HEADER ENDOCYTOSIS 20-OCT-22 8H7J TITLE THE CRYSTAL STRUCTURE OF CD163 SRCR5-9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCAVENGER RECEPTOR CYSTEINE-RICH TYPE 1 PROTEIN M130; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CD163, M130; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS CD163, ARTERIVIRUS RECEPTOR, SRCR, LONG-RANGE SRCR REPEAT, PUTATIVE KEYWDS 2 ARTERIVIRUS INTERACTION DOMAINS, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR Z.P.LUO,R.LI,H.F.MA REVDAT 1 25-OCT-23 8H7J 0 JRNL AUTH H.F.MA,R.LI,Z.P.LUO JRNL TITL THE CRYSTAL STRUCTURE OF CD163 SRCR5-9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 19455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.811 REMARK 3 FREE R VALUE TEST SET COUNT : 936 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06600 REMARK 3 B22 (A**2) : -0.41100 REMARK 3 B33 (A**2) : 0.29700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4415 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3670 ; 0.009 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6004 ; 1.437 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8612 ; 0.552 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 7.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ; 4.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 640 ;12.889 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5083 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 858 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 583 ; 0.146 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 62 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2148 ; 0.161 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2219 ; 9.908 ;11.961 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2219 ; 9.885 ;11.960 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2772 ;12.185 ;22.392 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2773 ;12.184 ;22.396 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2196 ;12.502 ;13.634 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2197 ;12.499 ;13.637 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3232 ;15.447 ;24.803 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3233 ;15.444 ;24.806 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8H7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300032986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20350 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.15M POTASSIUM SODIUM REMARK 280 TARTRATE TETRA-HYDRATE PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.66400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.04250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.66400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.04250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1031 REMARK 465 GLY A 1032 REMARK 465 HIS A 1033 REMARK 465 HIS A 1034 REMARK 465 HIS A 1035 REMARK 465 HIS A 1036 REMARK 465 HIS A 1037 REMARK 465 HIS A 1038 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 652 CG2 REMARK 470 SER A 669 OG REMARK 470 ILE A 742 CD1 REMARK 470 ILE