HEADER TRANSFERASE 20-OCT-22 8H7H TITLE THE CRYSTAL STRUCTURE OF HUMAN ABL1 KINASE DOMAIN IN COMPLEX WITH TITLE 2 ABL1-A-EBA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 5 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, INHIBITOR, LYSINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.ZHU,Z.M.ZHANG REVDAT 3 07-FEB-24 8H7H 1 REMARK REVDAT 2 24-JAN-24 8H7H 1 COMPND HETNAM REVDAT 1 22-MAR-23 8H7H 0 JRNL AUTH P.CHEN,G.TANG,C.ZHU,J.SUN,X.WANG,M.XIANG,H.HUANG,W.WANG, JRNL AUTH 2 L.LI,Z.M.ZHANG,L.GAO,S.Q.YAO JRNL TITL 2-ETHYNYLBENZALDEHYDE-BASED, LYSINE-TARGETING IRREVERSIBLE JRNL TITL 2 COVALENT INHIBITORS FOR PROTEIN KINASES AND NONKINASES. JRNL REF J.AM.CHEM.SOC. 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 36774655 JRNL DOI 10.1021/JACS.2C11595 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.362 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 34902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.676 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.1941 - 5.4745 0.87 2320 140 0.1818 0.2212 REMARK 3 2 5.4745 - 4.3517 0.97 2462 151 0.1670 0.1866 REMARK 3 3 4.3517 - 3.8035 0.99 2504 152 0.1595 0.1769 REMARK 3 4 3.8035 - 3.4566 1.00 2512 151 0.1627 0.1937 REMARK 3 5 3.4566 - 3.2093 1.00 2483 147 0.1760 0.2044 REMARK 3 6 3.2093 - 3.0204 1.00 2489 150 0.1882 0.2230 REMARK 3 7 3.0204 - 2.8693 1.00 2477 149 0.1919 0.2418 REMARK 3 8 2.8693 - 2.7446 1.00 2477 149 0.2034 0.2356 REMARK 3 9 2.7446 - 2.6390 1.00 2475 148 0.1962 0.2490 REMARK 3 10 2.6390 - 2.5480 1.00 2436 146 0.1958 0.2627 REMARK 3 11 2.5480 - 2.4684 1.00 2456 148 0.1962 0.2644 REMARK 3 12 2.4684 - 2.3979 1.00 2486 149 0.1924 0.2311 REMARK 3 13 2.3979 - 2.3348 1.00 2427 146 0.2011 0.2769 REMARK 3 14 2.3348 - 2.2779 0.38 917 55 0.1998 0.2459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.226 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.625 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4377 REMARK 3 ANGLE : 0.701 5951 REMARK 3 CHIRALITY : 0.028 632 REMARK 3 PLANARITY : 0.003 746 REMARK 3 DIHEDRAL : 16.294 1578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0155 22.7085 -19.9183 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.2519 REMARK 3 T33: 0.3194 T12: -0.0313 REMARK 3 T13: -0.0065 T23: 0.1134 REMARK 3 L TENSOR REMARK 3 L11: 1.2635 L22: 0.5026 REMARK 3 L33: 0.8808 L12: -0.7324 REMARK 3 L13: 0.0447 L23: -0.1000 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: 0.1872 S13: 0.0268 REMARK 3 S21: -0.1629 S22: -0.1640 S23: -0.2665 REMARK 3 S31: -0.0253 S32: 0.2492 S33: 0.0320 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0248 19.1261 -9.9325 REMARK 3 T TENSOR REMARK 3 T11: 0.1122 T22: 0.0896 REMARK 3 T33: 0.1053 T12: -0.0124 REMARK 3 T13: -0.0509 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 0.1985 L22: 0.6359 REMARK 3 L33: 0.7485 L12: 0.0534 REMARK 3 L13: -0.0723 L23: -0.1874 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0705 S13: 0.1438 REMARK 3 S21: 0.0788 S22: -0.1087 S23: -0.1473 REMARK 3 S31: -0.0950 S32: 0.0692 S33: 0.0218 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8026 16.1762 -8.7079 REMARK 3 T TENSOR REMARK 3 T11: 0.0608 T22: 0.1082 REMARK 3 T33: 0.0773 T12: -0.0064 REMARK 3 T13: 0.0029 