data_8H9W # _entry.id 8H9W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8H9W pdb_00008h9w 10.2210/pdb8h9w/pdb WWPDB D_1300033121 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8H9W _pdbx_database_status.recvd_initial_deposition_date 2022-10-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Irie, K.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0002-8178-1552 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 4236 _citation.page_last 4236 _citation.title 'The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-023-39987-0 _citation.pdbx_database_id_PubMed 37454189 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Irie, K.' 1 0000-0002-8178-1552 primary 'Oda, Y.' 2 ? primary 'Sumikama, T.' 3 0000-0003-3696-5720 primary 'Oshima, A.' 4 0000-0003-1174-1368 primary 'Fujiyoshi, Y.' 5 0000-0002-8070-1493 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8H9W _cell.details ? _cell.formula_units_Z ? _cell.length_a 128.030 _cell.length_a_esd ? _cell.length_b 128.030 _cell.length_b_esd ? _cell.length_c 202.100 _cell.length_c_esd ? _cell.volume 3312758.710 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8H9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ion transport protein' 31397.279 1 ? N49K ? ? 2 non-polymer syn DODECYL-BETA-D-MALTOSIDE 510.615 2 ? ? ? ? 3 non-polymer syn CHAPSO 631.884 1 ? ? ? ? 4 non-polymer syn 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 678.940 8 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VOLTAGE-GATED SODIUM CHANNEL' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSGSMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFKQIVITIFTIEIILRIYVHRISFFKDPW SLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERF PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEV QSHEDNINNEIIKLREEIVELKELIKTSLKN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSGSMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFKQIVITIFTIEIILRIYVHRISFFKDPW SLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERF PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEV QSHEDNINNEIIKLREEIVELKELIKTSLKN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 TYR n 1 7 LEU n 1 8 ARG n 1 9 ILE n 1 10 THR n 1 11 ASN n 1 12 ILE n 1 13 VAL n 1 14 GLU n 1 15 SER n 1 16 SER n 1 17 PHE n 1 18 PHE n 1 19 THR n 1 20 LYS n 1 21 PHE n 1 22 ILE n 1 23 ILE n 1 24 TYR n 1 25 LEU n 1 26 ILE n 1 27 VAL n 1 28 LEU n 1 29 ASN n 1 30 GLY n 1 31 ILE n 1 32 THR n 1 33 MET n 1 34 GLY n 1 35 LEU n 1 36 GLU n 1 37 THR n 1 38 SER n 1 39 LYS n 1 40 THR n 1 41 PHE n 1 42 MET n 1 43 GLN n 1 44 SER n 1 45 PHE n 1 46 GLY n 1 47 VAL n 1 48 TYR n 1 49 THR n 1 50 THR n 1 51 LEU n 1 52 PHE n 1 53 LYS n 1 54 GLN n 1 55 ILE n 1 56 VAL n 1 57 ILE n 1 58 THR n 1 59 ILE n 1 60 PHE n 1 61 THR n 1 62 ILE n 1 63 GLU n 1 64 ILE n 1 65 ILE n 1 66 LEU n 1 67 ARG n 1 68 ILE n 1 69 TYR n 1 70 VAL n 1 71 HIS n 1 72 ARG n 1 73 ILE n 1 74 SER n 1 75 PHE n 1 76 PHE n 1 77 LYS n 1 78 ASP n 1 79 PRO n 1 80 TRP n 1 81 SER n 1 82 LEU n 1 83 PHE n 1 84 ASP n 1 85 PHE n 1 86 PHE n 1 87 VAL n 1 88 VAL n 1 89 ALA n 1 90 ILE n 1 91 SER n 1 92 LEU n 1 93 VAL n 1 94 PRO n 1 95 THR n 1 96 SER n 1 97 SER n 1 98 GLY n 1 99 PHE n 1 100 GLU n 1 101 ILE n 1 102 LEU n 1 103 ARG n 1 104 VAL n 1 105 LEU n 1 106 ARG n 1 107 VAL n 1 108 LEU n 1 109 ARG n 1 110 LEU n 1 111 PHE n 1 112 ARG n 1 113 LEU n 1 114 VAL n 1 115 THR n 1 116 ALA n 1 117 VAL n 1 118 PRO n 1 119 GLN n 1 120 MET n 1 121 ARG n 1 122 LYS n 1 123 ILE n 1 124 VAL n 1 125 SER n 1 126 ALA n 1 127 LEU n 1 128 ILE n 1 129 SER n 1 130 VAL n 1 131 ILE n 1 132 PRO n 1 133 GLY n 1 134 MET n 1 135 LEU n 1 136 SER n 1 137 VAL n 1 138 ILE n 1 139 ALA n 1 140 LEU n 1 141 MET n 1 142 THR n 1 143 LEU n 1 