A 765 CD1 REMARK 470 THR A 777 CG2 REMARK 470 ILE A 816 CD1 REMARK 470 ILE A 826 CD1 REMARK 470 ALA A 877 CB REMARK 470 LYS A 881 CB CG CD CE NZ REMARK 470 VAL A 883 CB CG1 CG2 REMARK 470 ILE A 922 CD1 REMARK 470 ILE A 943 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 586 31.13 70.34 REMARK 500 SER A 641 48.10 -97.05 REMARK 500 SER A 799 -158.85 -138.59 REMARK 500 ASN A 806 52.27 -94.91 REMARK 500 SER A 830 -148.56 59.47 REMARK 500 ARG A 831 -21.46 81.06 REMARK 500 ASP A 870 46.84 -82.89 REMARK 500 SER A 884 -58.01 -123.07 REMARK 500 GLU A 932 27.14 81.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 8H7J A 477 1028 UNP Q2VL90 C163A_PIG 477 1028 SEQADV 8H7J SER A -1 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J THR A 1029 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J ARG A 1030 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J THR A 1031 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J GLY A 1032 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1033 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1034 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1035 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1036 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1037 UNP Q2VL90 EXPRESSION TAG SEQADV 8H7J HIS A 1038 UNP Q2VL90 EXPRESSION TAG SEQRES 1 A 563 SER PRO ARG LEU VAL GLY GLY ASP ILE PRO CYS SER GLY SEQRES 2 A 563 ARG VAL GLU VAL GLN HIS GLY ASP THR TRP GLY THR VAL SEQRES 3 A 563 CYS ASP SER ASP PHE SER LEU GLU ALA ALA SER VAL LEU SEQRES 4 A 563 CYS ARG GLU LEU GLN CYS GLY THR VAL VAL SER LEU LEU SEQRES 5 A 563 GLY GLY ALA HIS PHE GLY GLU GLY SER GLY GLN ILE TRP SEQRES 6 A 563 ALA GLU GLU PHE GLN CYS GLU GLY HIS GLU SER HIS LEU SEQRES 7 A 563 SER LEU CYS PRO VAL ALA PRO ARG PRO ASP GLY THR CYS SEQRES 8 A 563 SER HIS SER ARG ASP VAL GLY VAL VAL CYS SER ARG TYR SEQRES 9 A 563 THR GLN ILE ARG LEU VAL ASN GLY LYS THR PRO CYS GLU SEQRES 10 A 563 GLY ARG VAL GLU LEU ASN ILE LEU GLY SER TRP GLY SER SEQRES 11 A 563 LEU CYS ASN SER HIS TRP ASP MET GLU ASP ALA HIS VAL SEQRES 12 A 563 LEU CYS GLN GLN LEU LYS CYS GLY VAL ALA LEU SER ILE SEQRES 13 A 563 PRO GLY GLY ALA PRO PHE GLY LYS GLY SER GLU GLN VAL SEQRES 14 A 563 TRP ARG HIS MET PHE HIS CYS THR GLY THR GLU LYS HIS SEQRES 15 A 563 MET GLY ASP CYS SER VAL THR ALA LEU GLY ALA SER LEU SEQRES 16 A 563 CYS SER SER GLY GLN VAL ALA SER VAL ILE CYS SER GLY SEQRES 17 A 563 ASN GLN SER GLN THR LEU SER PRO CYS ASN SER SER SER SEQRES 18 A 563 SER ASP PRO SER SER SER ILE ILE SER GLU GLU ASN GLY SEQRES 19 A 563 VAL ALA CYS ILE GLY SER GLY GLN LEU ARG LEU VAL ASP SEQRES 20 A 563 GLY GLY GLY ARG CYS ALA GLY ARG VAL GLU VAL TYR HIS SEQRES 21 A 563 GLU GLY SER TRP GLY THR ILE CYS ASP ASP SER TRP ASP SEQRES 22 A 563 LEU ASN ASP ALA HIS VAL VAL CYS LYS GLN LEU SER CYS SEQRES 23 A 563 GLY TRP ALA ILE ASN ALA THR GLY SER ALA HIS PHE GLY SEQRES 24 A 563 GLU GLY THR GLY PRO ILE TRP LEU ASP GLU ILE ASN CYS SEQRES 25 A 563 ASN GLY LYS GLU SER HIS ILE TRP GLN CYS HIS SER HIS SEQRES 26 A 563 GLY TRP GLY ARG HIS ASN CYS ARG HIS