HEADER SIGNALING PROTEIN 21-OCT-22 8H7X TITLE CRYSTAL STRUCTURE OF EGFR T790M/C797S MUTANT IN COMPLEX WITH TITLE 2 BRIGATINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN KINASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KUKIMOTO-NIINO,M.SHIROUZU REVDAT 2 06-MAR-24 8H7X 1 JRNL REVDAT 1 25-OCT-23 8H7X 0 JRNL AUTH M.SUZUKI,K.UCHIBORI,T.OH-HARA,Y.NOMURA,R.SUZUKI,A.TAKEMOTO, JRNL AUTH 2 M.ARAKI,S.MATSUMOTO,Y.SAGAE,M.KUKIMOTO-NIINO,Y.KAWASE, JRNL AUTH 3 M.SHIROUZU,Y.OKUNO,M.NISHIO,N.FUJITA,R.KATAYAMA JRNL TITL A MACROCYCLIC KINASE INHIBITOR OVERCOMES TRIPLE RESISTANT JRNL TITL 2 MUTATIONS IN EGFR-POSITIVE LUNG CANCER. JRNL REF NPJ PRECIS ONCOL V. 8 46 2024 JRNL REFN ISSN 2397-768X JRNL PMID 38396251 JRNL DOI 10.1038/S41698-024-00542-9 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 6.8023 1.00 1321 146 0.1646 0.2295 REMARK 3 2 6.8023 - 5.4016 1.00 1230 137 0.1786 0.2599 REMARK 3 3 5.4016 - 4.7195 1.00 1213 134 0.1477 0.2151 REMARK 3 4 4.7195 - 4.2883 1.00 1198 134 0.1357 0.2116 REMARK 3 5 4.2883 - 3.9811 1.00 1206 134 0.1876 0.2549 REMARK 3 6 3.9811 - 3.7464 0.99 1187 133 0.2125 0.3001 REMARK 3 7 3.7464 - 3.5589 1.00 1176 130 0.2498 0.3684 REMARK 3 8 3.5589 - 3.4040 1.00 1201 134 0.3050 0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 697 THROUGH 768 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2031 21.3461 186.1677 REMARK 3 T TENSOR REMARK 3 T11: 0.8542 T22: 0.8224 REMARK 3 T33: 0.7574 T12: -0.0346 REMARK 3 T13: -0.1179 T23: 0.1016 REMARK 3 L TENSOR REMARK 3 L11: 1.2228 L22: 4.7671 REMARK 3 L33: 3.3146 L12: 2.0896 REMARK 3 L13: 0.1306 L23: 0.4576 REMARK 3 S TENSOR REMARK 3 S11: -0.1619 S12: 0.0663 S13: 0.1778 REMARK 3 S21: -0.1710 S22: 0.0963 S23: 0.0825 REMARK 3 S31: -0.1188 S32: 0.1628 S33: -0.0295 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 769 THROUGH 1019 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4346 14.2584 206.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.5863 T22: 0.6143 REMARK 3 T33: 0.6997 T12: 0.0898 REMARK 3 T13: 0.0965 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 3.4405 L22: 2.0958 REMARK 3 L33: 5.6223 L12: 0.0127 REMARK 3 L13: 2.1825 L23: -0.7837 REMARK 3 S TENSOR REMARK 3 S11: -0.3084 S12: -0.0383 S13: 0.0411 REMARK 3 S21: -0.0753 S22: 0.1662 S23: -0.0649 REMARK 3 S31: -0.1410 S32: 0.0204 S33: 0.1506 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 697 THROUGH 732 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3533 -3.1537 144.0223 REMARK 3 T TENSOR REMARK 3 T11: 0.8533 T22: 0.9325 REMARK 3 T33: 0.9313 T12: 0.2502 REMARK 3 T13: 0.1098 T23: 0.0875 REMARK 3 L TENSOR REMARK 3 L11: 6.6235 L22: 4.8509 REMARK 3 L33: 3.9964 L12: -2.7862 REMARK 3 L13: -2.0129 L23: 1.2949 REMARK 3 S TENSOR REMARK 3 S11: 0.7836 S12: 1.3948 S13: 0.3524 REMARK 3 S21: -0.4345 S22: -1.1394 S23: 0.3959 REMARK 3 S31: -0.1680 S32: -0.2369 S33: 0.1781 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 733 THROUGH 752 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6915 -2.3166 142.1318 REMARK 3 T TENSOR REMARK 3 T11: 1.0530 T22: 0.8861 REMARK 3 T33: 0.9082 T12: -0.0311 REMARK 3 T13: -0.1666 T23: 0.0809 REMARK 3 L TENSOR REMARK 3 L11: 2.8719 L22: 4.0214 REMARK 3 L33: 4.8752 L12: -2.7739 REMARK 3 L13: -0.9760 L23: 2.8707 REMARK 3 S TENSOR REMARK 3 S11: 0.6443 S12: 1.3656 S13: 0.2619 REMARK 3 S21: -0.3899 S22: -0.0906 S23: 1.0871 REMARK 3 S31: 0.6645 S32: -0.7589 S33: -0.5232 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 753 THROUGH 853 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5674 -2.1631 157.