HEADER ENDOCYTOSIS 20-OCT-22 8H7J TITLE THE CRYSTAL STRUCTURE OF CD163 SRCR5-9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCAVENGER RECEPTOR CYSTEINE-RICH TYPE 1 PROTEIN M130; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CD163, M130; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS CD163, ARTERIVIRUS RECEPTOR, SRCR, LONG-RANGE SRCR REPEAT, PUTATIVE KEYWDS 2 ARTERIVIRUS INTERACTION DOMAINS, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR Z.P.LUO,R.LI,H.F.MA REVDAT 3 04-MAR-26 8H7J 1 REMARK REVDAT 2 20-NOV-24 8H7J 1 REMARK REVDAT 1 25-OCT-23 8H7J 0 JRNL AUTH H.F.MA,R.LI,Z.P.LUO JRNL TITL THE CRYSTAL STRUCTURE OF CD163 SRCR5-9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 19455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.811 REMARK 3 FREE R VALUE TEST SET COUNT : 936 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06600 REMARK 3 B22 (A**2) : -0.41100 REMARK 3 B33 (A**2) : 0.29700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4415 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3670 ; 0.009 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6004 ; 1.437 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8612 ; 0.552 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 7.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ; 4.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 640 ;12.889 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5083 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 858 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 583 ; 0.146 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 62 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2148 ; 0.161 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2219 ; 9.908 ;11.961 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2219 ; 9.885 ;11.960 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2772 ;12.185 ;22.392 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2773 ;12.184 ;22.396 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2196 ;12.502 ;13.634 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2197 ;12.499 ;13.637 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3232 ;15.447 ;24.803 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3233 ;15.444 ;24.806 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8H7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300032986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20350 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.15M POTASSIUM SODIUM REMARK 280 TARTRATE TETRA-HYDRATE PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.66400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.04250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.66400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.04250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1031 