144 PHE n 1 145 PHE n 1 146 TYR n 1 147 ILE n 1 148 PHE n 1 149 ALA n 1 150 ILE n 1 151 MET n 1 152 ALA n 1 153 THR n 1 154 GLN n 1 155 LEU n 1 156 PHE n 1 157 GLY n 1 158 GLU n 1 159 ARG n 1 160 PHE n 1 161 PRO n 1 162 GLU n 1 163 TRP n 1 164 PHE n 1 165 GLY n 1 166 THR n 1 167 LEU n 1 168 GLY n 1 169 GLU n 1 170 SER n 1 171 PHE n 1 172 TYR n 1 173 THR n 1 174 LEU n 1 175 PHE n 1 176 GLN n 1 177 VAL n 1 178 MET n 1 179 THR n 1 180 LEU n 1 181 GLU n 1 182 SER n 1 183 TRP n 1 184 SER n 1 185 MET n 1 186 GLY n 1 187 ILE n 1 188 VAL n 1 189 ARG n 1 190 PRO n 1 191 LEU n 1 192 MET n 1 193 GLU n 1 194 VAL n 1 195 TYR n 1 196 PRO n 1 197 TYR n 1 198 ALA n 1 199 TRP n 1 200 VAL n 1 201 PHE n 1 202 PHE n 1 203 ILE n 1 204 PRO n 1 205 PHE n 1 206 ILE n 1 207 PHE n 1 208 VAL n 1 209 VAL n 1 210 THR n 1 211 PHE n 1 212 VAL n 1 213 MET n 1 214 ILE n 1 215 ASN n 1 216 LEU n 1 217 VAL n 1 218 VAL n 1 219 ALA n 1 220 ILE n 1 221 ILE n 1 222 VAL n 1 223 ASP n 1 224 ALA n 1 225 MET n 1 226 ALA n 1 227 ILE n 1 228 LEU n 1 229 ASN n 1 230 GLN n 1 231 LYS n 1 232 GLU n 1 233 GLU n 1 234 GLN n 1 235 HIS n 1 236 ILE n 1 237 ILE n 1 238 ASP n 1 239 GLU n 1 240 VAL n 1 241 GLN n 1 242 SER n 1 243 HIS n 1 244 GLU n 1 245 ASP n 1 246 ASN n 1 247 ILE n 1 248 ASN n 1 249 ASN n 1 250 GLU n 1 251 ILE n 1 252 ILE n 1 253 LYS n 1 254 LEU n 1 255 ARG n 1 256 GLU n 1 257 GLU n 1 258 ILE n 1 259 VAL n 1 260 GLU n 1 261 LEU n 1 262 LYS n 1 263 GLU n 1 264 LEU n 1 265 ILE n 1 266 LYS n 1 267 THR n 1 268 SER n 1 269 LEU n 1 270 LYS n 1 271 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 271 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Abu_1752 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aliarcobacter butzleri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 28197 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A8EVM5_ALIB4 _struct_ref.pdbx_db_accession A8EVM5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFD FFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWF GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEVQSHE DNINNEIIKLREEIVELKELIKTSLKN ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8H9W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 271 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A8EVM5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 267 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1267 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8H9W GLY A 1 ? UNP A8EVM5 ? ? 'expression tag' 997 1 1 8H9W SER A 2 ? UNP A8EVM5 ? ? 'expression tag' 998 2 1 8H9W GLY A 3 ? UNP A8EVM5 ? ? 'expression tag' 999 3 1 8H9W SER A 4 ? UNP A8EVM5 ? ? 'expression tag' 1000 4 1 8H9W LYS A 53 ? UNP A8EVM5 ASN 49 'engineered mutation' 1049 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1N7 non-polymer . CHAPSO '2-hydroxy-N,N-dimethyl-3-sulfo-N-(3-{[(3beta,5beta,7beta,12beta)-3,7,12-trihydroxy-24-oxocholan-24-yl]amino}propyl)propan-1-aminium' 'C32 H59 N2 O8 S 1' 631.884 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LMT D-saccharide . DODECYL-BETA-D-MALTOSIDE ? 'C24 H46 O11' 510.615 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PX4 non-polymer . 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE ? 'C36 H73 N O8 P 1' 678.940 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8H9W _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 6.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 81.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '9%-11% PEG MME 2000, 100 mM sodium chloride, 100 mM magnesium nitrate, 25 mM cadmium nitrate, 100 mM Tris-HCl, pH 8.4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-01-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate 69.00 _reflns.entry_id 8H9W _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 29.81 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 23425 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.81 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 26.