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.6225 T22: 0.5170 REMARK 3 T33: 0.7713 T12: -0.0879 REMARK 3 T13: 0.0097 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 0.9804 L22: 3.8832 REMARK 3 L33: 6.9520 L12: -0.2416 REMARK 3 L13: -0.0465 L23: 2.1412 REMARK 3 S TENSOR REMARK 3 S11: 0.1192 S12: 0.0168 S13: -0.0696 REMARK 3 S21: 0.2902 S22: -0.2520 S23: 0.3994 REMARK 3 S31: 0.6862 S32: -0.1762 S33: 0.2272 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 854 THROUGH 882 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3679 8.5484 156.4746 REMARK 3 T TENSOR REMARK 3 T11: 0.9247 T22: 0.8144 REMARK 3 T33: 0.6991 T12: 0.1438 REMARK 3 T13: 0.1451 T23: 0.1685 REMARK 3 L TENSOR REMARK 3 L11: 2.2113 L22: 1.5134 REMARK 3 L33: 3.2616 L12: -1.7551 REMARK 3 L13: -2.6891 L23: 2.1328 REMARK 3 S TENSOR REMARK 3 S11: 1.0799 S12: 0.1744 S13: 0.2041 REMARK 3 S21: -0.8818 S22: -0.5563 S23: 0.0310 REMARK 3 S31: -0.6933 S32: 0.8122 S33: -0.4317 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 883 THROUGH 1018 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8446 6.0841 170.3938 REMARK 3 T TENSOR REMARK 3 T11: 0.5081 T22: 0.5113 REMARK 3 T33: 0.7541 T12: -0.0969 REMARK 3 T13: -0.0095 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 2.1282 L22: 2.9604 REMARK 3 L33: 6.6448 L12: -0.0158 REMARK 3 L13: 0.3522 L23: 0.4648 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: -0.2159 S13: 0.2629 REMARK 3 S21: 0.1476 S22: -0.1243 S23: -0.0480 REMARK 3 S31: -0.2029 S32: 0.1239 S33: -0.0513 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8H7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10814 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5XGN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM TARTRATE DIBASIC REMARK 280 DIHYDRATE, 22% PEG 3350, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.65500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.65500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 693 REMARK 465 ALA A 694 REMARK 465 MET A 695 REMARK 465 GLY A 696 REMARK 465 HIS A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 MET A 1007 REMARK 465 ASP A 1008 REMARK 465 ASP A 1009 REMARK 465 VAL A 1010 REMARK 465 VAL A 1011 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 465 GLY B 693 REMARK 465 ALA B 694 REMARK 465 MET B 695 REMARK 465 GLY B 696 REMARK 465 GLY B 863 REMARK 465 ALA B 864 REMARK 465 GLU B 865 REMARK 465 GLU B 872 REMARK 465 GLY B 873 REMARK 465 GLY B 874 REMARK 465 LYS B 875 REMARK 465 MET B 987 REMARK 465 HIS B 988 REMARK 465 LEU B 989 REMARK 465 PRO B 990 REMARK 465 ASP B 1003 REMARK 465 GLU B 1004 REMARK 465 GLU B 1005 REMARK 465 ASP B 1006 REMARK 465 MET B 1007 REMARK 465 ASP B 1008 REMARK 465 ASP B 1009 REMARK 465 PRO B 1019 REMARK 465 GLN B 1020 REMARK 465 GLN B 1021 REMARK 465 GLY B 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 748 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 754 CG CD CE NZ REMARK 470 LYS A 875 CG CD CE NZ REMARK 470 LYS A 949 CD CE NZ REMARK 470 ARG A 962 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 973 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1012 CG OD1 OD2 REMARK 470 TYR A1016 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 723 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 739 CG CD CE NZ REMARK 470 ARG B 832 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 962 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 986 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 999 CG CD NE CZ NH1 NH2 REMARK 470 ILE B1018 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 704 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 750 30.05 -86.81 REMARK 500 ASN A 808 31.67 -145.37 REMARK 500 ASP A 837 63.19 -160.16 REMARK 500 ASP A 855 81.71 77.21 REMARK 500 PRO A 934 -177.63 -67.37 REMARK 500 ASP A1014 -150.05 -161.38 REMARK 500 GLN B 701 40.15 -71.76 REMARK 500 LEU B 718 -75.40 -99.49 REMARK 500 ALA B 722 -76.12 -60.21 REMARK 500 THR B 725 149.53 -174.19 REMARK 500 ARG B 836 -6.97 71.41 REMARK 500 ASP B 837 70.16 -154.19 REMARK 500 PRO B 848 -6.14 -51.33 REMARK 500 TYR B 869 119.52 -167.85 REMARK 500 THR B 993 -153.06 -164.32 REMARK 500 SER B 995 -160.24 -117.