REMARK 465 GLY A 1032 REMARK 465 HIS A 1033 REMARK 465 HIS A 1034 REMARK 465 HIS A 1035 REMARK 465 HIS A 1036 REMARK 465 HIS A 1037 REMARK 465 HIS A 1038 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 652 CG2 REMARK 470 SER A 669 OG REMARK 470 ILE A 742 CD1 REMARK 470 ILE A 765 CD1 REMARK 470 THR A 777 CG2 REMARK 470 ILE A 816 CD1 REMARK 470 ILE A 826 CD1 REMARK 470 ALA A 877 CB REMARK 470 LYS A 881 CB CG CD CE NZ REMARK 470 VAL A 883 CB CG1 CG2 REMARK 470 ILE A 922 CD1 REMARK 470 ILE A 943 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 586 31.13 70.34 REMARK 500 SER A 641 48.10 -97.05 REMARK 500 SER A 799 -158.85 -138.59 REMARK 500 ASN A 806 52.27 -94.91 REMARK 500 SER A 830 -148.56 59.47 REMARK 500 ARG A 831 -21.46 81.06 REMARK 500 ASP A 870 46.84 -82.89 REMARK 500 SER A 884 -58.01 -123.07 REMARK 500 GLU A 932 27.14 81.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 8H7J A 477 1028 UNP Q2VL90 C163A_PIG 477 1028 SEQADV 8H7J SER A -1 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J THR A 1029 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J ARG A 1030 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J THR A 1031 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J GLY A 1032 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1033 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1034 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1035 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1036 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1037 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1038 UNP Q2VL90 EXPRESSION TAG SEQRES 1 A 563 SER PRO ARG LEU VAL GLY GLY ASP ILE PRO CYS SER GLY SEQRES 2 A 563 ARG VAL GLU VAL GLN HIS GLY ASP THR TRP GLY THR VAL SEQRES 3 A 563 CYS ASP SER ASP PHE SER LEU GLU ALA ALA SER VAL LEU SEQRES 4 A 563 CYS ARG GLU LEU GLN CYS GLY THR VAL VAL SER LEU LEU SEQRES 5 A 563 GLY GLY ALA HIS PHE GLY GLU GLY SER GLY GLN ILE TRP SEQRES 6 A 563 ALA GLU GLU PHE GLN CYS GLU GLY HIS GLU SER HIS LEU SEQRES 7 A 563 SER LEU CYS PRO VAL ALA PRO ARG PRO ASP GLY THR CYS SEQRES 8 A 563 SER HIS SER ARG ASP VAL GLY VAL VAL CYS SER ARG TYR SEQRES 9 A 563 THR GLN ILE ARG LEU VAL ASN GLY LYS THR PRO CYS GLU SEQRES 10 A 563 GLY ARG VAL GLU LEU ASN ILE LEU GLY SER TRP GLY SER SEQRES 11 A 563 LEU CYS ASN SER HIS TRP ASP MET GLU ASP ALA HIS VAL SEQRES 12 A 563 LEU CYS GLN GLN LEU LYS CYS GLY VAL ALA LEU SER ILE SEQRES 13 A 563 PRO GLY GLY ALA PRO PHE GLY LYS GLY SER GLU GLN VAL SEQRES 14 A 563 TRP ARG HIS MET PHE HIS CYS THR GLY THR GLU LYS HIS SEQRES 15 A 563 MET GLY ASP CYS SER VAL THR ALA LEU GLY ALA SER LEU SEQRES 16 A 563 CYS SER SER GLY GLN VAL ALA SER VAL ILE CYS SER GLY SEQRES 17 A 