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.01 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1270 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.883 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 94.21 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8H9W _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.70 _refine.ls_d_res_low 29.81 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22246 _refine.ls_number_reflns_R_free 1120 _refine.ls_number_reflns_R_work 21126 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.93 _refine.ls_percent_reflns_R_free 5.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2505 _refine.ls_R_factor_R_free 0.2638 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2498 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5YUC _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 26.5290 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3405 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 29.81 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 2304 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1816 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 470 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0089 ? 2331 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1536 ? 3105 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0571 ? 354 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0070 ? 314 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 20.5246 ? 983 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.70 2.75 . . 36 524 48.95 . . . 0.3138 . 0.3328 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.75 2.80 . . 27 683 62.06 . . . 0.3841 . 0.3141 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.80 2.85 . . 48 956 86.40 . . . 0.3156 . 0.3007 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.85 2.91 . . 65 1072 99.91 . . . 0.3034 . 0.2908 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.91 2.97 . . 60 1107 100.00 . . . 0.2791 . 0.2997 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.97 3.04 . . 61 1075 99.91 . . . 0.3019 . 0.2591 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.04 3.12 . . 58 1111 100.00 . . . 0.2551 . 0.2580 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.12 3.20 . . 63 1084 100.00 . . . 0.2600 . 0.2471 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.20 3.29 . . 79 1081 99.91 . . . 0.2208 . 0.2336 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.30 3.40 . . 51 1117 100.00 . . . 0.2124 . 0.2207 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.40 3.52 . . 51 1094 100.00 . . . 0.2544 . 0.2310 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.52 3.66 . . 62 1110 100.00 . . . 0.2070 . 0.2125 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.66 3.83 . . 44 1113 100.00 . . . 0.2724 . 0.2076 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.83 4.03 . . 43 1145 100.00 . . . 0.2242 . 0.2191 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.03 4.28 . . 66 1102 100.00 . . . 0.2671 . 0.2307 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.28 4.61 . . 56 1126 100.00 . . . 0.2295 . 0.2291 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.61 5.07 . . 68 1110 100.00 . . . 0.2026 . 0.2206 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.08 5.80 . . 54 1146 100.00 . . . 0.2627 . 0.2665 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.81 7.29 . . 59 1155 99.92 . . . 0.3288 . 0.3160 . . . . . . . . . . . 