1 SER A 184 -99.08 -57.86 REMARK 500 1 VAL A 185 -40.83 -169.91 REMARK 500 2 SER A 58 -38.95 -135.18 REMARK 500 2 PRO A 77 161.95 -38.15 REMARK 500 2 SER A 104 24.23 -56.87 REMARK 500 2 THR A 107 140.57 -27.83 REMARK 500 2 ASN A 119 -99.60 -80.86 REMARK 500 2 TYR A 129 21.54 -63.93 REMARK 500 2 SER A 130 -172.57 -50.81 REMARK 500 2 LYS A 155 24.94 38.54 REMARK 500 2 ALA A 157 73.33 -113.61 REMARK 500 2 ALA A 159 68.18 -170.74 REMARK 500 2 ASN A 182 26.99 81.07 REMARK 500 2 THR A 183 149.50 -35.76 REMARK 500 2 VAL A 185 -113.97 63.80 REMARK 500 3 PHE A 62 54.38 76.22 REMARK 500 3 ASN A 63 128.50 -175.96 REMARK 500 3 ASN A 119 -158.42 -91.32 REMARK 500 3 GLU A 123 -35.00 -36.12 REMARK 500 3 SER A 125 101.88 -37.18 REMARK 500 3 LYS A 155 29.68 34.64 REMARK 500 3 ALA A 159 68.63 178.88 REMARK 500 3 PHE A 161 -71.83 -44.88 REMARK 500 3 THR A 183 118.14 -31.45 REMARK 500 3 VAL A 185 -67.26 61.09 REMARK 500 4 PHE A 62 -5.06 67.07 REMARK 500 4 PHE A 76 87.11 -153.02 REMARK 500 4 PHE A 116 25.51 -74.00 REMARK 500 4 ALA A 117 12.35 141.98 REMARK 500 4 SER A 118 -106.33 -59.82 REMARK 500 4 TYR A 129 21.59 -66.66 REMARK 500 4 LYS A 155 35.31 33.24 REMARK 500 4 ALA A 159 83.50 -177.41 REMARK 500 4 ASN A 182 76.17 23.48 REMARK 500 4 VAL A 185 -69.46 69.16 REMARK 500 4 GLN A 197 -25.07 -28.95 REMARK 500 5 LYS A 4 -90.31 34.56 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36514 RELATED DB: BMRB REMARK 900 SOLID-STATE NMR STRUCTURE OF AQUAPORIN Z IN ITS NATIVE CELLULAR REMARK 900 MEMBRANES DBREF1 8H1D A 1 231 UNP A0A140NDF1_ECOBD DBREF2 8H1D A A0A140NDF1 1 231 SEQADV 8H1D MET A -11 UNP A0A140NDF INITIATING METHIONINE SEQADV 8H1D GLY A -10 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D SER A -9 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D SER A -8 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D HIS A -7 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D HIS A -6 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D HIS A -5 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D HIS A -4 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D HIS A -3 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D HIS A -2 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D GLU A -1 UNP A0A140NDF EXPRESSION TAG SEQADV 8H1D PHE A 0 UNP A0A140NDF EXPRESSION TAG SEQRES 1 A 243 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLU PHE MET SEQRES 2 A 243 PHE ARG LYS LEU ALA ALA GLU CYS PHE GLY THR PHE TRP SEQRES 3 A 243 LEU VAL PHE GLY GLY CYS GLY SER ALA VAL LEU ALA ALA SEQRES 4 A 243 GLY PHE PRO GLU LEU GLY ILE GLY PHE ALA GLY VAL ALA SEQRES 5 A 243 LEU ALA PHE GLY LEU THR VAL LEU THR MET ALA PHE ALA SEQRES 6 A 243 VAL GLY HIS ILE SER GLY GLY HIS PHE ASN PRO ALA VAL SEQRES 7 A 243 THR ILE GLY LEU TRP ALA GLY GLY ARG PHE PRO ALA LYS SEQRES 8 A 243 GLU VAL VAL GLY TYR VAL ILE ALA GLN VAL VAL GLY GLY SEQRES 9 A 243 ILE VAL ALA ALA ALA LEU LEU TYR LEU ILE ALA SER GLY SEQRES 10 A 243 LYS THR GLY PHE ASP ALA ALA ALA SER GLY PHE ALA SER SEQRES 11 A 243 ASN GLY TYR GLY GLU HIS SER PRO GLY GLY TYR SER MET SEQRES 12 A 243 LEU SER ALA LEU VAL VAL GLU LEU VAL LEU SER ALA GLY SEQRES 13 A 243 PHE LEU LEU VAL ILE HIS GLY ALA THR ASP LYS PHE ALA SEQRES 14 A 243 PRO ALA GLY PHE ALA PRO ILE ALA ILE GLY LEU ALA LEU SEQRES 15 A 243 THR LEU ILE HIS LEU ILE SER ILE PRO VAL THR ASN THR SEQRES 16 A 243 SER VAL ASN PRO ALA ARG SER THR ALA VAL ALA ILE PHE SEQRES 17 A 243 GLN GLY GLY TRP ALA LEU GLU GLN LEU TRP PHE PHE TRP SEQRES 18 A 243 VAL VAL PRO ILE VAL GLY GLY ILE ILE GLY GLY LEU ILE SEQRES 19 A 243 TYR ARG THR LEU LEU GLU LYS ARG ASP HELIX 1 AA1 MET A 1 GLY A 28 1 28 HELIX 2 AA2 ILE A 34 SER A 58 1 25 HELIX 3 AA3 ASN A 63 GLY A 73 1 11 HELIX 4 AA4 PRO A 77 SER A 104 1 28 HELIX 5 AA5 ASP A 110 GLY A 115 1 6 HELIX 6 AA6 SER A 130 THR A 153 1 24 HELIX 7 AA7 GLY A 160 ASN A 182 1 23 HELIX 8 AA8 ASN A 186 GLY A 198 1 13 HELIX 9 AA9 GLY A 199 GLN A 204 1 6 HELIX 10 AB1 LEU A 205 ASP A 231 1 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1