563 ASN GLN SER GLN THR LEU SER PRO CYS ASN SER SER SER SEQRES 18 A 563 SER ASP PRO SER SER SER ILE ILE SER GLU GLU ASN GLY SEQRES 19 A 563 VAL ALA CYS ILE GLY SER GLY GLN LEU ARG LEU VAL ASP SEQRES 20 A 563 GLY GLY GLY ARG CYS ALA GLY ARG VAL GLU VAL TYR HIS SEQRES 21 A 563 GLU GLY SER TRP GLY THR ILE CYS ASP ASP SER TRP ASP SEQRES 22 A 563 LEU ASN ASP ALA HIS VAL VAL CYS LYS GLN LEU SER CYS SEQRES 23 A 563 GLY TRP ALA ILE ASN ALA THR GLY SER ALA HIS PHE GLY SEQRES 24 A 563 GLU GLY THR GLY PRO ILE TRP LEU ASP GLU ILE ASN CYS SEQRES 25 A 563 ASN GLY LYS GLU SER HIS ILE TRP GLN CYS HIS SER HIS SEQRES 26 A 563 GLY TRP GLY ARG HIS ASN CYS ARG HIS LYS GLU ASP ALA SEQRES 27 A 563 GLY VAL ILE CYS SER GLU PHE MET SER LEU ARG LEU ILE SEQRES 28 A 563 SER GLU ASN SER ARG GLU THR CYS ALA GLY ARG LEU GLU SEQRES 29 A 563 VAL PHE TYR ASN GLY ALA TRP GLY SER VAL GLY ARG ASN SEQRES 30 A 563 SER MET SER PRO ALA THR VAL GLY VAL VAL CYS ARG GLN SEQRES 31 A 563 LEU GLY CYS ALA ASP ARG GLY ASP ILE SER PRO ALA SER SEQRES 32 A 563 SER ASP LYS THR VAL SER ARG HIS MET TRP VAL ASP ASN SEQRES 33 A 563 VAL GLN CYS PRO LYS GLY PRO ASP THR LEU TRP GLN CYS SEQRES 34 A 563 PRO SER SER PRO TRP LYS LYS ARG LEU ALA SER PRO SER SEQRES 35 A 563 GLU GLU THR TRP ILE THR CYS ALA ASN LYS ILE ARG LEU SEQRES 36 A 563 GLN GLU GLY ASN THR ASN CYS SER GLY ARG VAL GLU ILE SEQRES 37 A 563 TRP TYR GLY GLY SER TRP GLY THR VAL CYS ASP ASP SER SEQRES 38 A 563 TRP ASP LEU GLU ASP ALA GLN VAL VAL CYS ARG GLN LEU SEQRES 39 A 563 GLY CYS GLY SER ALA LEU GLU ALA GLY LYS GLU ALA ALA SEQRES 40 A 563 PHE GLY GLN GLY THR GLY PRO ILE TRP LEU ASN GLU VAL SEQRES 41 A 563 LYS CYS LYS GLY ASN GLU THR SER LEU TRP ASP CYS PRO SEQRES 42 A 563 ALA ARG SER TRP GLY HIS SER ASP CYS GLY HIS LYS GLU SEQRES 43 A 563 ASP ALA ALA VAL THR CYS SER THR ARG THR GLY HIS HIS SEQRES 44 A 563 HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 12 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG A1101 14 HET NAG A1102 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 3 MAN 3(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 FORMUL 7 HOH *111(H2 O) HELIX 1 AA1 SER A 507 LEU A 518 1 12 HELIX 2 AA2 HIS A 552 CYS A 556 5 5 HELIX 3 AA3 SER A 567 ASP A 571 5 5 HELIX 4 AA4 ASN A 608 TRP A 611 5 4 HELIX 5 AA5 ASP A 612 LEU A 623 1 12 HELIX 6 AA6 HIS A 657 CYS A 661 5 5 HELIX 7 AA7 ASP A 748 LEU A 759 1 12 HELIX 8 AA8 HIS A 793 CYS A 797 5 5 HELIX 9 AA9 ARG A 808 ASP A 812 5 5 HELIX 10 AB1 SER A 855 LEU A 866 1 12 HELIX 11 AB2 THR A 900 CYS A 904 5 5 HELIX 12 AB3 ASP A 958 GLY A 970 1 13 HELIX 13 AB4 SER A 1003 CYS A 1007 5 5 HELIX 14 AB5 GLY A 1018 ASP A 1022 5 5 SHEET 1 AA1 4 ARG A 478 GLY A 481 0 SHEET 2 AA1 4 SER A 487 HIS A 494 -1 O ARG A 489 N VAL A 480 SHEET 3 AA1 4 GLY A 573 CYS A 576 -1 O VAL