'X-RAY DIFFRACTION' 7.30 29.81 . . 69 1215 99.61 . . . 0.3232 . 0.2702 . . . . . . . . . . . # _struct.entry_id 8H9W _struct.title 'Crystal structure of voltage-gated sodium channel NavAb N49K mutant in calcium ion condition' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8H9W _struct_keywords.text 'ion channel, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? M N N 2 ? N N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA2 SER A 15 ? THR A 37 ? SER A 1011 THR A 1033 1 ? 23 HELX_P HELX_P2 AA3 SER A 38 ? HIS A 71 ? SER A 1034 HIS A 1067 1 ? 34 HELX_P HELX_P3 AA4 ILE A 73 ? LYS A 77 ? ILE A 1069 LYS A 1073 5 ? 5 HELX_P HELX_P4 AA5 ASP A 78 ? LEU A 92 ? ASP A 1074 LEU A 1088 1 ? 15 HELX_P HELX_P5 AA7 VAL A 107 ? LEU A 110 ? VAL A 1103 LEU A 1106 5 ? 4 HELX_P HELX_P6 AA8 PHE A 111 ? VAL A 117 ? PHE A 1107 VAL A 1113 1 ? 7 HELX_P HELX_P7 AA9 VAL A 117 ? ILE A 131 ? VAL A 1113 ILE A 1127 1 ? 15 HELX_P HELX_P8 AB1 MET A 134 ? GLY A 157 ? MET A 1130 GLY A 1153 1 ? 24 HELX_P HELX_P9 AB2 PHE A 160 ? GLY A 165 ? PHE A 1156 GLY A 1161 1 ? 6 HELX_P HELX_P10 AB3 THR A 166 ? THR A 179 ? THR A 1162 THR A 1175 1 ? 14 HELX_P HELX_P11 AB4 ILE A 187 ? GLU A 193 ? ILE A 1183 GLU A 1189 1 ? 7 HELX_P HELX_P12 AB5 ALA A 198 ? ASN A 229 ? ALA A 1194 ASN A 1225 1 ? 32 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 8H9W _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007811 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007811 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004948 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 997 ? ? ? A . n A 1 2 SER 2 998 ? ? ? A . n A 1 3 GLY 3 999 ? ? ? A . n A 1 4 SER 4 1000 ? ? ? A . n A 1 5 MET 5 1001 1001 MET MET A . n A 1 6 TYR 6 1002 1002 TYR TYR A . n A 1 7 LEU 7 1003 1003 LEU LEU A . n A 1 8 ARG 8 1004 1004 ARG ARG A . n A 1 9 ILE 9 1005 1005 ILE ILE A . n A 1 10 THR 10 1006 1006 THR THR A . n A 1 11 ASN 11 1007 1007 ASN ASN A . n A 1 12 ILE 12 1008 1008 ILE ILE A . n A 1 13 VAL 13 1009 1009 VAL VAL A . n A 1 14 GLU 14 1010 1010 GLU GLU A . n A 1 15 SER 15 1011 1011 SER SER A . n A 1 16 SER 16 1012 1012 SER SER A . n A 1 17 PHE 17 1013 1013 PHE PHE A . n A 1 18 PHE 18 1014 1014 PHE PHE A . n A 1 19 THR 19 1015 1015 THR THR A . n A 1 20 LYS 20 1016 1016 LYS LYS A . n A 1 21 PHE 21 1017 1017 PHE PHE A . n A 1 22 ILE 22 1018 1018 ILE ILE A . n A 1 23 ILE 23 1019 1019 ILE ILE A . n A 1 24 TYR 24 1020 1020 TYR TYR A . n A 1 25 LEU 25 1021 1021 LEU LEU A . n A 1 26 ILE 26 1022 1022 ILE ILE A . n A 1 27 VAL 27 1023 1023 VAL VAL A . n A 1 28 LEU 28 1024 1024 LEU LEU A . n A 1 29 ASN 29 1025 1025 ASN ASN A . n A 1 30 GLY 30 1026 1026 GLY GLY A . n A 1 31 ILE 31 1027 1027 ILE ILE A . n A 1 32 THR 32 1028 1028 THR THR A . n A 1 33 MET 33 1029 1029 MET MET A . n A 1 34 GLY 34 1030 1030 GLY GLY A . n A 1 35 LEU 35 1031 1031 LEU LEU A . n A 1 36 GLU 36 1032 1032 GLU GLU A . n A 1 37 THR 37 1033 1033 THR THR A . n A 1 38 SER 38 1034 1034 SER SER A . n A 1 39 LYS 39 1035 1035 LYS LYS A . n A 1 40 THR 40 1036 1036 THR THR A . n A 1 41 PHE 41 1037 1037 PHE PHE A . n A 1 42 MET 42 1038 1038 MET MET A . n A 1 43 GLN 43 1039 1039 GLN GLN A . n A 1 44 SER 44 1040 1040 SER SER A . n A 1 45 PHE 45 1041 1041 PHE PHE A . n A 1 46 GLY 46 1042 1042 GLY GLY A . n A 1 47 VAL 47 1043 1043 VAL VAL A . n A 1 48 TYR 48 1044 1044 TYR TYR A . n A 1 49 THR 49 1045 1045 THR THR A . n A 1 50 THR 50 1046 1046 THR THR A . n A 1 51 LEU 51 1047 1047 LEU LEU A . n A 1 52 PHE 52 1048 1048 PHE PHE A . n A 1 53 LYS 53 1049 1049 LYS LYS A . n A 1 54 GLN 54 1050 1050 GLN GLN A . n A 1 55 ILE 55 1051 1051 ILE ILE A . n A 1 56 VAL 56 1052 1052 VAL VAL A . n A 1 57 ILE 57 1053 1053 ILE ILE A . n A 1 58 THR 58 1054 