LYS GLU ASP ALA SEQRES 27 A 563 GLY VAL ILE CYS SER GLU PHE MET SER LEU ARG LEU ILE SEQRES 28 A 563 SER GLU ASN SER ARG GLU THR CYS ALA GLY ARG LEU GLU SEQRES 29 A 563 VAL PHE TYR ASN GLY ALA TRP GLY SER VAL GLY ARG ASN SEQRES 30 A 563 SER MET SER PRO ALA THR VAL GLY VAL VAL CYS ARG GLN SEQRES 31 A 563 LEU GLY CYS ALA ASP ARG GLY ASP ILE SER PRO ALA SER SEQRES 32 A 563 SER ASP LYS THR VAL SER ARG HIS MET TRP VAL ASP ASN SEQRES 33 A 563 VAL GLN CYS PRO LYS GLY PRO ASP THR LEU TRP GLN CYS SEQRES 34 A 563 PRO SER SER PRO TRP LYS LYS ARG LEU ALA SER PRO SER SEQRES 35 A 563 GLU GLU THR TRP ILE THR CYS ALA ASN LYS ILE ARG LEU SEQRES 36 A 563 GLN GLU GLY ASN THR ASN CYS SER GLY ARG VAL GLU ILE SEQRES 37 A 563 TRP TYR GLY GLY SER TRP GLY THR VAL CYS ASP ASP SER SEQRES 38 A 563 TRP ASP LEU GLU ASP ALA GLN VAL VAL CYS ARG GLN LEU SEQRES 39 A 563 GLY CYS GLY SER ALA LEU GLU ALA GLY LYS GLU ALA ALA SEQRES 40 A 563 PHE GLY GLN GLY THR GLY PRO ILE TRP LEU ASN GLU VAL SEQRES 41 A 563 LYS CYS LYS GLY ASN GLU THR SER LEU TRP ASP CYS PRO SEQRES 42 A 563 ALA ARG SER TRP GLY HIS SER ASP CYS GLY HIS LYS GLU SEQRES 43 A 563 ASP ALA ALA VAL THR CYS SER THR ARG THR GLY HIS HIS SEQRES 44 A 563 HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 12 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG A1101 14 HET NAG A1102 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 3 MAN 3(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 FORMUL 7 HOH *111(H2 O) HELIX 1 AA1 SER A 507 LEU A 518 1 12 HELIX 2 AA2 HIS A 552 CYS A 556 5 5 HELIX 3 AA3 SER A 567 ASP A 571 5 5 HELIX 4 AA4 ASN A 608 TRP A 611 5 4 HELIX 5 AA5 ASP A 612 LEU A 623 1 12 HELIX 6 AA6 HIS A 657 CYS A 661 5 5 HELIX 7 AA7 ASP A 748 LEU A 759 1 12 HELIX 8 AA8 HIS A 793 CYS A 797 5 5 HELIX 9 AA9 ARG A 808 ASP A 812 5 5 HELIX 10 AB1 SER A 855 LEU A 866 1 12 HELIX 11 AB2 THR A 900 CYS A 904 5 5 HELIX 12 AB3 ASP A 958 GLY A 970 1 13 HELIX 13 AB4 SER A 1003 CYS A 1007 5 5 HELIX 14 AB5 GLY A 1018 ASP A 1022 5 5 SHEET 1 AA1 4 ARG A 478 GLY A 481 0 SHEET 2 AA1 4 SER A 487 HIS A 494 -1 O ARG A 489 N VAL A 480 SHEET 3 AA1 4 GLY A 573 CYS A 576 -1 O VAL A 574 N GLY A 488 SHEET 4 AA1 4 VAL A 523 LEU A 527 -1 N VAL A 524 O VAL A 575 SHEET 1 AA2 4 ARG A 478 GLY A 481 0 SHEET 2 AA2 4 SER A 487 HIS A 494 -1 O ARG A 489 N VAL A 480 SHEET 3 AA2 4 THR A 497 VAL A 501 -1 O GLY A 499 N VAL A 492 SHEET 4 AA2 4 GLN A 538 TRP A 540 1 O TRP A 540 N THR A 500 SHEET 1 AA3 2 GLU A 542 PHE A 544 0 SHEET 2 AA3 2 VAL A 558 PRO A 560 -1 O ALA A 559 N GLU A 543 SHEET 1 AA4 4 ILE A 582 ASN A 586 0 SHEET 2 AA4 4 GLU A 592 ILE A 599 -1 O GLU A 596 N ARG A 583 SHEET 3 AA4 4 SER A 678 CYS A 681 -1 O VAL A 679 N GLY A 593 SHEET 4 AA4 4 ALA A 628 SER A 630 -1 N LEU A 629 O ILE A 680 SHEET 1 AA5 4 ILE A 582 ASN A 586 0 SHEET 2 AA5 4 GLU A 592 ILE A 599 -1 O GLU A 596 N ARG A 583 SHEET 3 AA5 4 SER A 602 LEU A 606 -1 O GLY A 604 N LEU A 597 SHEET 4 AA5 4 VAL A 644 TRP A 645 1 O TRP A 645 N SER A 605 SHEET 1 AA6 2 MET A 648 HIS A 650 0 SHEET 2 AA6 2 SER A 662 THR A 664 -1 O THR A 664 N MET A 648 SHEET 1 AA7 