HEADER TRANSFERASE 05-OCT-22 8H27 TITLE CRYSTAL STRUCTURE OF MNMM FROM S. AUREUS COMPLEXED WITH SAM (2.04 A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16S RRNA (CYTOSINE(1402)-N(4))-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RRNA METHYLASE YTQB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 STRAIN: NCTC 8325 / PS 47; SOURCE 5 GENE: SAOUHSC_01878; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLATE31 KEYWDS METHYLTRNASFERASE TRNA POST-TRANSCRIPTIONAL MODIFICATION MNMC KEYWDS 2 MNM5(S2)U, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KIM,G.CHO,J.LEE REVDAT 3 01-MAY-24 8H27 1 REMARK REVDAT 2 22-MAR-23 8H27 1 JRNL REVDAT 1 25-JAN-23 8H27 0 JRNL AUTH G.CHO,J.LEE,J.KIM JRNL TITL IDENTIFICATION OF A NOVEL 5-AMINOMETHYL-2-THIOURIDINE JRNL TITL 2 METHYLTRANSFERASE IN TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 51 1971 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36762482 JRNL DOI 10.1093/NAR/GKAD048 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 44157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2248 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 11 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.812 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5774 ; 0.010 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 5500 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7817 ; 1.313 ; 1.867 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12687 ; 1.068 ; 2.816 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 701 ; 6.189 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;37.711 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1015 ;14.357 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 909 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6483 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1210 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2840 ; 2.676 ; 3.077 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2840 ; 2.675 ; 3.077 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3529 ; 3.971 ; 4.590 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3530 ; 3.971 ; 4.592 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2934 ; 3.181 ; 3.455 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2934 ; 3.181 ; 3.455 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4289 ; 4.772 ; 5.050 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6192 ; 7.055 ;37.428 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6110 ; 7.001 ;36.947 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 53.3830 -37.7850 5.0800 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.1320 REMARK 3 T33: 0.0346 T12: 0.0171 REMARK 3 T13: -0.0000 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.0527 L22: 1.5634 REMARK 3 L33: 1.7268 L12: -0.1282 REMARK 3 L13: 0.2910 L23: -0.5899 REMARK 3 S TENSOR REMARK 3 S11: -0.0615 S12: -0.1112 S13: 0.1302 REMARK 3 S21: 0.0469 S22: 0.0701 S23: 0.1510 REMARK 3 S31: 0.0512 S32: -0.2518 S33: -0.0085 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4160 -5.8990 20.