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.9019 L22: 1.2629 REMARK 3 L33: 0.6173 L12: 0.0082 REMARK 3 L13: 0.2648 L23: -0.0438 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.1437 S13: 0.1048 REMARK 3 S21: 0.2001 S22: 0.0493 S23: 0.2064 REMARK 3 S31: 0.0249 S32: -0.2854 S33: -0.0037 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3140 14.9720 -56.6218 REMARK 3 T TENSOR REMARK 3 T11: 0.7492 T22: 0.5258 REMARK 3 T33: 0.6745 T12: 0.0031 REMARK 3 T13: -0.0259 T23: -0.1329 REMARK 3 L TENSOR REMARK 3 L11: 0.2239 L22: 0.5248 REMARK 3 L33: 0.2528 L12: 0.3424 REMARK 3 L13: 0.2339 L23: 0.3596 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: 0.2110 S13: -0.5044 REMARK 3 S21: -0.1518 S22: -0.0999 S23: 0.1786 REMARK 3 S31: 0.2684 S32: -0.0173 S33: 0.0310 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5412 17.9525 -53.9615 REMARK 3 T TENSOR REMARK 3 T11: 0.5811 T22: 0.2950 REMARK 3 T33: 0.3990 T12: 0.0497 REMARK 3 T13: 0.1129 T23: -0.0873 REMARK 3 L TENSOR REMARK 3 L11: 1.1482 L22: 1.1789 REMARK 3 L33: 2.2420 L12: 0.0965 REMARK 3 L13: 0.3314 L23: 1.3004 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: 0.3290 S13: -0.4497 REMARK 3 S21: -0.2905 S22: -0.0257 S23: 0.1080 REMARK 3 S31: 0.4427 S32: -0.1868 S33: 0.0961 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 313 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9619 29.6572 -42.5570 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.1835 REMARK 3 T33: 0.1573 T12: 0.0578 REMARK 3 T13: 0.0176 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 1.3104 L22: 0.6728 REMARK 3 L33: 1.1104 L12: 0.0872 REMARK 3 L13: -0.4955 L23: -0.2910 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: 0.1704 S13: -0.1664 REMARK 3 S21: -0.2730 S22: 0.0240 S23: -0.0137 REMARK 3 S31: 0.2879 S32: -0.0671 S33: -0.0171 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 380 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0655 42.5797 -53.6595 REMARK 3 T TENSOR REMARK 3 T11: 0.2772 T22: 0.3010 REMARK 3 T33: -0.0310 T12: 0.1588 REMARK 3 T13: 0.1349 T23: 0.2410 REMARK 3 L TENSOR REMARK 3 L11: 0.1934 L22: 0.2846 REMARK 3 L33: 0.1945 L12: 0.1261 REMARK 3 L13: -0.1847 L23: -0.0956 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.2999 S13: 0.0509 REMARK 3 S21: -0.3916 S22: -0.0633 S23: -0.1519 REMARK 3 S31: -0.0742 S32: -0.0490 S33: 0.0183 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 454 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5276 46.2329 -38.9580 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: 0.1532 REMARK 3 T33: 0.2015 T12: 0.1291 REMARK 3 T13: 0.0147 T23: 0.1692 REMARK 3 L TENSOR REMARK 3 L11: 0.2586 L22: 0.7094 REMARK 3 L33: 0.6615 L12: -0.3289 REMARK 3 L13: 0.3487 L23: -0.5163 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: 0.0390 S13: 0.1144 REMARK 3 S21: 0.0685 S22: -0.0312 S23: -0.1381 REMARK 3 S31: -0.0862 S32: -0.0737 S33: -0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8H7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300032980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7W7Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M (NH4)2SO4, 0.1 M HEPES (PH 7.0) REMARK 280 AND 4% V/V 