HEADER CELL CYCLE 11-OCT-22 8H4R TITLE THE CRYSTAL STRUCTURE OF CDK3 AND CYCLINE1 COMPLEX WITH DINACICLIB TITLE 2 FROM BIORTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME,CYCLIN- COMPND 3 DEPENDENT KINASE 3; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GST 26,SJ26 ANTIGEN,SJGST,CELL DIVISION PROTEIN KINASE 3; COMPND 6 EC: 2.5.1.18,2.7.11.22; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: G1/S-SPECIFIC CYCLIN-E1; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA JAPONICUM, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE, HUMAN; SOURCE 4 ORGANISM_TAXID: 6182, 9606; SOURCE 5 GENE: CDK3, CDKN3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CCNE1, CCNE; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS COMPLEX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR W.GUI,F.WANG,W.CHENG,J.GAO,Y.HUANG,Z.OUYANG REVDAT 2 16-OCT-24 8H4R 1 REMARK REVDAT 1 11-OCT-23 8H4R 0 JRNL AUTH W.GUI,F.WANG,W.CHENG,J.GAO,Y.HUANG,Z.OUYANG JRNL TITL THE CRYSTAL STRUCTURE OF CDK3 AND CYCLINE1 COMPLEX WITH JRNL TITL 2 DINACICLIB FROM BIORTUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 27237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.085 REMARK 3 FREE R VALUE TEST SET COUNT : 1385 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1912 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57100 REMARK 3 B22 (A**2) : 0.57100 REMARK 3 B33 (A**2) : -1.85100 REMARK 3 B12 (A**2) : 0.28500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.409 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.316 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4778 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4460 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6480 ; 1.129 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10394 ; 0.361 ; 1.561 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 5.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ; 7.838 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 851 ;14.849 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5229 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 937 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1049 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 44 ; 0.156 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2354 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 163 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2250 ; 5.273 ; 3.495 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2250 ; 5.273 ; 3.495 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2810 ; 7.939 ; 5.229 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2811 ; 7.939 ; 5.231 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2528 ; 6.865 ; 4.105 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2529 ; 6.864 ; 4.106 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3668 ;10.180 ; 5.906 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3669 ;10.179 ; 5.907 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8H4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300032784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 44.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M MGSO4, 0.1M MES PH 6.60, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.39400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.39400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.39400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -227 REMARK 465 SER A -226 REMARK 465 PRO A -225 REMARK 465 ILE A -224 REMARK 465 LEU A -223 REMARK 465 GLY A -222 REMARK 465 TYR A -221 REMARK 465 TRP A -220 REMARK 465 LYS A -219 REMARK 465 ILE A -218 REMARK 465 LYS A -217 REMARK 465 GLY A -216 REMARK 465 LEU A -215 REMARK 465 VAL A -214 REMARK 465 GLN A -213 REMARK 465 PRO A -212 REMARK 465 THR A -211 REMARK 465 ARG A -210 REMARK 465 LEU A -209 REMARK 465 LEU A -208 REMARK 465 LEU A -207 REMARK 465 GLU A -206 REMARK 465 TYR A -205 REMARK 465 LEU A -204 REMARK 465 GLU A -203 REMARK 465 GLU A -202 REMARK 465 LYS A -201 REMARK 465 TYR A -200 REMARK 465 GLU A -199 REMARK 465 GLU A -198 REMARK 465 HIS A -197 REMARK 465 LEU A -196 REMARK 465 TYR A -195 REMARK 465 GLU A -194 REMARK 465 ARG A -193 REMARK 465 ASP A -192 REMARK 465 GLU A -191 REMARK 465 GLY A -190 REMARK 465 ASP A -189 REMARK 465 LYS A -188 REMARK 465 TRP A -187 REMARK 465 ARG A -186 REMARK 465 ASN A -185 REMARK 465 LYS A -184 REMARK 465 LYS A -183 REMARK 465 PHE A -182 REMARK 465 GLU A -181 REMARK 465 LEU A -180 REMARK 465 GLY A -179 REMARK 465 LEU A -178 REMARK 465 GLU A -177 REMARK 465 PHE A -176 REMARK 465 PRO A -175 REMARK 465 ASN A -174 REMARK 465 LEU A -173 REMARK 465 PRO A -172 REMARK 465 TYR A -171 REMARK 465 TYR A -170 REMARK 465 ILE A -169 REMARK 465 ASP A -168 REMARK 465 GLY A -167 REMARK 465 ASP A -166 REMARK 465 VAL A -165 REMARK 465 LYS A -164 REMARK 465 LEU A -163 REMARK 465 THR A -162 REMARK 465 GLN A -161 REMARK 465 SER A -160 REMARK 465 MET A -159 REMARK 465 ALA A -158 REMARK 465 ILE A -157 REMARK 465 ILE A -156 REMARK 465 ARG A -155 REMARK 465 TYR A -154 REMARK 465 ILE A -153 REMARK 465 ALA A -152 REMARK 465 ASP A -151 REMARK 465 LYS A -150 REMARK 465 HIS A -149 REMARK 465 ASN A -148 REMARK 465 MET A -147 REMARK 465 LEU A -146 REMARK 465 GLY A -145 REMARK 465 GLY A -144 