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1654 REMARK 3 T33: 0.1446 T12: 0.0713 REMARK 3 T13: -0.0575 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.5942 L22: 2.8321 REMARK 3 L33: 4.2528 L12: -0.7057 REMARK 3 L13: 1.1106 L23: 0.4748 REMARK 3 S TENSOR REMARK 3 S11: -0.1413 S12: -0.1809 S13: 0.2145 REMARK 3 S21: 0.4744 S22: 0.1498 S23: -0.1887 REMARK 3 S31: -0.1367 S32: 0.1565 S33: -0.0085 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 189 REMARK 3 ORIGIN FOR THE GROUP (A): 60.2410 -21.2100 -23.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.2915 T22: 0.3318 REMARK 3 T33: 0.2662 T12: -0.0392 REMARK 3 T13: 0.1244 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 0.9147 L22: 3.1672 REMARK 3 L33: 6.0053 L12: -0.9264 REMARK 3 L13: 0.2206 L23: 0.1179 REMARK 3 S TENSOR REMARK 3 S11: 0.1377 S12: 0.2455 S13: 0.4463 REMARK 3 S21: -0.7198 S22: 0.0171 S23: -0.4676 REMARK 3 S31: -0.4639 S32: 0.6699 S33: -0.1548 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 189 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4180 -6.4830 -7.2100 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.0351 REMARK 3 T33: 0.0625 T12: 0.0276 REMARK 3 T13: -0.0041 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.9460 L22: 1.0820 REMARK 3 L33: 2.9317 L12: -0.1581 REMARK 3 L13: 0.6968 L23: -0.3796 REMARK 3 S TENSOR REMARK 3 S11: 0.0701 S12: 0.0278 S13: -0.2038 REMARK 3 S21: -0.0786 S22: -0.0306 S23: -0.1015 REMARK 3 S31: 0.2941 S32: 0.2640 S33: -0.0396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 8H27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300031637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 43.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 36.4 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 2.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.9.02 REMARK 200 STARTING MODEL: ALPHAFOLD MODEL (UNIPROT: Q2FXG9) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M BIS-TRIS PH 6.5, AND 25% W/V PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.50450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.25675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.75225 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 107 REMARK 465 SER A 108 REMARK 465 SER A 142 REMARK 465 GLU A 143 REMARK 465 GLY A 144 REMARK 465 GLN A 145 REMARK 465 ILE A 146 REMARK 465 GLU A 147 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 GLY A 195 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 GLY B 195 REMARK 465 TYR C 101 REMARK 465 LEU C 102 REMARK 465 PRO C 103 REMARK 465 LYS C 104 REMARK 465 GLY C 105 REMARK 465 ASP C 106 REMARK 465 LYS C 107 REMARK 465 SER C 108 REMARK 465 HIS C 139 REMARK 465 GLY C 140 REMARK 465 HIS C 141 REMARK 465 SER C 142 REMARK 465 GLU C 143 REMARK 465 GLY C 144 REMARK 465 GLN C 145 REMARK 465 ILE C 146 REMARK 465 GLU C 147 REMARK 465 ARG C 174 REMARK 465 ASN C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 190 REMARK 465 HIS C 191 REMARK 465 HIS C 192 REMARK 465 HIS C 193 REMARK 465 HIS C 194 REMARK 465 GLY C 195 REMARK 465 LYS D 104 REMARK 465 GLY D 105 REMARK 465 ASP D 106 REMARK 465 LYS D 107 REMARK 465 SER D 108 REMARK 465 ILE D 109 REMARK 465 VAL D 110 REMARK 465 THR D 111 REMARK 465 LYS D 112 REMARK 465 PRO D 113 REMARK 465 SER D 142 REMARK 465 GLU D 143 REMARK 465 GLY D 144 REMARK 465 GLN D 145 REMARK 465 ILE D 146 REMARK 465 HIS D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 HIS D 193 REMARK 465 HIS D 194 REMARK 465 GLY D 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 139 25.84 -144.43 REMARK 500 LEU C 99 53.84 -94.