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 8H7X A 696 1022 UNP P00533 EGFR_HUMAN 696 1022 DBREF 8H7X B 696 1022 UNP P00533 EGFR_HUMAN 696 1022 SEQADV 8H7X GLY A 693 UNP P00533 EXPRESSION TAG SEQADV 8H7X ALA A 694 UNP P00533 EXPRESSION TAG SEQADV 8H7X MET A 695 UNP P00533 EXPRESSION TAG SEQADV 8H7X MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 8H7X SER A 797 UNP P00533 CYS 797 ENGINEERED MUTATION SEQADV 8H7X GLY B 693 UNP P00533 EXPRESSION TAG SEQADV 8H7X ALA B 694 UNP P00533 EXPRESSION TAG SEQADV 8H7X MET B 695 UNP P00533 EXPRESSION TAG SEQADV 8H7X MET B 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 8H7X SER B 797 UNP P00533 CYS 797 ENGINEERED MUTATION SEQRES 1 A 330 GLY ALA MET GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG SEQRES 2 A 330 ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU SEQRES 3 A 330 GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP SEQRES 4 A 330 ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE SEQRES 5 A 330 LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS SEQRES 6 A 330 GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP SEQRES 7 A 330 ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SEQRES 8 A 330 SER THR VAL GLN LEU ILE MET GLN LEU MET PRO PHE GLY SEQRES 9 A 330 SER LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE SEQRES 10 A 330 GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA SEQRES 11 A 330 LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS SEQRES 12 A 330 ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO SEQRES 13 A 330 GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU SEQRES 14 A 330 LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY SEQRES 15 A 330 LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU SEQRES 16 A 330 HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR SEQRES 17 A 330 GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER LYS SEQRES 18 A 330 PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE SEQRES 19 A 330 LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS SEQRES 20 A 330 THR ILE ASP VAL TYR MET ILE MET VAL LYS CYS TRP MET SEQRES 21 A 330 ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE SEQRES 22 A 330 ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR SEQRES 23 A 330 LEU VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER SEQRES 24 A 330 PRO THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU SEQRES 25 A 330 GLU ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU SEQRES 26 A 330 ILE PRO GLN GLN GLY SEQRES 1 B 330 GLY ALA MET GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG SEQRES 2 B 330 ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU SEQRES 3 B 330 GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP SEQRES 4 B 330 ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE SEQRES 5 B 330 LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS SEQRES 6 B 330 GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP SEQRES 7 B 330 ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SEQRES 8 B 330 SER THR VAL GLN LEU ILE MET GLN LEU MET PRO PHE GLY SEQRES 9 