REMARK 465 CYS A -143 REMARK 465 PRO A -142 REMARK 465 LYS A -141 REMARK 465 GLU A -140 REMARK 465 ARG A -139 REMARK 465 ALA A -138 REMARK 465 GLU A -137 REMARK 465 ILE A -136 REMARK 465 SER A -135 REMARK 465 MET A -134 REMARK 465 LEU A -133 REMARK 465 GLU A -132 REMARK 465 GLY A -131 REMARK 465 ALA A -130 REMARK 465 VAL A -129 REMARK 465 LEU A -128 REMARK 465 ASP A -127 REMARK 465 ILE A -126 REMARK 465 ARG A -125 REMARK 465 TYR A -124 REMARK 465 GLY A -123 REMARK 465 VAL A -122 REMARK 465 SER A -121 REMARK 465 ARG A -120 REMARK 465 ILE A -119 REMARK 465 ALA A -118 REMARK 465 TYR A -117 REMARK 465 SER A -116 REMARK 465 LYS A -115 REMARK 465 ASP A -114 REMARK 465 PHE A -113 REMARK 465 GLU A -112 REMARK 465 THR A -111 REMARK 465 LEU A -110 REMARK 465 LYS A -109 REMARK 465 VAL A -108 REMARK 465 ASP A -107 REMARK 465 PHE A -106 REMARK 465 LEU A -105 REMARK 465 SER A -104 REMARK 465 LYS A -103 REMARK 465 LEU A -102 REMARK 465 PRO A -101 REMARK 465 GLU A -100 REMARK 465 MET A -99 REMARK 465 LEU A -98 REMARK 465 LYS A -97 REMARK 465 MET A -96 REMARK 465 PHE A -95 REMARK 465 GLU A -94 REMARK 465 ASP A -93 REMARK 465 ARG A -92 REMARK 465 LEU A -91 REMARK 465 CYS A -90 REMARK 465 HIS A -89 REMARK 465 LYS A -88 REMARK 465 THR A -87 REMARK 465 TYR A -86 REMARK 465 LEU A -85 REMARK 465 ASN A -84 REMARK 465 GLY A -83 REMARK 465 ASP A -82 REMARK 465 HIS A -81 REMARK 465 VAL A -80 REMARK 465 THR A -79 REMARK 465 HIS A -78 REMARK 465 PRO A -77 REMARK 465 ASP A -76 REMARK 465 PHE A -75 REMARK 465 MET A -74 REMARK 465 LEU A -73 REMARK 465 TYR A -72 REMARK 465 ASP A -71 REMARK 465 ALA A -70 REMARK 465 LEU A -69 REMARK 465 ASP A -68 REMARK 465 VAL A -67 REMARK 465 VAL A -66 REMARK 465 LEU A -65 REMARK 465 TYR A -64 REMARK 465 MET A -63 REMARK 465 ASP A -62 REMARK 465 PRO A -61 REMARK 465 MET A -60 REMARK 465 CYS A -59 REMARK 465 LEU A -58 REMARK 465 ASP A -57 REMARK 465 ALA A -56 REMARK 465 PHE A -55 REMARK 465 PRO A -54 REMARK 465 LYS A -53 REMARK 465 LEU A -52 REMARK 465 VAL A -51 REMARK 465 CYS A -50 REMARK 465 PHE A -49 REMARK 465 LYS A -48 REMARK 465 LYS A -47 REMARK 465 ARG A -46 REMARK 465 ILE A -45 REMARK 465 GLU A -44 REMARK 465 ALA A -43 REMARK 465 ILE A -42 REMARK 465 PRO A -41 REMARK 465 GLN A -40 REMARK 465 ILE A -39 REMARK 465 ASP A -38 REMARK 465 LYS A -37 REMARK 465 TYR A -36 REMARK 465 LEU A -35 REMARK 465 LYS A -34 REMARK 465 SER A -33 REMARK 465 SER A -32 REMARK 465 LYS A -31 REMARK 465 TYR A -30 REMARK 465 ILE A -29 REMARK 465 ALA A -28 REMARK 465 TRP A -27 REMARK 465 PRO A -26 REMARK 465 LEU A -25 REMARK 465 GLN A -24 REMARK 465 GLY A -23 REMARK 465 TRP A -22 REMARK 465 GLN A -21 