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 188 HIS C 189 148.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 331 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 363 DISTANCE = 5.88 ANGSTROMS DBREF 8H27 A 1 187 UNP Q2FXG9 Q2FXG9_STAA8 1 187 DBREF 8H27 B 1 187 UNP Q2FXG9 Q2FXG9_STAA8 1 187 DBREF 8H27 C 1 187 UNP Q2FXG9 Q2FXG9_STAA8 1 187 DBREF 8H27 D 1 187 UNP Q2FXG9 Q2FXG9_STAA8 1 187 SEQADV 8H27 GLY A 188 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS A 189 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS A 190 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS A 191 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS A 192 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS A 193 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS A 194 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 GLY A 195 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 GLY B 188 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS B 189 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS B 190 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS B 191 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS B 192 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS B 193 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS B 194 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 GLY B 195 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 GLY C 188 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS C 189 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS C 190 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS C 191 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS C 192 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS C 193 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS C 194 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 GLY C 195 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 GLY D 188 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS D 189 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS D 190 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS D 191 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS D 192 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS D 193 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 HIS D 194 UNP Q2FXG9 EXPRESSION TAG SEQADV 8H27 GLY D 195 UNP Q2FXG9 EXPRESSION TAG SEQRES 1 A 195 MET LYS LEU GLU ARG ILE LEU PRO PHE SER LYS THR LEU SEQRES 2 A 195 ILE LYS GLN HIS ILE THR PRO GLU SER ILE VAL VAL ASP SEQRES 3 A 195 ALA THR CYS GLY ASN GLY ASN ASP THR LEU PHE LEU ALA SEQRES 4 A 195 GLU GLN VAL PRO GLU GLY HIS VAL TYR GLY PHE ASP ILE SEQRES 5 A 195 GLN ASP LEU ALA LEU GLU ASN THR ARG ASP LYS VAL LYS SEQRES 6 A 195 ASP PHE ASN HIS VAL SER LEU ILE LYS ASP GLY HIS GLU SEQRES 7 A 195 ASN ILE GLU HIS HIS ILE ASN ASP ALA HIS LYS GLY HIS SEQRES 8 A 195 ILE ASP ALA ALA ILE PHE ASN