A 574 N GLY A 488 SHEET 4 AA1 4 VAL A 523 LEU A 527 -1 N VAL A 524 O VAL A 575 SHEET 1 AA2 4 ARG A 478 GLY A 481 0 SHEET 2 AA2 4 SER A 487 HIS A 494 -1 O ARG A 489 N VAL A 480 SHEET 3 AA2 4 THR A 497 VAL A 501 -1 O GLY A 499 N VAL A 492 SHEET 4 AA2 4 GLN A 538 TRP A 540 1 O TRP A 540 N THR A 500 SHEET 1 AA3 2 GLU A 542 PHE A 544 0 SHEET 2 AA3 2 VAL A 558 PRO A 560 -1 O ALA A 559 N GLU A 543 SHEET 1 AA4 4 ILE A 582 ASN A 586 0 SHEET 2 AA4 4 GLU A 592 ILE A 599 -1 O GLU A 596 N ARG A 583 SHEET 3 AA4 4 SER A 678 CYS A 681 -1 O VAL A 679 N GLY A 593 SHEET 4 AA4 4 ALA A 628 SER A 630 -1 N LEU A 629 O ILE A 680 SHEET 1 AA5 4 ILE A 582 ASN A 586 0 SHEET 2 AA5 4 GLU A 592 ILE A 599 -1 O GLU A 596 N ARG A 583 SHEET 3 AA5 4 SER A 602 LEU A 606 -1 O GLY A 604 N LEU A 597 SHEET 4 AA5 4 VAL A 644 TRP A 645 1 O TRP A 645 N SER A 605 SHEET 1 AA6 2 MET A 648 HIS A 650 0 SHEET 2 AA6 2 SER A 662 THR A 664 -1 O THR A 664 N MET A 648 SHEET 1 AA7 2 ILE A 704 GLU A 707 0 SHEET 2 AA7 2 VAL A 710 ILE A 713 -1 O VAL A 710 N GLU A 707 SHEET 1 AA8 4 LEU A 718 VAL A 721 0 SHEET 2 AA8 4 ALA A 728 HIS A 735 -1 O GLU A 732 N ARG A 719 SHEET 3 AA8 4 GLY A 814 CYS A 817 -1 O VAL A 815 N GLY A 729 SHEET 4 AA8 4 ALA A 764 THR A 768 -1 N ILE A 765 O ILE A 816 SHEET 1 AA9 4 LEU A 718 VAL A 721 0 SHEET 2 AA9 4 ALA A 728 HIS A 735 -1 O GLU A 732 N ARG A 719 SHEET 3 AA9 4 SER A 738 ILE A 742 -1 O GLY A 740 N VAL A 733 SHEET 4 AA9 4 ILE A 780 LEU A 782 1 O TRP A 781 N THR A 741 SHEET 1 AB1 4 SER A 822 ILE A 826 0 SHEET 2 AB1 4 ALA A 835 TYR A 842 -1 O GLU A 839 N ARG A 824 SHEET 3 AB1 4 TRP A 921 CYS A 924 -1 O ILE A 922 N GLY A 836 SHEET 4 AB1 4 GLY A 872 ILE A 874 -1 N ASP A 873 O THR A 923 SHEET 1 AB2 5 SER A 822 ILE A 826 0 SHEET 2 AB2 5 ALA A 835 TYR A 842 -1 O GLU A 839 N ARG A 824 SHEET 3 AB2 5 ALA A 845 VAL A 849 -1 O GLY A 847 N VAL A 840 SHEET 4 AB2 5 ARG A 885 VAL A 889 1 O HIS A 886 N SER A 848 SHEET 5 AB2 5 ARG A 912 ALA A 914 -1 O ARG A 912 N MET A 887 SHEET 1 AB3 4 ILE A 928 GLU A 932 0 SHEET 2 AB3 4 SER A 938 TYR A 945 -1 O ARG A 940 N GLN A 931 SHEET 3 AB3 4 ALA A1024 CYS A1027 -1 O VAL A1025 N GLY A 939 SHEET 4 AB3 4 ALA A 974 GLY A 978 -1 N LEU A 975 O THR A1026 SHEET 1 AB4 4 ILE A 928 GLU A 932 0 SHEET 2 AB4 4 SER A 938 TYR A 945 -1 O ARG A 940 N GLN A 931 SHEET 3 AB4 4 SER A 948 VAL A 952 -1 O GLY A 950 N ILE A 943 SHEET 4 AB4 4 ILE A 990 LEU A 992 1 O TRP A 991 N THR A 951 SSBOND 1 CYS A 486 CYS A 520 1555 1555 2.15 SSBOND 2 CYS A 502 CYS A 566 1555 1555 2.07 SSBOND 3 CYS A 515 CYS A 576 1555 1555 2.07 SSBOND 4 CYS A 546 CYS A 556 1555 1555 2.10 SSBOND 5 CYS A 591 CYS A 625 1555 1555 2.08 SSBOND 6 CYS A 607 CYS A 671 1555 1555 2.35 SSBOND 7 CYS A 620 CYS A 681 1555 1555 2.05 SSBOND 8 CYS A 651 CYS A 661 1555 1555 2.12 SSBOND 9 CYS A 692 CYS