REMARK 465 ALA A -20 REMARK 465 THR A -19 REMARK 465 PHE A -18 REMARK 465 GLY A -17 REMARK 465 GLY A -16 REMARK 465 GLY A -15 REMARK 465 ASP A -14 REMARK 465 HIS A -13 REMARK 465 PRO A -12 REMARK 465 PRO A -11 REMARK 465 LYS A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 VAL A -5 REMARK 465 LEU A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 PRO A 289 REMARK 465 GLU A 290 REMARK 465 PRO A 291 REMARK 465 SER A 292 REMARK 465 PRO A 293 REMARK 465 ALA A 294 REMARK 465 ALA A 295 REMARK 465 ARG A 296 REMARK 465 GLN A 297 REMARK 465 TYR A 298 REMARK 465 VAL A 299 REMARK 465 LEU A 300 REMARK 465 GLN A 301 REMARK 465 ARG A 302 REMARK 465 PHE A 303 REMARK 465 ARG A 304 REMARK 465 HIS A 305 REMARK 465 MET B 74 REMARK 465 ASP B 75 REMARK 465 TYR B 76 REMARK 465 LYS B 77 REMARK 465 ASP B 78 REMARK 465 ASP B 79 REMARK 465 ASP B 80 REMARK 465 ASP B 81 REMARK 465 LYS B 82 REMARK 465 HIS B 83 REMARK 465 HIS B 84 REMARK 465 HIS B 85 REMARK 465 HIS B 86 REMARK 465 HIS B 87 REMARK 465 HIS B 88 REMARK 465 GLU B 89 REMARK 465 ASN B 90 REMARK 465 LEU B 91 REMARK 465 TYR B 92 REMARK 465 PHE B 93 REMARK 465 GLN B 94 REMARK 465 GLY B 95 REMARK 465 ILE B 96 REMARK 465 ILE B 97 REMARK 465 ALA B 98 REMARK 465 PRO B 99 REMARK 465 SER B 100 REMARK 465 ARG B 101 REMARK 465 LYS B 377 REMARK 465 ALA B 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 3 32.77 -85.51 REMARK 500 LYS A 6 69.99 -65.90 REMARK 500 GLU A 8 174.77 179.60 REMARK 500 GLU A 73 -146.41 87.14 REMARK 500 ARG A 74 40.59 -87.50 REMARK 500 ASP A 127 56.79 -168.61 REMARK 500 ASP A 145 82.49 62.50 REMARK 500 VAL A 164 135.25 80.58 REMARK 500 THR A 181 -159.21 -119.86 REMARK 500 SER A 287 52.54 -108.56 REMARK 500 GLN B 269 43.60 -142.44 REMARK 500 SER B 308 -133.91 -153.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 157 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8H4R A -227 -10 UNP P08515 GST26_SCHJA 1 218 DBREF 8H4R A 1 305 UNP Q00526 CDK3_HUMAN 1 305 DBREF 8H4R B 96 378 UNP P24864 CCNE1_HUMAN 96 378 SEQADV 8H4R SER A -9 UNP P08515 LINKER SEQADV 8H4R ASP A -8 UNP P08515 LINKER SEQADV 8H4R LEU A -7 UNP P08515 LINKER SEQADV 8H4R GLU A -6 UNP P08515 LINKER SEQADV 8H4R VAL A -5 UNP P08515 LINKER SEQADV 8H4R LEU A -4 UNP P08515 LINKER SEQADV 8H4R PHE A -3 UNP P08515 LINKER SEQADV 8H4R GLN A -2 UNP P08515 LINKER SEQADV 8H4R GLY A -1 UNP P08515 LINKER SEQADV 8H4R PRO A 0 UNP P08515 LINKER SEQADV 8H4R MET B 74 UNP P24864 INITIATING METHIONINE SEQADV 8H4R ASP B 75 UNP P24864 EXPRESSION TAG SEQADV 8H4R TYR B 76 UNP P24864 EXPRESSION TAG SEQADV 8H4R LYS B 77 UNP P24864 EXPRESSION TAG SEQADV 8H4R ASP B 78 UNP P24864 EXPRESSION