LEU GLY TYR LEU PRO LYS SEQRES 9 A 195 GLY ASP LYS SER ILE VAL THR LYS PRO ASP THR THR ILE SEQRES 10 A 195 GLN ALA ILE ASN SER LEU LEU SER LEU MET SER ILE GLU SEQRES 11 A 195 GLY ILE ILE VAL LEU VAL ILE TYR HIS GLY HIS SER GLU SEQRES 12 A 195 GLY GLN ILE GLU LYS HIS ALA LEU LEU ASP TYR LEU SER SEQRES 13 A 195 THR LEU ASP GLN LYS HIS ALA GLN VAL LEU GLN TYR GLN SEQRES 14 A 195 PHE LEU ASN GLN ARG ASN HIS ALA PRO PHE ILE CYS ALA SEQRES 15 A 195 ILE GLU LYS ILE SER GLY HIS HIS HIS HIS HIS HIS GLY SEQRES 1 B 195 MET LYS LEU GLU ARG ILE LEU PRO PHE SER LYS THR LEU SEQRES 2 B 195 ILE LYS GLN HIS ILE THR PRO GLU SER ILE VAL VAL ASP SEQRES 3 B 195 ALA THR CYS GLY ASN GLY ASN ASP THR LEU PHE LEU ALA SEQRES 4 B 195 GLU GLN VAL PRO GLU GLY HIS VAL TYR GLY PHE ASP ILE SEQRES 5 B 195 GLN ASP LEU ALA LEU GLU ASN THR ARG ASP LYS VAL LYS SEQRES 6 B 195 ASP PHE ASN HIS VAL SER LEU ILE LYS ASP GLY HIS GLU SEQRES 7 B 195 ASN ILE GLU HIS HIS ILE ASN ASP ALA HIS LYS GLY HIS SEQRES 8 B 195 ILE ASP ALA ALA ILE PHE ASN LEU GLY TYR LEU PRO LYS SEQRES 9 B 195 GLY ASP LYS SER ILE VAL THR LYS PRO ASP THR THR ILE SEQRES 10 B 195 GLN ALA ILE ASN SER LEU LEU SER LEU MET SER ILE GLU SEQRES 11 B 195 GLY ILE ILE VAL LEU VAL ILE TYR HIS GLY HIS SER GLU SEQRES 12 B 195 GLY GLN ILE GLU LYS HIS ALA LEU LEU ASP TYR LEU SER SEQRES 13 B 195 THR LEU ASP GLN LYS HIS ALA GLN VAL LEU GLN TYR GLN SEQRES 14 B 195 PHE LEU ASN GLN ARG ASN HIS ALA PRO PHE ILE CYS ALA SEQRES 15 B 195 ILE GLU LYS ILE SER GLY HIS HIS HIS HIS HIS HIS GLY SEQRES 1 C 195 MET LYS LEU GLU ARG ILE LEU PRO PHE SER LYS THR LEU SEQRES 2 C 195 ILE LYS GLN HIS ILE THR PRO GLU SER ILE VAL VAL ASP SEQRES 3 C 195 ALA THR CYS GLY ASN GLY ASN ASP THR LEU PHE LEU ALA SEQRES 4 C 195 GLU GLN VAL PRO GLU GLY HIS VAL TYR GLY PHE ASP ILE SEQRES 5 C 195 GLN ASP LEU ALA LEU GLU ASN THR ARG ASP LYS VAL LYS SEQRES 6 C 195 ASP PHE ASN HIS VAL SER LEU ILE LYS ASP GLY HIS GLU SEQRES 7 C 195 ASN ILE GLU HIS HIS ILE ASN ASP ALA HIS LYS GLY HIS SEQRES 8 C 195 ILE ASP ALA ALA ILE PHE ASN LEU GLY TYR LEU PRO LYS SEQRES 9 C 195 GLY ASP LYS SER ILE VAL THR LYS PRO ASP THR THR ILE SEQRES 10 C 195 GLN ALA ILE ASN SER LEU LEU SER LEU MET SER ILE GLU SEQRES 11 C 195 GLY ILE ILE VAL LEU VAL ILE TYR HIS GLY HIS SER GLU SEQRES 12 C 195 GLY GLN ILE GLU LYS HIS ALA LEU LEU ASP TYR LEU SER SEQRES 13 C 195 THR LEU ASP GLN LYS HIS ALA GLN VAL LEU GLN TYR GLN SEQRES 14 C 195 PHE LEU ASN GLN ARG ASN HIS ALA PRO PHE ILE CYS ALA SEQRES 15 C 195 ILE GLU LYS ILE SER GLY HIS HIS HIS HIS HIS HIS GLY SEQRES 1 D 195 MET LYS LEU GLU ARG ILE LEU PRO PHE SER LYS THR LEU SEQRES 2 D 195 ILE LYS GLN HIS ILE THR PRO GLU SER ILE VAL VAL ASP SEQRES 3 D 195 ALA THR CYS GLY ASN GLY ASN ASP THR LEU PHE LEU ALA SEQRES 4 D 195 GLU GLN VAL PRO GLU GLY HIS VAL TYR GLY PHE ASP ILE SEQRES 5 D 195 GLN ASP LEU ALA LEU GLU ASN THR ARG ASP LYS VAL LYS SEQRES 6 D 195 ASP PHE ASN HIS VAL SER LEU ILE LYS ASP GLY HIS GLU SEQRES 7 D 195 ASN ILE GLU HIS HIS ILE ASN ASP ALA HIS LYS GLY HIS SEQRES 8 D 195 ILE ASP ALA ALA ILE PHE ASN LEU GLY TYR LEU PRO LYS SEQRES 9 D 195 GLY ASP LYS SER ILE VAL THR LYS PRO ASP THR THR ILE SEQRES 10 D 195 GLN ALA ILE ASN SER LEU LEU SER