1054 THR THR A . n A 1 59 ILE 59 1055 1055 ILE ILE A . n A 1 60 PHE 60 1056 1056 PHE PHE A . n A 1 61 THR 61 1057 1057 THR THR A . n A 1 62 ILE 62 1058 1058 ILE ILE A . n A 1 63 GLU 63 1059 1059 GLU GLU A . n A 1 64 ILE 64 1060 1060 ILE ILE A . n A 1 65 ILE 65 1061 1061 ILE ILE A . n A 1 66 LEU 66 1062 1062 LEU LEU A . n A 1 67 ARG 67 1063 1063 ARG ARG A . n A 1 68 ILE 68 1064 1064 ILE ILE A . n A 1 69 TYR 69 1065 1065 TYR TYR A . n A 1 70 VAL 70 1066 1066 VAL VAL A . n A 1 71 HIS 71 1067 1067 HIS HIS A . n A 1 72 ARG 72 1068 1068 ARG ARG A . n A 1 73 ILE 73 1069 1069 ILE ILE A . n A 1 74 SER 74 1070 1070 SER SER A . n A 1 75 PHE 75 1071 1071 PHE PHE A . n A 1 76 PHE 76 1072 1072 PHE PHE A . n A 1 77 LYS 77 1073 1073 LYS LYS A . n A 1 78 ASP 78 1074 1074 ASP ASP A . n A 1 79 PRO 79 1075 1075 PRO PRO A . n A 1 80 TRP 80 1076 1076 TRP TRP A . n A 1 81 SER 81 1077 1077 SER SER A . n A 1 82 LEU 82 1078 1078 LEU LEU A . n A 1 83 PHE 83 1079 1079 PHE PHE A . n A 1 84 ASP 84 1080 1080 ASP ASP A . n A 1 85 PHE 85 1081 1081 PHE PHE A . n A 1 86 PHE 86 1082 1082 PHE PHE A . n A 1 87 VAL 87 1083 1083 VAL VAL A . n A 1 88 VAL 88 1084 1084 VAL VAL A . n A 1 89 ALA 89 1085 1085 ALA ALA A . n A 1 90 ILE 90 1086 1086 ILE ILE A . n A 1 91 SER 91 1087 1087 SER SER A . n A 1 92 LEU 92 1088 1088 LEU LEU A . n A 1 93 VAL 93 1089 1089 VAL VAL A . n A 1 94 PRO 94 1090 ? ? ? A . n A 1 95 THR 95 1091 ? ? ? A . n A 1 96 SER 96 1092 ? ? ? A . n A 1 97 SER 97 1093 ? ? ? A . n A 1 98 GLY 98 1094 ? ? ? A . n A 1 99 PHE 99 1095 ? ? ? A . n A 1 100 GLU 100 1096 ? ? ? A . n A 1 101 ILE 101 1097 1097 ILE ILE A . n A 1 102 LEU 102 1098 1098 LEU LEU A . n A 1 103 ARG 103 1099 1099 ARG ARG A . n A 1 104 VAL 104 1100 1100 VAL VAL A . n A 1 105 LEU 105 1101 1101 LEU LEU A . n A 1 106 ARG 106 1102 1102 ARG ARG A . n A 1 107 VAL 107 1103 1103 VAL VAL A . n A 1 108 LEU 108 1104 1104 LEU LEU A . n A 1 109 ARG 109 1105 1105 ARG ARG A . n A 1 110 LEU 110 1106 1106 LEU LEU A . n A 1 111 PHE 111 1107 1107 PHE PHE A . n A 1 112 ARG 112 1108 1108 ARG ARG A . n A 1 113 LEU 113 1109 1109 LEU LEU A . n A 1 114 VAL 114 1110 1110 VAL VAL A . n A 1 115 THR 115 1111 1111 THR THR A . n A 1 116 ALA 116 1112 1112 ALA ALA A . n A 1 117 VAL 117 1113 1113 VAL VAL A . n A 1 118 PRO 118 1114 1114 PRO PRO A . n A 1 119 GLN 119 1115 1115 GLN GLN A . n A 1 120 MET 120 1116 1116 MET MET A . n A 1 121 ARG 121 1117 1117 ARG ARG A . n A 1 122 LYS 122 1118 1118 LYS LYS A . n A 1 123 ILE 123 1119 1119 ILE ILE A . n A 1 124 VAL 124 1120 1120 VAL VAL A . n A 1 125 SER 125 1121 1121 SER SER A . n A 1 126 ALA 126 1122 1122 ALA ALA A . n A 1 127 LEU 127 1123 1123 LEU LEU A . n A 1 128 ILE 128 1124 1124 ILE ILE A . n A 1 129 SER 129 1125 1125 SER SER A . n A 1 130 VAL 130 1126 1126 VAL VAL A . n A 1 131 ILE 131 1127 1127 ILE ILE A . n A 1 132 PRO 132 1128 1128 PRO PRO A . n A 1 133 GLY 133 1129 1129 GLY GLY A . n A 1 134 MET 134 1130 1130 MET MET A . n A 1 135 LEU 135 1131 1131 LEU LEU A . n A 1 136 SER 136 1132 1132 SER SER A . n A 1 137 VAL 137 1133 1133 VAL VAL A . n A 1 138 ILE 138 1134 1134 ILE ILE A . n A 1 139 ALA 139 1135 1135 ALA ALA A . n A 1 140 LEU 140 1136 1136 LEU LEU A . n A 1 141 MET 141 1137 1137 MET MET A . n A 1 142 THR 142 1138 1138 THR THR A . n A 1 143 LEU 143 1139 1139 LEU LEU A . n A 1 144 PHE 144 1140 1140 PHE PHE A . n A 1 145 PHE 145 1141 1141 PHE PHE A . n A 1 146 TYR 146 1142 1142 TYR TYR A . n A 1 147 ILE 147 1143 1143 ILE ILE A . n A 1 148 PHE 148 1144 1144 PHE PHE A . n A 1 149 ALA 149 1145 1145 ALA ALA A . n A 1 150 ILE 150 1146 1146 ILE ILE A . n A 1 151 MET 151 1147 1147 MET MET A . n A 1 152 ALA 152 1148 1148 ALA ALA A . n A 1 153 THR 153 1149 1149 THR THR A . n A 1 154 GLN 