1,3-PROPANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.38850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.50700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.38850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.50700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 884 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 224 REMARK 465 ALA A 225 REMARK 465 MET A 226 REMARK 465 GLY A 227 REMARK 465 SER A 228 REMARK 465 SER A 229 REMARK 465 PRO A 230 REMARK 465 ASN A 231 REMARK 465 GLY B 224 REMARK 465 ALA B 225 REMARK 465 MET B 226 REMARK 465 GLY B 227 REMARK 465 SER B 228 REMARK 465 SER B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 231 REMARK 465 LYS B 274 REMARK 465 GLU B 275 REMARK 465 ASP B 276 REMARK 465 THR B 277 REMARK 465 MET B 278 REMARK 465 THR B 306 REMARK 465 ARG B 307 REMARK 465 GLU B 308 REMARK 465 PRO B 309 REMARK 465 PRO B 310 REMARK 465 PHE B 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 233 CG OD1 OD2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 TYR B 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 233 CG OD1 OD2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 470 THR B 240 OG1 CG2 REMARK 470 MET B 244 CG SD CE REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 HIS B 246 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 TRP B 261 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 261 CZ3 CH2 REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 GLU B 281 CG CD OE1 OE2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 LYS B 400 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 399 O HOH B 701 1.83 REMARK 500 O HOH A 764 O HOH A 946 1.84 REMARK 500 O HOH B 775 O HOH B 842 1.86 REMARK 500 O HOH A 826 O HOH A 914 1.86 REMARK 500 O HOH A 830 O HOH A 924 1.88 REMARK 500 O HOH A 893 O HOH A 916 1.89 REMARK 500 O1 QH9 B 601 O HOH B 702 1.93 REMARK 500 O1P PTR A 393 O HOH A 701 1.94 REMARK 500 O HOH A 857 O HOH A 879 1.95 REMARK 500 O HOH A 912 O HOH B 833 2.01 REMARK 500 OE1 GLU A 282 O HOH A 702 2.05 REMARK 500 O HOH A 798 O HOH A 806 2.06 REMARK 500 OH TYR B 257 O HOH B 703 2.06 REMARK 500 O HOH A 889 O HOH A 945 2.07 REMARK 500 O HOH A 724 O HOH A 905 2.07 REMARK 500 O HOH A 834 O HOH A 930 2.09 REMARK 500 O ARG B 332 O HOH B 704 2.09 REMARK 500 O HOH A 887 O HOH B 835 2.13 REMARK 500 OH TYR A 257 O HOH A 703 2.14 REMARK 500 OG1 THR A 389 O HOH A 704 2.15 REMARK 500 O HOH A 723 O HOH A 939 2.16 REMARK 500 O HOH B 762 O HOH B 857 2.17 REMARK 500 O HOH A 767 O HOH A 956 2.17 REMARK 500 O HOH A 867 O HOH A 885 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 274 -135.32 -89.13 REMARK 500 ARG A 362 -4.43 75.81 REMARK 500 ASP A 363 49.15 -144.91 REMARK 500 LYS B 245 -141.22 -138.03 REMARK 500 LYS B 263 -4.86 63.64 REMARK 500 SER B 265 32.01 -141.65 REMARK 500 ASN B 336 -162.69 -101.93 REMARK 500 ASP B 363 45.34 -145.00 REMARK 500 PRO B 402 95.26 -67.21 REMARK 500 LYS B 454 30.73 -93.