TAG SEQADV 8H4R ASP B 79 UNP P24864 EXPRESSION TAG SEQADV 8H4R ASP B 80 UNP P24864 EXPRESSION TAG SEQADV 8H4R ASP B 81 UNP P24864 EXPRESSION TAG SEQADV 8H4R LYS B 82 UNP P24864 EXPRESSION TAG SEQADV 8H4R HIS B 83 UNP P24864 EXPRESSION TAG SEQADV 8H4R HIS B 84 UNP P24864 EXPRESSION TAG SEQADV 8H4R HIS B 85 UNP P24864 EXPRESSION TAG SEQADV 8H4R HIS B 86 UNP P24864 EXPRESSION TAG SEQADV 8H4R HIS B 87 UNP P24864 EXPRESSION TAG SEQADV 8H4R HIS B 88 UNP P24864 EXPRESSION TAG SEQADV 8H4R GLU B 89 UNP P24864 EXPRESSION TAG SEQADV 8H4R ASN B 90 UNP P24864 EXPRESSION TAG SEQADV 8H4R LEU B 91 UNP P24864 EXPRESSION TAG SEQADV 8H4R TYR B 92 UNP P24864 EXPRESSION TAG SEQADV 8H4R PHE B 93 UNP P24864 EXPRESSION TAG SEQADV 8H4R GLN B 94 UNP P24864 EXPRESSION TAG SEQADV 8H4R GLY B 95 UNP P24864 EXPRESSION TAG SEQRES 1 A 533 MET SER PRO ILE LEU GLY TYR TRP LYS ILE LYS GLY LEU SEQRES 2 A 533 VAL GLN PRO THR ARG LEU LEU LEU GLU TYR LEU GLU GLU SEQRES 3 A 533 LYS TYR GLU GLU HIS LEU TYR GLU ARG ASP GLU GLY ASP SEQRES 4 A 533 LYS TRP ARG ASN LYS LYS PHE GLU LEU GLY LEU GLU PHE SEQRES 5 A 533 PRO ASN LEU PRO TYR TYR ILE ASP GLY ASP VAL LYS LEU SEQRES 6 A 533 THR GLN SER MET ALA ILE ILE ARG TYR ILE ALA ASP LYS SEQRES 7 A 533 HIS ASN MET LEU GLY GLY CYS PRO LYS GLU ARG ALA GLU SEQRES 8 A 533 ILE SER MET LEU GLU GLY ALA VAL LEU ASP ILE ARG TYR SEQRES 9 A 533 GLY VAL SER ARG ILE ALA TYR SER LYS ASP PHE GLU THR SEQRES 10 A 533 LEU LYS VAL ASP PHE LEU SER LYS LEU PRO GLU MET LEU SEQRES 11 A 533 LYS MET PHE GLU ASP ARG LEU CYS HIS LYS THR TYR LEU SEQRES 12 A 533 ASN GLY ASP HIS VAL THR HIS PRO ASP PHE MET LEU TYR SEQRES 13 A 533 ASP ALA LEU ASP VAL VAL LEU TYR MET ASP PRO MET CYS SEQRES 14 A 533 LEU ASP ALA PHE PRO LYS LEU VAL CYS PHE LYS LYS ARG SEQRES 15 A 533 ILE GLU ALA ILE PRO GLN ILE ASP LYS TYR LEU LYS SER SEQRES 16 A 533 SER LYS TYR ILE ALA TRP PRO LEU GLN GLY TRP GLN ALA SEQRES 17 A 533 THR PHE GLY GLY GLY ASP HIS PRO PRO LYS SER ASP LEU SEQRES 18 A 533 GLU VAL LEU PHE GLN GLY PRO MET ASP MET PHE GLN LYS SEQRES 19 A 533 VAL GLU LYS ILE GLY GLU GLY THR TYR GLY VAL VAL TYR SEQRES 20 A 533 LYS ALA LYS ASN ARG GLU THR GLY GLN LEU VAL ALA LEU SEQRES 21 A 533 LYS LYS ILE ARG LEU ASP LEU GLU MET GLU GLY VAL PRO SEQRES 22 A 533 SER THR ALA ILE ARG GLU ILE SER LEU LEU LYS GLU LEU SEQRES 23 A 533 LYS HIS PRO ASN ILE VAL ARG LEU LEU ASP VAL VAL HIS SEQRES 24 A 533 ASN GLU ARG LYS LEU TYR LEU VAL PHE GLU PHE LEU SER SEQRES 25 A 533 GLN ASP LEU LYS LYS TYR MET ASP SER THR PRO GLY SER SEQRES 26 A 533 GLU LEU PRO LEU HIS LEU ILE LYS SER TYR LEU PHE GLN SEQRES 27 A 533 LEU LEU GLN GLY VAL SER PHE CYS HIS SER HIS ARG