LEU MET SER ILE GLU SEQRES 11 D 195 GLY ILE ILE VAL LEU VAL ILE TYR HIS GLY HIS SER GLU SEQRES 12 D 195 GLY GLN ILE GLU LYS HIS ALA LEU LEU ASP TYR LEU SER SEQRES 13 D 195 THR LEU ASP GLN LYS HIS ALA GLN VAL LEU GLN TYR GLN SEQRES 14 D 195 PHE LEU ASN GLN ARG ASN HIS ALA PRO PHE ILE CYS ALA SEQRES 15 D 195 ILE GLU LYS ILE SER GLY HIS HIS HIS HIS HIS HIS GLY HET SAM B 201 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 5 SAM C15 H22 N6 O5 S FORMUL 6 HOH *355(H2 O) HELIX 1 AA1 ARG A 5 GLN A 16 1 12 HELIX 2 AA2 GLY A 32 VAL A 42 1 11 HELIX 3 AA3 GLN A 53 LYS A 65 1 13 HELIX 4 AA4 GLY A 76 ILE A 84 5 9 HELIX 5 AA5 GLY A 100 LEU A 102 5 3 HELIX 6 AA6 THR A 115 LEU A 126 1 12 HELIX 7 AA7 HIS A 149 LEU A 158 1 10 HELIX 8 AA8 ARG B 5 GLN B 16 1 12 HELIX 9 AA9 GLY B 32 VAL B 42 1 11 HELIX 10 AB1 GLN B 53 LYS B 65 1 13 HELIX 11 AB2 GLY B 76 ILE B 84 5 9 HELIX 12 AB3 ASN B 85 LYS B 89 5 5 HELIX 13 AB4 LYS B 112 LEU B 126 1 15 HELIX 14 AB5 HIS B 141 THR B 157 1 17 HELIX 15 AB6 ARG C 5 GLN C 16 1 12 HELIX 16 AB7 GLY C 32 VAL C 42 1 11 HELIX 17 AB8 GLN C 53 LYS C 65 1 13 HELIX 18 AB9 GLY C 76 ILE C 84 5 9 HELIX 19 AC1 THR C 115 LEU C 126 1 12 HELIX 20 AC2 HIS C 149 LEU C 158 1 10 HELIX 21 AC3 ARG D 5 GLN D 16 1 12 HELIX 22 AC4 GLY D 32 VAL D 42 1 11 HELIX 23 AC5 GLN D 53 LYS D 65 1 13 HELIX 24 AC6 GLY D 76 ILE D 84 5 9 HELIX 25 AC7 ASN D 85 LYS D 89 5 5 HELIX 26 AC8 GLY D 100 LEU D 102 5 3 HELIX 27 AC9 THR D 115 LEU D 126 1 12 HELIX 28 AD1 LYS D 148 LEU D 158 1 11 SHEET 1 AA114 VAL A 70 ILE A 73 0 SHEET 2 AA114 HIS A 46 PHE A 50 1 N GLY A 49 O SER A 71 SHEET 3 AA114 ILE A 23 ASP A 26 1 N ASP A 26 O TYR A 48 SHEET 4 AA114 ILE A 92 ASN A 98 1 O ASP A 93 N ILE A 23 SHEET 5 AA114 MET A 127 ILE A 137 1 O VAL A 134 N ALA A 95 SHEET 6 AA114 PHE A 179 LYS A 185 -1 O CYS A 181 N LEU A 135 SHEET 7 AA114 ALA A 163 PHE A 170 -1 N LEU A 166 O ALA A 182 SHEET 8 AA114 ALA C 163 PHE C 170 -1 O GLN C 169 N GLN A 167 SHEET 9 AA114 PHE C 179 LYS C 185 -1 O ALA C 182 N LEU C 166 SHEET 10 AA114 MET C 127 ILE C 137 -1 N LEU C 135 O CYS C 181 SHEET 11 AA114 ILE C 92 LEU C 99 1 N ALA C 95 O VAL C 134 SHEET 12 AA114 ILE C 23 ASP C 26 1 N ILE C 23 O ASP C 93 SHEET 13 AA114 HIS C 46 PHE C 50 1 O TYR C 48 N ASP C 26 SHEET 14 AA114 VAL C 70 ILE C 73 1 O SER C 71 N GLY C 49 SHEET 1 AA214 VAL B 70 LYS B 74 0 SHEET 2 AA214 HIS B 46 ASP B 51 1 N GLY B 49 O SER B 71 SHEET 3 AA214 ILE B 23 ASP B 26 1 N ASP B 26 O TYR B 48 SHEET 4 AA214 ILE B 92 ASN B 98 1 O ASP B 93 N ILE B 23 SHEET 5 AA214 MET B 127 ILE B 137 1 O VAL B 134 N ALA B 95 SHEET 6 AA214 PHE B 179 LYS B 185 -1 O CYS B 181 N LEU B 135 SHEET 7 AA214 ALA B 163 PHE B 170 -1 N LEU B 166 O ALA B 182 SHEET 8 AA214 ALA D 163 PHE D 170 -1 O GLN D 169 N GLN B 167 SHEET 9 AA214 PHE D 179 LYS D 185 -1 O ALA D 182 N LEU D 166 SHEET 10 AA214 MET D 127 ILE D 137 -1 N LEU D 135 O CYS D 181 SHEET 11 AA214 ILE D 92 ASN D 98 1 N ALA D 95 O VAL D 134 SHEET 12 AA214 ILE D 23 ASP D 26 1 N ILE D 23 O ASP D 93 SHEET 13 AA214 HIS D 46 PHE D 50 1 O TYR D 48 N ASP D 26 SHEET 14 AA214 VAL D 70 ILE D 73 1 O SER D 71 N GLY D 49 CRYST1 114.015 114.015 67.009 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014923 0.00000