A 712 1555 1555 2.10 SSBOND 10 CYS A 727 CYS A 761 1555 1555 2.10 SSBOND 11 CYS A 743 CYS A 807 1555 1555 2.09 SSBOND 12 CYS A 756 CYS A 817 1555 1555 2.05 SSBOND 13 CYS A 787 CYS A 797 1555 1555 2.03 SSBOND 14 CYS A 834 CYS A 868 1555 1555 2.09 SSBOND 15 CYS A 863 CYS A 924 1555 1555 2.09 SSBOND 16 CYS A 894 CYS A 904 1555 1555 2.03 SSBOND 17 CYS A 937 CYS A 971 1555 1555 2.07 SSBOND 18 CYS A 953 CYS A 1017 1555 1555 2.06 SSBOND 19 CYS A 966 CYS A 1027 1555 1555 2.02 SSBOND 20 CYS A 997 CYS A 1007 1555 1555 2.07 LINK ND2 ASN A 684 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 693 C1 NAG A1102 1555 1555 1.46 LINK ND2 ASN A 766 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 936 C1 NAG A1101 1555 1555 1.47 LINK ND2 ASN A1000 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 6 1555 1555 1.44 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.46 LINK O3 MAN C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 MAN C 3 C1 MAN C 5 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CRYST1 127.328 60.085 85.424 90.00 114.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007854 0.000000 0.003516 0.00000 SCALE2 0.000000 0.016643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012826 0.00000 CONECT 76 332 CONECT 196 665 CONECT 289 737 CONECT 332 76 CONECT 520 596 CONECT 596 520 CONECT 665 196 CONECT 737 289 CONECT 857 1125 CONECT 977 1451 CONECT 1084 1515 CONECT 1125 857 CONECT 1319 1390 CONECT 1390 1319 CONECT 1451 977 CONECT 1515 1084 CONECT 1533 4160 CONECT 1591 1726 CONECT 1599 4274 CONECT 1726 1591 CONECT 1828 2091 CONECT 1950 2446 CONECT 2053 2522 CONECT 2091 1828 CONECT 2129 4232 CONECT 2280 2363 CONECT 2363 2280 CONECT 2446 1950 CONECT 2522 2053 CONECT 2658 2904 CONECT 2866 3333 CONECT 2904 2658 CONECT 3094 3173 CONECT 3173 3094 CONECT 3333 2866 CONECT 3427 4260 CONECT 3433 3696 CONECT 3555 4036 CONECT 3658 4106 CONECT 3696 3433 CONECT 3880 3959 CONECT 3901 4132 CONECT 3959 3880 CONECT 4036 3555 CONECT 4106 3658 CONECT 4132 3901 4133 4143 CONECT 4133 4132 4134 4140 CONECT 4134 4133 4135 4141 CONECT 4135 4134 4136 4142 CONECT 4136 4135 4137 4143 CONECT 4137 4136 4144 CONECT 4138 4139 4140 4145 CONECT 4139 4138 CONECT 4140 4133 4138 CONECT 4141 4134 CONECT 4142 4135 4146 CONECT 4143 4132 4136 CONECT 4144 4137 CONECT 4145 4138 CONECT 4146 4142 4147 4157 CONECT 4147 4146 4148 4154 CONECT 4148 4147 4149 4155 CONECT 4149 4148 4150 4156 CONECT 4150 4149 4151 4157 CONECT 4151 4150 4158 CONECT 4152 4153 4154 4159 CONECT 4153 4152 CONECT 4154 4147 4152 CONECT 4155 4148 CONECT 4156 4149 CONECT 4157 4146 4150 CONECT 4158 4151 CONECT 4159 4152 CONECT 4160 1533 4161 4171 CONECT 4161 4160 4162 4168 CONECT 4162 4161 4163 4169 CONECT 4163 4162 4164 4170 CONECT 4164 4163 4165 4171 CONECT 4165 4164 4172 CONECT 4166 