154 1150 1150 GLN GLN A . n A 1 155 LEU 155 1151 1151 LEU LEU A . n A 1 156 PHE 156 1152 1152 PHE PHE A . n A 1 157 GLY 157 1153 1153 GLY GLY A . n A 1 158 GLU 158 1154 1154 GLU GLU A . n A 1 159 ARG 159 1155 1155 ARG ALA A . n A 1 160 PHE 160 1156 1156 PHE PHE A . n A 1 161 PRO 161 1157 1157 PRO PRO A . n A 1 162 GLU 162 1158 1158 GLU GLU A . n A 1 163 TRP 163 1159 1159 TRP TRP A . n A 1 164 PHE 164 1160 1160 PHE PHE A . n A 1 165 GLY 165 1161 1161 GLY GLY A . n A 1 166 THR 166 1162 1162 THR THR A . n A 1 167 LEU 167 1163 1163 LEU LEU A . n A 1 168 GLY 168 1164 1164 GLY GLY A . n A 1 169 GLU 169 1165 1165 GLU GLU A . n A 1 170 SER 170 1166 1166 SER SER A . n A 1 171 PHE 171 1167 1167 PHE PHE A . n A 1 172 TYR 172 1168 1168 TYR TYR A . n A 1 173 THR 173 1169 1169 THR THR A . n A 1 174 LEU 174 1170 1170 LEU LEU A . n A 1 175 PHE 175 1171 1171 PHE PHE A . n A 1 176 GLN 176 1172 1172 GLN GLN A . n A 1 177 VAL 177 1173 1173 VAL VAL A . n A 1 178 MET 178 1174 1174 MET MET A . n A 1 179 THR 179 1175 1175 THR THR A . n A 1 180 LEU 180 1176 1176 LEU LEU A . n A 1 181 GLU 181 1177 1177 GLU GLU A . n A 1 182 SER 182 1178 1178 SER SER A . n A 1 183 TRP 183 1179 1179 TRP TRP A . n A 1 184 SER 184 1180 1180 SER SER A . n A 1 185 MET 185 1181 1181 MET MET A . n A 1 186 GLY 186 1182 1182 GLY GLY A . n A 1 187 ILE 187 1183 1183 ILE ILE A . n A 1 188 VAL 188 1184 1184 VAL VAL A . n A 1 189 ARG 189 1185 1185 ARG ARG A . n A 1 190 PRO 190 1186 1186 PRO PRO A . n A 1 191 LEU 191 1187 1187 LEU LEU A . n A 1 192 MET 192 1188 1188 MET MET A . n A 1 193 GLU 193 1189 1189 GLU GLU A . n A 1 194 VAL 194 1190 1190 VAL VAL A . n A 1 195 TYR 195 1191 1191 TYR TYR A . n A 1 196 PRO 196 1192 1192 PRO PRO A . n A 1 197 TYR 197 1193 1193 TYR TYR A . n A 1 198 ALA 198 1194 1194 ALA ALA A . n A 1 199 TRP 199 1195 1195 TRP TRP A . n A 1 200 VAL 200 1196 1196 VAL VAL A . n A 1 201 PHE 201 1197 1197 PHE PHE A . n A 1 202 PHE 202 1198 1198 PHE PHE A . n A 1 203 ILE 203 1199 1199 ILE ILE A . n A 1 204 PRO 204 1200 1200 PRO PRO A . n A 1 205 PHE 205 1201 1201 PHE PHE A . n A 1 206 ILE 206 1202 1202 ILE ILE A . n A 1 207 PHE 207 1203 1203 PHE PHE A . n A 1 208 VAL 208 1204 1204 VAL VAL A . n A 1 209 VAL 209 1205 1205 VAL VAL A . n A 1 210 THR 210 1206 1206 THR THR A . n A 1 211 PHE 211 1207 1207 PHE PHE A . n A 1 212 VAL 212 1208 1208 VAL VAL A . n A 1 213 MET 213 1209 1209 MET MET A . n A 1 214 ILE 214 1210 1210 ILE ILE A . n A 1 215 ASN 215 1211 1211 ASN ASN A . n A 1 216 LEU 216 1212 1212 LEU LEU A . n A 1 217 VAL 217 1213 1213 VAL VAL A . n A 1 218 VAL 218 1214 1214 VAL VAL A . n A 1 219 ALA 219 1215 1215 ALA ALA A . n A 1 220 ILE 220 1216 1216 ILE ILE A . n A 1 221 ILE 221 1217 1217 ILE ILE A . n A 1 222 VAL 222 1218 1218 VAL VAL A . n A 1 223 ASP 223 1219 1219 ASP ASP A . n A 1 224 ALA 224 1220 1220 ALA ALA A . n A 1 225 MET 225 1221 1221 MET MET A . n A 1 226 ALA 226 1222 1222 ALA ALA A . n A 1 227 ILE 227 1223 1223 ILE ILE A . n A 1 228 LEU 228 1224 1224 LEU LEU A . n A 1 229 ASN 229 1225 1225 ASN ASN A . n A 1 230 GLN 230 1226 ? ? ? A . n A 1 231 LYS 231 1227 ? ? ? A . n A 1 232 GLU 232 1228 ? ? ? A . n A 1 233 GLU 233 1229 ? ? ? A . n A 1 234 GLN 234 1230 ? ? ? A . n A 1 235 HIS 235 1231 ? ? ? A . n A 1 236 ILE 236 1232 ? ? ? A . n A 1 237 ILE 237 1233 ? ? ? A . n A 1 238 ASP 238 1234 ? ? ? A . n A 1 239 GLU 239 1235 ? ? ? A . n A 1 240 VAL 240 1236 ? ? ? A . n A 1 241 GLN 241 1237 ? ? ? A . n A 1 242 SER 242 1238 ? ? ? A . n A 1 243 HIS 243 1239 ? ? ? A . n A 1 244 GLU 244 1240 ? ? ? A . n A 1 245 ASP 245 1241 ? ? ? A . n A 1 246 ASN 246 1242 ? ? ? A . n A 1 247 ILE 247 1243 ? ? ? A . n A 1 248 ASN 248 1244 ? ? ? A . n A 1 249 ASN 249 1245 ? ? ? A . n A 1 250 GLU 