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 976 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 895 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 896 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B 897 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B 898 DISTANCE = 9.93 ANGSTROMS DBREF 8H7H A 229 500 UNP P00519 ABL1_HUMAN 229 500 DBREF 8H7H B 229 500 UNP P00519 ABL1_HUMAN 229 500 SEQADV 8H7H GLY A 224 UNP P00519 EXPRESSION TAG SEQADV 8H7H ALA A 225 UNP P00519 EXPRESSION TAG SEQADV 8H7H MET A 226 UNP P00519 EXPRESSION TAG SEQADV 8H7H GLY A 227 UNP P00519 EXPRESSION TAG SEQADV 8H7H SER A 228 UNP P00519 EXPRESSION TAG SEQADV 8H7H GLY B 224 UNP P00519 EXPRESSION TAG SEQADV 8H7H ALA B 225 UNP P00519 EXPRESSION TAG SEQADV 8H7H MET B 226 UNP P00519 EXPRESSION TAG SEQADV 8H7H GLY B 227 UNP P00519 EXPRESSION TAG SEQADV 8H7H SER B 228 UNP P00519 EXPRESSION TAG SEQRES 1 A 277 GLY ALA MET GLY SER SER PRO ASN TYR ASP LYS TRP GLU SEQRES 2 A 277 MET GLU ARG THR ASP ILE THR MET LYS HIS LYS LEU GLY SEQRES 3 A 277 GLY GLY GLN TYR GLY GLU VAL TYR GLU GLY VAL TRP LYS SEQRES 4 A 277 LYS TYR SER LEU THR VAL ALA VAL LYS THR LEU LYS GLU SEQRES 5 A 277 ASP THR MET GLU VAL GLU GLU PHE LEU LYS GLU ALA ALA SEQRES 6 A 277 VAL MET LYS GLU ILE LYS HIS PRO ASN LEU VAL GLN LEU SEQRES 7 A 277 LEU GLY VAL CYS THR ARG GLU PRO PRO PHE TYR ILE ILE SEQRES 8 A 277 THR GLU PHE MET THR TYR GLY ASN LEU LEU ASP TYR LEU SEQRES 9 A 277 ARG GLU CYS ASN ARG GLN GLU VAL ASN ALA VAL VAL LEU SEQRES 10 A 277 LEU TYR MET ALA THR GLN ILE SER SER ALA MET GLU TYR SEQRES 11 A 277 LEU GLU LYS LYS ASN PHE ILE HIS ARG ASP LEU ALA ALA SEQRES 12 A 277 ARG ASN CYS LEU VAL GLY GLU ASN HIS LEU VAL LYS VAL SEQRES 13 A 277 ALA ASP PHE GLY LEU SER ARG LEU MET THR GLY ASP THR SEQRES 14 A 277 PTR THR ALA HIS ALA GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 15 A 277 THR ALA PRO GLU SER LEU ALA TYR ASN LYS PHE SER ILE SEQRES 16 A 277 LYS SER ASP VAL TRP ALA PHE GLY VAL LEU LEU TRP GLU SEQRES 17 A 277 ILE ALA THR TYR GLY MET SER PRO TYR PRO GLY ILE ASP SEQRES 18 A 277 LEU SER GLN VAL TYR GLU LEU LEU GLU LYS ASP TYR ARG SEQRES 19 A 277 MET GLU ARG PRO GLU GLY CYS PRO GLU LYS VAL TYR GLU SEQRES 20 A 277 LEU MET ARG ALA CYS TRP GLN TRP ASN PRO SER ASP ARG SEQRES 21 A 277 PRO SER PHE ALA GLU ILE HIS GLN ALA PHE GLU THR MET SEQRES 22 A 277 PHE GLN GLU SER SEQRES 1 B 277 GLY ALA MET GLY SER SER PRO ASN TYR ASP LYS TRP GLU SEQRES 2 B 277 MET GLU ARG THR ASP ILE THR MET LYS HIS LYS LEU GLY SEQRES 3 B 277 GLY GLY GLN TYR GLY GLU VAL TYR GLU GLY VAL TRP LYS SEQRES 4 B 277 LYS TYR SER LEU THR VAL ALA VAL LYS THR LEU LYS GLU SEQRES 5 B 277 ASP THR MET GLU VAL GLU GLU PHE LEU LYS GLU ALA ALA SEQRES 6 B 277 VAL MET LYS GLU ILE LYS HIS PRO ASN LEU VAL GLN LEU SEQRES 7 B 277 LEU GLY VAL CYS THR ARG GLU PRO PRO PHE TYR ILE ILE SEQRES 8 B 277 THR GLU PHE MET THR TYR GLY ASN LEU LEU ASP TYR LEU SEQRES 9 B 277 ARG GLU CYS ASN ARG GLN GLU VAL ASN ALA VAL VAL LEU SEQRES 10 B 277 LEU TYR MET ALA THR GLN ILE SER SER ALA MET GLU TYR SEQRES 11 B 277 LEU GLU LYS LYS ASN PHE ILE HIS ARG ASP LEU ALA ALA SEQRES 12 B 277 ARG ASN CYS LEU VAL GLY GLU ASN HIS LEU VAL LYS VAL SEQRES 13 B 277 ALA ASP PHE GLY LEU SER ARG LEU MET THR GLY ASP THR SEQRES 14 B 277 PTR THR ALA HIS ALA GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 15 B 277 THR ALA PRO GLU SER LEU ALA TYR ASN LYS PHE SER ILE SEQRES 16 B 277 LYS SER ASP VAL TRP ALA PHE GLY VAL LEU LEU TRP GLU SEQRES 17 B 277 ILE ALA THR TYR GLY MET SER PRO TYR PRO GLY ILE ASP SEQRES 18 B 277 LEU SER GLN VAL TYR GLU LEU LEU GLU LYS ASP TYR ARG SEQRES 19 B 277 MET GLU ARG