VAL SEQRES 28 A 533 ILE HIS ARG ASP LEU LYS PRO GLN ASN LEU LEU ILE ASN SEQRES 29 A 533 GLU LEU GLY ALA ILE LYS LEU ALA ASP PHE GLY LEU ALA SEQRES 30 A 533 ARG ALA PHE GLY VAL PRO LEU ARG THR TYR TPO HIS GLU SEQRES 31 A 533 VAL VAL THR LEU TRP TYR ARG ALA PRO GLU ILE LEU LEU SEQRES 32 A 533 GLY SER LYS PHE TYR THR THR ALA VAL ASP ILE TRP SER SEQRES 33 A 533 ILE GLY CYS ILE PHE ALA GLU MET VAL THR ARG LYS ALA SEQRES 34 A 533 LEU PHE PRO GLY ASP SER GLU ILE ASP GLN LEU PHE ARG SEQRES 35 A 533 ILE PHE ARG MET LEU GLY THR PRO SER GLU ASP THR TRP SEQRES 36 A 533 PRO GLY VAL THR GLN LEU PRO ASP TYR LYS GLY SER PHE SEQRES 37 A 533 PRO LYS TRP THR ARG LYS GLY LEU GLU GLU ILE VAL PRO SEQRES 38 A 533 ASN LEU GLU PRO GLU GLY ARG ASP LEU LEU MET GLN LEU SEQRES 39 A 533 LEU GLN TYR ASP PRO SER GLN ARG ILE THR ALA LYS THR SEQRES 40 A 533 ALA LEU ALA HIS PRO TYR PHE SER SER PRO GLU PRO SER SEQRES 41 A 533 PRO ALA ALA ARG GLN TYR VAL LEU GLN ARG PHE ARG HIS SEQRES 1 B 305 MET ASP TYR LYS ASP ASP ASP ASP LYS HIS HIS HIS HIS SEQRES 2 B 305 HIS HIS GLU ASN LEU TYR PHE GLN GLY ILE ILE ALA PRO SEQRES 3 B 305 SER ARG GLY SER PRO LEU PRO VAL LEU SER TRP ALA ASN SEQRES 4 B 305 ARG GLU GLU VAL TRP LYS ILE MET LEU ASN LYS GLU LYS SEQRES 5 B 305 THR TYR LEU ARG ASP GLN HIS PHE LEU GLU GLN HIS PRO SEQRES 6 B 305 LEU LEU GLN PRO LYS MET ARG ALA ILE LEU LEU ASP TRP SEQRES 7 B 305 LEU MET GLU VAL CYS GLU VAL TYR LYS LEU HIS ARG GLU SEQRES 8 B 305 THR PHE TYR LEU ALA GLN ASP PHE PHE ASP ARG TYR MET SEQRES 9 B 305 ALA THR GLN GLU ASN VAL VAL LYS THR LEU LEU GLN LEU SEQRES 10 B 305 ILE GLY ILE SER SER LEU PHE ILE ALA ALA LYS LEU GLU SEQRES 11 B 305 GLU ILE TYR PRO PRO LYS LEU HIS GLN PHE ALA TYR VAL SEQRES 12 B 305 THR ASP GLY ALA CYS SER GLY ASP GLU ILE LEU THR MET SEQRES 13 B 305 GLU LEU MET ILE MET LYS ALA LEU LYS TRP ARG LEU SER SEQRES 14 B 305 PRO LEU THR ILE VAL SER TRP LEU ASN VAL TYR MET GLN SEQRES 15 B 305 VAL ALA TYR LEU ASN ASP LEU HIS GLU VAL LEU LEU PRO SEQRES 16 B 305 GLN TYR PRO GLN GLN ILE PHE ILE GLN ILE ALA GLU LEU SEQRES 17 B 305 LEU ASP LEU CYS VAL LEU ASP VAL ASP CYS LEU GLU PHE SEQRES 18 B 305 PRO TYR GLY ILE LEU ALA ALA SER ALA LEU TYR HIS PHE SEQRES 19 B 305 SER SER SER GLU LEU MET GLN LYS VAL SER GLY TYR GLN SEQRES 20 B 305 TRP CYS ASP ILE GLU ASN CYS VAL LYS TRP MET VAL PRO SEQRES 21 B 305 PHE ALA MET VAL ILE ARG GLU THR GLY SER SER LYS LEU SEQRES 22 B 305 LYS HIS PHE ARG GLY VAL ALA ASP GLU ASP ALA HIS ASN SEQRES 23 B 305 ILE GLN THR HIS ARG ASP SER LEU ASP LEU LEU ASP LYS SEQRES 24 B 305 ALA ARG ALA LYS LYS ALA MODRES 8H4R TPO A 160 THR MODIFIED RESIDUE HET TPO A 160 11 HET 1QK A 401 29 