250 1246 ? ? ? A . n A 1 251 ILE 251 1247 ? ? ? A . n A 1 252 ILE 252 1248 ? ? ? A . n A 1 253 LYS 253 1249 ? ? ? A . n A 1 254 LEU 254 1250 ? ? ? A . n A 1 255 ARG 255 1251 ? ? ? A . n A 1 256 GLU 256 1252 ? ? ? A . n A 1 257 GLU 257 1253 ? ? ? A . n A 1 258 ILE 258 1254 ? ? ? A . n A 1 259 VAL 259 1255 ? ? ? A . n A 1 260 GLU 260 1256 ? ? ? A . n A 1 261 LEU 261 1257 ? ? ? A . n A 1 262 LYS 262 1258 ? ? ? A . n A 1 263 GLU 263 1259 ? ? ? A . n A 1 264 LEU 264 1260 ? ? ? A . n A 1 265 ILE 265 1261 ? ? ? A . n A 1 266 LYS 266 1262 ? ? ? A . n A 1 267 THR 267 1263 ? ? ? A . n A 1 268 SER 268 1264 ? ? ? A . n A 1 269 LEU 269 1265 ? ? ? A . n A 1 270 LYS 270 1266 ? ? ? A . n A 1 271 ASN 271 1267 ? ? ? A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email kirie@wakayama-med.ac.jp _pdbx_contact_author.name_first Katsumasa _pdbx_contact_author.name_last Irie _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8178-1552 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LMT 1 1301 1303 LMT LMT A . C 3 1N7 1 1302 1304 1N7 1N7 A . D 4 PX4 1 1303 1305 PX4 PX4 A . E 4 PX4 1 1304 1306 PX4 PX4 A . F 4 PX4 1 1305 1 PX4 PX4 A . G 4 PX4 1 1306 2 PX4 PX4 A . H 4 PX4 1 1307 3 PX4 PX4 A . I 4 PX4 1 1308 4 PX4 PX4 A . J 4 PX4 1 1309 5 PX4 PX4 A . K 4 PX4 1 1310 6 PX4 PX4 A . L 5 CA 1 1311 1 CA CA A . M 2 LMT 1 1312 1 LMT LMT A . N 6 HOH 1 1401 30 HOH HOH A . N 6 HOH 2 1402 1 HOH HOH A . N 6 HOH 3 1403 12 HOH HOH A . N 6 HOH 4 1404 3 HOH HOH A . N 6 HOH 5 1405 28 HOH HOH A . N 6 HOH 6 1406 4 HOH HOH A . N 6 HOH 7 1407 2 HOH HOH A . N 6 HOH 8 1408 18 HOH HOH A . N 6 HOH 9 1409 23 HOH HOH A . N 6 HOH 10 1410 5 HOH HOH A . N 6 HOH 11 1411 6 HOH HOH A . N 6 HOH 12 1412 30 HOH HOH A . N 6 HOH 13 1413 32 HOH HOH A . N 6 HOH 14 1414 27 HOH HOH A . N 6 HOH 15 1415 4 HOH HOH A . N 6 HOH 16 1416 66 HOH HOH A . N 6 HOH 17 1417 11 HOH HOH A . N 6 HOH 18 1418 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 36040 ? 1 MORE -182 ? 1 'SSA (A^2)' 50190 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y,x,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y,-x,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 1311 ? L CA . 2 1 A HOH 1405 ? N HOH . 3 1 A HOH 1409 ? N HOH . 4 1 A HOH 1412 ? N HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-07-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x,z 3 y,-x,z 4 x,-y,-z 5 -x,y,-z 6 -x,-y,z 7 y,x,-z 8 -y,-x,-z 9 x+1/2,y+1/2,z+1/2 10 -y+1/2,x+1/2,z+1/2 11 y+1/2,-x+1/2,z+1/2 12 x+1/2,-y+1/2,-z+1/2 13 -x+1/2,y+1/2,-z+1/2 14 -x+1/2,-y+1/2,z+1/2 15 y+1/2,x+1/2,-z+1/2 16 -y+1/2,-x+1/2,-z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 30.354517134 -22.5834476166 28.3659532636 0.977270536747 ? 0.402578115326 ? -0.238452098095 ? 0.957070371112 ? 0.133913239695 ? 0.826172817368 ? 4.70087383866 ? -0.15550193837 ? 0.1065595968 ? 3.34114838313 ? -1.50512726033 ? 2.08700716664 ? 0.242789227255 ? 0.211582085103 ? -0.178175301135 ? 0.161054603849 ? -0.00849016157245 ? -0.454406710238 ? 1.16610292957 ? 1.1890502736 ? 0.0830806968486 ? 2 'X-RAY DIFFRACTION' ? refined -0.392831783841 -16.9127662315 29.166882825 0.643918185851 ? 0.0410342754797 ? 0.00859652019005 ? 0.397986149242 ? 0.0652900005045 ? 0.517102696016 ? 3.70904281298 ? 0.507798819615 ? 1.08311381097 ? 0.957920303655 ? -0.71020855077 ? 3.60676805728 ? -0.0103119926842 ? -0.36922414303 ? -0.149268606235 ? 0.482618869556 ? -0.091507491709 ? -0.0661925421577 ? 0.407483110387 ? 0.0118528482726 ? -0.153474755709 ? 3 'X-RAY DIFFRACTION' ? refined -7.92509687707 -9.78265832351 19.6303856525 0.398927925501 ? -0.0653003936649 ? 0.065102287201 ? 0.345680889187 ? 0.0400203062148 ? 0.37648794797 ? 4.20131453947 ? 0.462714734005 ? -0.29140637881 ? 2.44490998533 ? 