PRO GLU GLY CYS PRO GLU LYS VAL TYR GLU SEQRES 20 B 277 LEU MET ARG ALA CYS TRP GLN TRP ASN PRO SER ASP ARG SEQRES 21 B 277 PRO SER PHE ALA GLU ILE HIS GLN ALA PHE GLU THR MET SEQRES 22 B 277 PHE GLN GLU SER MODRES 8H7H PTR A 393 TYR MODIFIED RESIDUE MODRES 8H7H PTR B 393 TYR MODIFIED RESIDUE HET PTR A 393 16 HET PTR B 393 16 HET QH9 A 601 34 HET QH9 B 601 34 HETNAM PTR O-PHOSPHOTYROSINE HETNAM QH9 5-[3-(6-METHOXYISOQUINOLIN-7-YL)-1H-PYRROLO[2,3- HETNAM 2 QH9 B]PYRIDIN-5-YL]-N-METHYL-N-PROP-2-YNYL-PYRIDINE-3- HETNAM 3 QH9 CARBOXAMIDE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 QH9 2(C27 H21 N5 O2) FORMUL 5 HOH *474(H2 O) HELIX 1 AA1 GLU A 238 THR A 240 5 3 HELIX 2 AA2 LYS A 263 SER A 265 5 3 HELIX 3 AA3 GLU A 279 LYS A 291 1 13 HELIX 4 AA4 ASN A 322 CYS A 330 1 9 HELIX 5 AA5 ASN A 336 LYS A 357 1 22 HELIX 6 AA6 ALA A 365 ARG A 367 5 3 HELIX 7 AA7 GLU A 373 HIS A 375 5 3 HELIX 8 AA8 PRO A 402 THR A 406 5 5 HELIX 9 AA9 ALA A 407 ASN A 414 1 8 HELIX 10 AB1 SER A 417 THR A 434 1 18 HELIX 11 AB2 ASP A 444 SER A 446 5 3 HELIX 12 AB3 GLN A 447 LYS A 454 1 8 HELIX 13 AB4 PRO A 465 TRP A 476 1 12 HELIX 14 AB5 ASN A 479 ARG A 483 5 5 HELIX 15 AB6 SER A 485 GLU A 499 1 15 HELIX 16 AB7 VAL B 280 LYS B 291 1 12 HELIX 17 AB8 ASN B 322 CYS B 330 1 9 HELIX 18 AB9 ASN B 336 LYS B 357 1 22 HELIX 19 AC1 ALA B 365 ARG B 367 5 3 HELIX 20 AC2 GLU B 373 HIS B 375 5 3 HELIX 21 AC3 PRO B 402 THR B 406 5 5 HELIX 22 AC4 ALA B 407 ASN B 414 1 8 HELIX 23 AC5 SER B 417 THR B 434 1 18 HELIX 24 AC6 ASP B 444 LYS B 454 1 11 HELIX 25 AC7 PRO B 465 TRP B 476 1 12 HELIX 26 AC8 ASN B 479 ARG B 483 5 5 HELIX 27 AC9 SER B 485 GLU B 499 1 15 SHEET 1 AA1 5 ILE A 242 LYS A 247 0 SHEET 2 AA1 5 VAL A 256 TRP A 261 -1 O GLU A 258 N HIS A 246 SHEET 3 AA1 5 LEU A 266 THR A 272 -1 O VAL A 268 N GLY A 259 SHEET 4 AA1 5 TYR A 312 GLU A 316 -1 O ILE A 313 N LYS A 271 SHEET 5 AA1 5 LEU A 301 CYS A 305 -1 N LEU A 302 O ILE A 314 SHEET 1 AA2 2 PHE A 359 ILE A 360 0 SHEET 2 AA2 2 SER A 385 ARG A 386 -1 O SER A 385 N ILE A 360 SHEET 1 AA3 2 CYS A 369 VAL A 371 0 SHEET 2 AA3 2 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370 SHEET 1 AA4 2 PTR A 393 THR A 394 0 SHEET 2 AA4 2 LYS A 415 PHE A 416 -1 O PHE A 416 N PTR A 393 SHEET 1 AA5 5 ILE B 242 LYS B 247 0 SHEET 2 AA5 5 VAL B 256 TRP B 261 -1 O GLU B 258 N HIS B 246 SHEET 3 AA5 5 THR B 267 LYS B 271 -1 O VAL B 268 N GLY B 259 SHEET 4 AA5 5 ILE B 313 GLU B 316 -1 O ILE B 313 N LYS B 271 SHEET 5 AA5 5 LEU B 301 GLY B 303 -1 N GLY B 303 O ILE B 314 SHEET 1 AA6 2 PHE B 359 ILE B 360 0 SHEET 2 AA6 2 SER B 385 ARG B 386 -1 O SER B 385 N ILE B 360 SHEET 1 AA7 2 CYS B 369 VAL B 371 0 SHEET 2 AA7 2 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370 SHEET 1 AA8 2 PTR B 393 THR B 394 0 SHEET 2 AA8 2 LYS B 415 PHE B 416 -1 O PHE B 416 N PTR B 393 LINK CE LYS A 271 N1 QH9 A 601 1555 1555 1.49 LINK C THR A 392 N PTR A 393 1555 1555 1.33 LINK C PTR A 393 N THR A 394 1555 1555 1.33 LINK CE LYS B 271 N1 QH9 B 601 1555 1555 1.50 LINK C THR B 392 N PTR B 393 1555 1555 1.33 LINK C PTR B 393 N THR B 394 1555 1555 1.33 CISPEP 1 GLY A 249 GLY A 250 0 -2.25 CISPEP 2 PRO A 309 PRO A 310 0 0.19 CRYST1 56.766 104.777 133.014 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007518 0.00000