HET SO4 A 402 5 HET GOL A 403 6 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET MES B 406 12 HET GOL B 407 6 HETNAM TPO PHOSPHOTHREONINE HETNAM 1QK 3-[({3-ETHYL-5-[(2S)-2-(2-HYDROXYETHYL)PIPERIDIN-1- HETNAM 2 1QK YL]PYRAZOLO[1,5-A]PYRIMIDIN-7-YL}AMINO)METHYL]-1- HETNAM 3 1QK HYDROXYPYRIDINIUM HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN TPO PHOSPHONOTHREONINE HETSYN 1QK DINACICLIB HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 1QK C21 H29 N6 O2 1+ FORMUL 4 SO4 6(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 11 MES C6 H13 N O4 S FORMUL 13 HOH *273(H2 O) HELIX 1 AA1 ASP A 38 GLU A 40 5 3 HELIX 2 AA2 PRO A 45 LYS A 56 1 12 HELIX 3 AA3 LEU A 87 ASP A 92 1 6 HELIX 4 AA4 PRO A 95 LEU A 99 5 5 HELIX 5 AA5 PRO A 100 HIS A 121 1 22 HELIX 6 AA6 LYS A 129 GLN A 131 5 3 HELIX 7 AA7 THR A 165 ARG A 169 5 5 HELIX 8 AA8 ALA A 170 LEU A 175 1 6 HELIX 9 AA9 THR A 182 ARG A 199 1 18 HELIX 10 AB1 SER A 207 GLY A 220 1 14 HELIX 11 AB2 GLY A 229 LEU A 233 5 5 HELIX 12 AB3 GLY A 247 ILE A 251 5 5 HELIX 13 AB4 GLU A 256 LEU A 267 1 12 HELIX 14 AB5 THR A 276 ALA A 282 1 7 HELIX 15 AB6 HIS A 283 SER A 287 5 5 HELIX 16 AB7 ASN B 112 TYR B 127 1 16 HELIX 17 AB8 HIS B 132 GLN B 136 5 5 HELIX 18 AB9 GLN B 141 TYR B 159 1 19 HELIX 19 AC1 HIS B 162 ALA B 178 1 17 HELIX 20 AC2 VAL B 184 THR B 186 5 3 HELIX 21 AC3 LEU B 187 GLU B 204 1 18 HELIX 22 AC4 LYS B 209 VAL B 216 1 8 HELIX 23 AC5 SER B 222 LEU B 237 1 16 HELIX 24 AC6 THR B 245 TYR B 258 1 14 HELIX 25 AC7 PRO B 271 VAL B 286 1 16 HELIX 26 AC8 LEU B 287 PHE B 294 5 8 HELIX 27 AC9 PRO B 295 PHE B 307 1 13 HELIX 28 AD1 SER B 309 GLY B 318 1 10 HELIX 29 AD2 GLN B 320 MET B 331 1 12 HELIX 30 AD3 MET B 331 GLY B 342 1 12 HELIX 31 AD4 ALA B 353 ILE B 360 5 8 HELIX 32 AD5 ASP B 365 LYS B 376 1 12 SHEET 1 AA1 5 GLU A 8 GLU A 12 0 SHEET 2 AA1 5 VAL A 17 LYS A 22 -1 O VAL A 18 N GLY A 11 SHEET 3 AA1 5 LEU A 29 ARG A 36 -1 O LYS A 34 N VAL A 17 SHEET 4 AA1 5 LYS A 75 GLU A 81 -1 O PHE A 80 N ALA A 31 SHEET 5 AA1 5 LEU A 66 HIS A 71 -1 N LEU A 67 O VAL A 79 SHEET 1 AA2 3 GLN A 85 ASP A 86 0 SHEET 2 AA2 3 LEU A 133 ILE A 135 -1 O ILE A 135 N GLN A 85 SHEET 3 AA2 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 SHEET 1 AA3 2 VAL A 123 ILE A 124 0 SHEET 2 AA3 2 ARG A 150 ALA A 151 -1 O ARG A 150 N ILE A 124 LINK C TYR A 159 N TPO A 160 1555 1555 1.34 LINK C TPO A 160 N HIS A 161 1555 1555 1.34 CISPEP 1 VAL A 154 PRO A 155 0 -6.07 CRYST1 155.027 155.027 76.788 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006450 0.003724 0.000000 0.00000 SCALE2 0.000000 0.007448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013023 0.00000