2 ILE A 704 GLU A 707 0 SHEET 2 AA7 2 VAL A 710 ILE A 713 -1 O VAL A 710 N GLU A 707 SHEET 1 AA8 4 LEU A 718 VAL A 721 0 SHEET 2 AA8 4 ALA A 728 HIS A 735 -1 O GLU A 732 N ARG A 719 SHEET 3 AA8 4 GLY A 814 CYS A 817 -1 O VAL A 815 N GLY A 729 SHEET 4 AA8 4 ALA A 764 THR A 768 -1 N ILE A 765 O ILE A 816 SHEET 1 AA9 4 LEU A 718 VAL A 721 0 SHEET 2 AA9 4 ALA A 728 HIS A 735 -1 O GLU A 732 N ARG A 719 SHEET 3 AA9 4 SER A 738 ILE A 742 -1 O GLY A 740 N VAL A 733 SHEET 4 AA9 4 ILE A 780 LEU A 782 1 O TRP A 781 N THR A 741 SHEET 1 AB1 4 SER A 822 ILE A 826 0 SHEET 2 AB1 4 ALA A 835 TYR A 842 -1 O GLU A 839 N ARG A 824 SHEET 3 AB1 4 TRP A 921 CYS A 924 -1 O ILE A 922 N GLY A 836 SHEET 4 AB1 4 GLY A 872 ILE A 874 -1 N ASP A 873 O THR A 923 SHEET 1 AB2 5 SER A 822 ILE A 826 0 SHEET 2 AB2 5 ALA A 835 TYR A 842 -1 O GLU A 839 N ARG A 824 SHEET 3 AB2 5 ALA A 845 VAL A 849 -1 O GLY A 847 N VAL A 840 SHEET 4 AB2 5 ARG A 885 VAL A 889 1 O HIS A 886 N SER A 848 SHEET 5 AB2 5 ARG A 912 ALA A 914 -1 O ARG A 912 N MET A 887 SHEET 1 AB3 4 ILE A 928 GLU A 932 0 SHEET 2 AB3 4 SER A 938 TYR A 945 -1 O ARG A 940 N GLN A 931 SHEET 3 AB3 4 ALA A1024 CYS A1027 -1 O VAL A1025 N GLY A 939 SHEET 4 AB3 4 ALA A 974 GLY A 978 -1 N LEU A 975 O THR A1026 SHEET 1 AB4 4 ILE A 928 GLU A 932 0 SHEET 2 AB4 4 SER A 938 TYR A 945 -1 O ARG A 940 N GLN A 931 SHEET 3 AB4 4 SER A 948 VAL A 952 -1 O GLY A 950 N ILE A 943 SHEET 4 AB4 4 ILE A 990 LEU A 992 1 O TRP A 991 N THR A 951 SSBOND 1 CYS A 486 CYS A 520 1555 1555 2.15 SSBOND 2 CYS A 502 CYS A 566 1555 1555 2.07 SSBOND 3 CYS A 515 CYS A 576 1555 1555 2.07 SSBOND 4 CYS A 546 CYS A 556 1555 1555 2.10 SSBOND 5 CYS A 591 CYS A 625 1555 1555 2.08 SSBOND 6 CYS A 607 CYS A 671 1555 1555 2.35 SSBOND 7 CYS A 620 CYS A 681 1555 1555 2.05 SSBOND 8 CYS A 651 CYS A 661 1555 1555 2.12 SSBOND 9 CYS A 692 CYS A 712 1555 1555 2.10 SSBOND 10 CYS A 727 CYS A 761 1555 1555 2.10 SSBOND 11 CYS A 743 CYS A 807 1555 1555 2.09 SSBOND 12 CYS A 756 CYS A 817 1555 1555 2.05 SSBOND 13 CYS A 787 CYS A 797 1555 1555 2.03 SSBOND 14 CYS A 834 CYS A 868 1555 1555 2.09 SSBOND 15 CYS A 863 CYS A 924 1555 1555 2.09 SSBOND 16 CYS A 894 CYS A 904 1555 1555 2.03 SSBOND 17 CYS A 937 CYS A 971 1555 1555 2.07 SSBOND 18 CYS A 953 CYS A 1017 1555 1555 2.06 SSBOND 19 CYS A 966 CYS A 1027 1555 1555 2.02 SSBOND 20 CYS A 997 CYS A 1007 1555 1555 2.07 LINK ND2 ASN A 684 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 693 C1 NAG A1102 1555 1555 1.46 LINK ND2 ASN A 766 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 936 C1 NAG A1101 1555 1555 1.47 LINK ND2 ASN A1000 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 6 1555 1555 1.44 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.46 LINK O3 MAN C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 MAN C 3 C1 MAN C 5 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CRYST1 127.328 60.085 85.424 90.00 114.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007854 0.000000 0.003516 0.00000 SCALE2 0.000000 0.016643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012826 0.00000