B 330 SER LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE SEQRES 10 B 330 GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA SEQRES 11 B 330 LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS SEQRES 12 B 330 ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO SEQRES 13 B 330 GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU SEQRES 14 B 330 LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY SEQRES 15 B 330 LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU SEQRES 16 B 330 HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR SEQRES 17 B 330 GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER LYS SEQRES 18 B 330 PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE SEQRES 19 B 330 LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS SEQRES 20 B 330 THR ILE ASP VAL TYR MET ILE MET VAL LYS CYS TRP MET SEQRES 21 B 330 ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE SEQRES 22 B 330 ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR SEQRES 23 B 330 LEU VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER SEQRES 24 B 330 PRO THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU SEQRES 25 B 330 GLU ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU SEQRES 26 B 330 ILE PRO GLN GLN GLY HET 6GY A1500 40 HETNAM 6GY 5-CHLORO-N~4~-[2-(DIMETHYLPHOSPHORYL)PHENYL]-N~2~-{2- HETNAM 2 6GY METHOXY-4-[4-(4-METHYLPIPERAZIN-1-YL)PIPERIDIN-1- HETNAM 3 6GY YL]PHENYL}PYRIMIDINE-2,4-DIAMINE HETSYN 6GY BRIGATINIB FORMUL 3 6GY C29 H39 CL N7 O2 P HELIX 1 AA1 LYS A 708 THR A 710 5 3 HELIX 2 AA2 SER A 752 VAL A 769 1 18 HELIX 3 AA3 SER A 797 HIS A 805 1 9 HELIX 4 AA4 LYS A 806 ILE A 809 5 4 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 PRO A 877 MET A 881 5 5 HELIX 8 AA8 ALA A 882 ARG A 889 1 8 HELIX 9 AA9 THR A 892 THR A 909 1 18 HELIX 10 AB1 PRO A 919 SER A 921 5 3 HELIX 11 AB2 GLU A 922 GLY A 930 1 9 HELIX 12 AB3 THR A 940 TRP A 951 1 12 HELIX 13 AB4 LYS A 960 ALA A 972 1 13 HELIX 14 AB5 ASP A 974 LEU A 979 1 6 HELIX 15 AB6 SER B 752 VAL B 769 1 18 HELIX 16 AB7 SER B 797 HIS B 805 1 9 HELIX 17 AB8 GLY B 810 ASP B 830 1 21 HELIX 18 AB9 ALA B 839 ARG B 841 5 3 HELIX 19 AC1 ALA B 882 ARG B 889 1 8 HELIX 20 AC2 THR B 892 THR B 909 1 18 HELIX 21 AC3 PRO B 919 LYS B 929 1 11 HELIX 22 AC4 THR B 940 TRP B 951 1 12 HELIX 23 AC5 LYS B 960 ASP B 974 1 15 HELIX 24 AC6 PRO B 975 TYR B 978 5 4 HELIX 25 AC7 ASP B 1012 LEU B 1017 1 6 SHEET 1 AA1 6 ARG A 705 ILE A 706 0 SHEET 2 AA1 6 LEU A 777 CYS A 781 1 O ILE A 780 N ARG A 705 SHEET 3 AA1 6 GLN A 787 GLN A 791 -1 O GLN A 787 N CYS A 781 SHEET 4 AA1 6 ILE A 740 LEU A 747 -1 N ALA A 743 O MET A 790 SHEET 5 AA1 6 GLY A 724 TRP A 731 -1 N TYR A 727 O ILE A 744 SHEET 6 AA1 6 PHE A 712 SER A 720 -1 N ILE A 715 O LYS A 728 SHEET 1 AA2 2 LEU A 833 VAL A 834 0 SHEET 2 AA2 2 LYS A 860 LEU A 861 -1 O LYS A 860 N VAL A 834 SHEET 1 AA3 2 VAL A 843 THR A 847 0 SHEET 2 AA3 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 SHEET 1 AA4 2 TYR A 869 HIS A 870 0 SHEET 2 AA4 2 ILE A 890 TYR A 891 -1 O TYR A 891 N TYR A 869 SHEET 1 AA5 5 PHE B 712 SER B 720 0 SHEET 2 AA5 5 THR B 725 TRP B 731 -1 O LYS B 728 N LYS B 716 SHEET 3 AA5 5 ILE B 740 GLU B 746 -1 O VAL B 742 N GLY B 729 SHEET 4 AA5 5 GLN B 787 GLN B 791 -1 O MET B 790 N ALA B 743 SHEET 5 AA5 5 LEU B 777 CYS B 781 -1 N CYS B 781 O GLN B 787 SHEET 1 AA6 2 LEU B 833 VAL B 834 0 SHEET 2 AA6 2 ALA B 859 LYS B 860 -1 O ALA B 859 N VAL B 834 SHEET 1 AA7 2 VAL B 843 THR B 847 0 SHEET 2 AA7 2 HIS B 850 ILE B 853 -1 O HIS B 850 N THR B 847 CRYST1 50.100 90.110 165.310 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006049 0.00000