0.310486041236 ? 4.6467653103 ? -0.0380297866609 ? -0.152567373261 ? -0.0627076710076 ? 0.0714619993636 ? -0.0922152312554 ? -0.0206340619357 ? 0.475865734532 ? -0.33908840871 ? 0.00187549462543 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A 1 A 999 ? A 110 A 1113 ? ? ;chain 'A' and (resid 999 through 1113 ) ; 2 'X-RAY DIFFRACTION' 2 A 111 A 1114 ? A 149 A 1152 ? ? ;chain 'A' and (resid 1114 through 1152 ) ; 3 'X-RAY DIFFRACTION' 3 A 150 A 1153 ? A 222 A 1225 ? ? ;chain 'A' and (resid 1153 through 1225 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 1.18.2_3874 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 8H9W _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 1155 ? CG ? A ARG 159 CG 2 1 Y 1 A ARG 1155 ? CD ? A ARG 159 CD 3 1 Y 1 A ARG 1155 ? NE ? A ARG 159 NE 4 1 Y 1 A ARG 1155 ? CZ ? A ARG 159 CZ 5 1 Y 1 A ARG 1155 ? NH1 ? A ARG 159 NH1 6 1 Y 1 A ARG 1155 ? NH2 ? A ARG 159 NH2 7 1 N 1 A 1N7 1302 ? N2 ? C 1N7 1 N2 8 1 N 1 A 1N7 1302 ? C28 ? C 1N7 1 C28 9 1 N 1 A 1N7 1302 ? C29 ? C 1N7 1 C29 10 1 N 1 A 1N7 1302 ? C30 ? C 1N7 1 C30 11 1 N 1 A 1N7 1302 ? C31 ? C 1N7 1 C31 12 1 N 1 A 1N7 1302 ? C32 ? C 1N7 1 C32 13 1 N 1 A 1N7 1302 ? O5 ? C 1N7 1 O5 14 1 N 1 A 1N7 1302 ? S1 ? C 1N7 1 S1 15 1 N 1 A 1N7 1302 ? O7 ? C 1N7 1 O7 16 1 N 1 A 1N7 1302 ? O8 ? C 1N7 1 O8 17 1 N 1 A 1N7 1302 ? O6 ? C 1N7 1 O6 18 1 N 1 A PX4 1307 ? C22 ? H PX4 1 C22 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 997 ? A GLY 1 2 1 Y 1 A SER 998 ? A SER 2 3 1 Y 1 A GLY 999 ? A GLY 3 4 1 Y 1 A SER 1000 ? A SER 4 5 1 Y 1 A PRO 1090 ? A PRO 94 6 1 Y 1 A THR 1091 ? A THR 95 7 1 Y 1 A SER 1092 ? A SER 96 8 1 Y 1 A SER 1093 ? A SER 97 9 1 Y 1 A GLY 1094 ? A GLY 98 10 1 Y 1 A PHE 1095 ? A PHE 99 11 1 Y 1 A GLU 1096 ? A GLU 100 12 1 Y 1 A GLN 1226 ? A GLN 230 13 1 Y 1 A LYS 1227 ? A LYS 231 14 1 Y 1 A GLU 1228 ? A GLU 232 15 1 Y 1 A GLU 1229 ? A GLU 233 16 1 Y 1 A GLN 1230 ? A GLN 234 17 1 Y 1 A HIS 1231 ? A HIS 235 18 1 Y 1 A ILE 1232 ? A ILE 236 19 1 Y 1 A ILE 1233 ? A ILE 237 20 1 Y 1 A ASP 1234 ? A ASP 238 21 1 Y 1 A GLU 1235 ? A GLU 239 22 1 Y 1 A VAL 1236 ? A VAL 240 23 1 Y 1 A GLN 1237 ? A GLN 241 24 1 Y 1 A SER 1238 ? A SER 242 25 1 Y 1 A HIS 1239 ? A HIS 243 26 1 Y 1 A GLU 1240 ? A GLU 244 27 1 Y 1 A ASP 1241 ? A ASP 245 28 1 Y 1 A ASN 1242 ? A ASN 246 29 1 Y 1 A ILE 1243 ? A ILE 247 30 1 Y 1 A ASN 1244 ? A ASN 248 31 1 Y 1 A ASN 1245 ? A ASN 249 32 1 Y 1 A GLU 1246 ? A GLU 250 33 1 Y 1 A ILE 1247 ? A ILE 251 34 1 Y 1 A ILE 1248 ? A ILE 252 35 1 Y 1 A LYS 1249 ? A LYS 253 36 1 Y 1 A LEU 1250 ? A LEU 254 37 1 Y 1 A ARG 1251 ? A ARG 255 38 1 Y 1 A GLU 1252 ? A GLU 256 39 1 Y 1 A GLU 1253 ? A GLU 257 40 1 Y 1 A ILE 1254 ? A ILE 258 41 1 Y 1 A VAL 1255 ? A VAL 259 42 1 Y 1 A GLU 1256 ? A GLU 260 43 1 Y 1 A LEU 1257 ? A LEU 261 44 1 Y 1 A LYS 1258 ? A LYS 262 45 1 Y 1 A GLU 1259 ? A GLU 263 46 1 Y 1 A LEU 1260 ? A LEU 264 47 1 Y 1 A ILE 1261 ? A ILE 265 48 1 Y 1 A LYS 1262 ? A LYS 266 49 1 Y 1 A THR 1263 ? A THR 267 50 1 Y 1 A SER 1264 ? A SER 268 51 1 Y 1 A LEU 1265 ? A LEU 269 52 1 Y 1 A LYS 1266 ? A LYS 270 53 1 Y 1 A ASN 1267 ? A ASN 271 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 17K17795 1 'Japan Society for the Promotion of Science (JSPS)' Japan 20K09193 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id CA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id CA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 DODECYL-BETA-D-MALTOSIDE LMT 3 CHAPSO 1N7 4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE PX4 5 'CALCIUM ION' CA 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'I 4 2 2' _space_group.name_Hall 'I 4 2' _space_group.IT_number 97 _space_group.crystal_system tetragonal _space_group.id 1 #