4167 4168 4173 CONECT 4167 4166 CONECT 4168 4161 4166 CONECT 4169 4162 CONECT 4170 4163 4174 CONECT 4171 4160 4164 CONECT 4172 4165 4222 CONECT 4173 4166 CONECT 4174 4170 4175 4185 CONECT 4175 4174 4176 4182 CONECT 4176 4175 4177 4183 CONECT 4177 4176 4178 4184 CONECT 4178 4177 4179 4185 CONECT 4179 4178 4186 CONECT 4180 4181 4182 4187 CONECT 4181 4180 CONECT 4182 4175 4180 CONECT 4183 4176 CONECT 4184 4177 4188 CONECT 4185 4174 4178 CONECT 4186 4179 CONECT 4187 4180 CONECT 4188 4184 4189 4194 4198 CONECT 4189 4188 4190 4195 CONECT 4190 4189 4191 4196 CONECT 4191 4190 4192 4197 CONECT 4192 4191 4193 4198 CONECT 4193 4192 4199 CONECT 4194 4188 CONECT 4195 4189 CONECT 4196 4190 4200 CONECT 4197 4191 CONECT 4198 4188 4192 CONECT 4199 4193 4211 CONECT 4200 4196 4201 4209 CONECT 4201 4200 4202 4206 CONECT 4202 4201 4203 4207 CONECT 4203 4202 4204 4208 CONECT 4204 4203 4205 4209 CONECT 4205 4204 4210 CONECT 4206 4201 CONECT 4207 4202 CONECT 4208 4203 CONECT 4209 4200 4204 CONECT 4210 4205 CONECT 4211 4199 4212 4220 CONECT 4212 4211 4213 4217 CONECT 4213 4212 4214 4218 CONECT 4214 4213 4215 4219 CONECT 4215 4214 4216 4220 CONECT 4216 4215 4221 CONECT 4217 4212 CONECT 4218 4213 CONECT 4219 4214 CONECT 4220 4211 4215 CONECT 4221 4216 CONECT 4222 4172 4223 4231 CONECT 4223 4222 4224 4228 CONECT 4224 4223 4225 4229 CONECT 4225 4224 4226 4230 CONECT 4226 4225 4227 4231 CONECT 4227 4226 CONECT 4228 4223 CONECT 4229 4224 CONECT 4230 4225 CONECT 4231 4222 4226 CONECT 4232 2129 4233 4243 CONECT 4233 4232 4234 4240 CONECT 4234 4233 4235 4241 CONECT 4235 4234 4236 4242 CONECT 4236 4235 4237 4243 CONECT 4237 4236 4244 CONECT 4238 4239 4240 4245 CONECT 4239 4238 CONECT 4240 4233 4238 CONECT 4241 4234 CONECT 4242 4235 4246 CONECT 4243 4232 4236 CONECT 4244 4237 CONECT 4245 4238 CONECT 4246 4242 4247 4257 CONECT 4247 4246 4248 4254 CONECT 4248 4247 4249 4255 CONECT 4249 4248 4250 4256 CONECT 4250 4249 4251 4257 CONECT 4251 4250 4258 CONECT 4252 4253 4254 4259 CONECT 4253 4252 CONECT 4254 4247 4252 CONECT 4255 4248 CONECT 4256 4249 CONECT 4257 4246 4250 CONECT 4258 4251 CONECT 4259 4252 CONECT 4260 3427 4261 4271 CONECT 4261 4260 4262 4268 CONECT 4262 4261 4263 4269 CONECT 4263 4262 4264 4270 CONECT 4264 4263 4265 4271 CONECT 4265 4264 4272 CONECT 4266 4267 4268 4273 CONECT 4267 4266 CONECT 4268 4261 4266 CONECT 4269 4262 CONECT 4270 4263 CONECT 4271 4260 4264 CONECT 4272 4265 CONECT 4273 4266 CONECT 4274 1599 4275 4285 CONECT 4275 4274 4276 4282 CONECT 4276 4275 4277 4283 CONECT 4277 4276 4278 4284 CONECT 4278 4277 4279 4285 CONECT 4279 4278 4286 CONECT 4280 4281 4282 4287 CONECT 4281 4280 CONECT 4282 4275 4280 CONECT 4283 4276 CONECT 4284 4277 CONECT 4285 4274 4278 CONECT 4286 4279 CONECT 4287 4280 MASTER 294 0 12 14 47 0 0 6 4397 1 201 44 END