HEADER MEMBRANE PROTEIN 26-OCT-22 8HA1 TITLE CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB N49K/L176G TITLE 2 MUTANT IN SODIUM ION CONDITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VOLTAGE-GATED SODIUM CHANNEL; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIARCOBACTER BUTZLERI; SOURCE 3 ORGANISM_TAXID: 28197; SOURCE 4 GENE: ABU_1752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ION CHANNEL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE,Y.ODA REVDAT 1 26-JUL-23 8HA1 0 JRNL AUTH K.IRIE,Y.ODA,T.SUMIKAMA,A.OSHIMA,Y.FUJIYOSHI JRNL TITL THE STRUCTURAL BASIS OF DIVALENT CATION BLOCK IN A JRNL TITL 2 TETRAMERIC PROKARYOTIC SODIUM CHANNEL. JRNL REF NAT COMMUN V. 14 4236 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37454189 JRNL DOI 10.1038/S41467-023-39987-0 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 10410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.292 REMARK 3 R VALUE (WORKING SET) : 0.291 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9100 - 9.4200 0.99 577 24 0.2920 0.3346 REMARK 3 2 9.3800 - 7.5100 1.00 517 36 0.2238 0.2801 REMARK 3 3 7.5000 - 6.5700 1.00 536 28 0.3099 0.2437 REMARK 3 4 6.5700 - 5.9700 1.00 514 28 0.3461 0.3805 REMARK 3 5 5.9700 - 5.5500 1.00 518 22 0.3214 0.3030 REMARK 3 6 5.5500 - 5.2200 1.00 511 29 0.3096 0.3181 REMARK 3 7 5.2200 - 4.9600 1.00 513 23 0.2692 0.3024 REMARK 3 8 4.9600 - 4.7500 1.00 504 39 0.2674 0.2443 REMARK 3 9 4.7500 - 4.5700 1.00 498 24 0.2783 0.2270 REMARK 3 10 4.5600 - 4.4100 1.00 503 25 0.2927 0.2322 REMARK 3 11 4.4100 - 4.2700 1.00 506 28 0.2760 0.3047 REMARK 3 12 4.2700 - 4.1500 1.00 502 28 0.2861 0.3300 REMARK 3 13 4.1500 - 4.0400 1.00 501 29 0.2761 0.3436 REMARK 3 14 4.0400 - 3.9400 1.00 498 20 0.2678 0.2604 REMARK 3 15 3.9400 - 3.8500 1.00 504 20 0.2961 0.3152 REMARK 3 16 3.8500 - 3.7700 1.00 510 19 0.3327 0.2629 REMARK 3 17 3.7700 - 3.7000 1.00 518 23 0.3378 0.3563 REMARK 3 18 3.6900 - 3.6300 1.00 486 22 0.3803 0.3571 REMARK 3 19 3.6300 - 3.5600 0.99 487 28 0.4491 0.4166 REMARK 3 20 3.5600 - 3.5000 0.39 203 9 0.5245 0.5114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 152.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 155.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2331 REMARK 3 ANGLE : 0.735 3106 REMARK 3 CHIRALITY : 0.046 354 REMARK 3 PLANARITY : 0.004 315 REMARK 3 DIHEDRAL : 19.087 985 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.7693 -16.7295 25.7358 REMARK 3 T TENSOR REMARK 3 T11: 1.1689 T22: 0.6227 REMARK 3 T33: 1.0300 T12: 0.0552 REMARK 3 T13: -0.0653 T23: 0.2076 REMARK 3 L TENSOR REMARK 3 L11: 3.6960 L22: 2.2875 REMARK 3 L33: 3.6669 L12: -1.3477 REMARK 3 L13: 1.0933 L23: 0.6286 REMARK 3 S TENSOR REMARK 3 S11: -0.2840 S12: -0.1152 S13: -0.0018 REMARK 3 S21: 0.6272 S22: 0.1511 S23: -0.3761 REMARK 3 S31: 0.8957 S32: 0.6401 S33: 0.0587 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300033128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10747 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 39.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YUC REMARK 200 REMARK 200 REMARK: PYRAMIDAL SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9%-11% PEG MME 2000, 100 MM SODIUM REMARK 280 CHLORIDE, 100 MM MAGNESIUM NITRATE, 25 MM CADMIUM NITRATE, 100 REMARK 280 MM TRIS-HCL, PH 8.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.45500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.89000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.45500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 100.89000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.45500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 100.89000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.45500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 100.89000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.45500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.89000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.45500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 100.89000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.45500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.89000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.45500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.89000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A1312 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A1313 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1406 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1413 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 997 REMARK 465 SER A 998 REMARK 465 GLY A 999 REMARK 465 SER A 1000 REMARK 465 SER A 1092 REMARK 465 SER A 1093 REMARK 465 GLY A 1094 REMARK 465 PHE A 1095 REMARK 465 GLU A 1096 REMARK 465 LYS A 1227 REMARK 465 GLU A 1228 REMARK 465 GLU A 1229 REMARK 465 GLN A 1230 REMARK 465 HIS A 1231 REMARK 465 ILE A 1232 REMARK 465 ILE A 1233 REMARK 465 ASP A 1234 REMARK 465 GLU A 1235 REMARK 465 VAL A 1236 REMARK 465 GLN A 1237 REMARK 465 SER A 1238 REMARK 465 HIS A 1239 REMARK 465 GLU A 1240 REMARK 465 ASP A 1241 REMARK 465 ASN A 1242 REMARK 465 ILE A 1243 REMARK 465 ASN A 1244 REMARK 465 ASN A 1245 REMARK 465 GLU A 1246 REMARK 465 ILE A 1247 REMARK 465 ILE A 1248 REMARK 465 LYS A 1249 REMARK 465 LEU A 1250 REMARK 465 ARG A 1251 REMARK 465 GLU A 1252 REMARK 465 GLU A 1253 REMARK 465 ILE A 1254 REMARK 465 VAL A 1255 REMARK 465 GLU A 1256 REMARK 465 LEU A 1257 REMARK 465 LYS A 1258 REMARK 465 GLU A 1259 REMARK 465 LEU A 1260 REMARK 465 ILE A 1261 REMARK 465 LYS A 1262 REMARK 465 THR A 1263 REMARK 465 SER A 1264 REMARK 465 LEU A 1265 REMARK 465 LYS A 1266 REMARK 465 ASN A 1267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1155 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 1209 C36 PX4 A 1304 3555 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A1183 -63.90 -120.09 REMARK 500 VAL A1190 -60.85 -121.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1412 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1413 DISTANCE = 8.42 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1N7 A 1303 REMARK 610 PX4 A 1305 DBREF 8HA1 A 1001 1267 UNP A8EVM5 A8EVM5_ALIB4 1 267 SEQADV 8HA1 GLY A 997 UNP A8EVM5 EXPRESSION TAG SEQADV 8HA1 SER A 998 UNP A8EVM5 EXPRESSION TAG SEQADV 8HA1 GLY A 999 UNP A8EVM5 EXPRESSION TAG SEQADV 8HA1 SER A 1000 UNP A8EVM5 EXPRESSION TAG SEQADV 8HA1 LYS A 1049 UNP A8EVM5 ASN 49 ENGINEERED MUTATION SEQADV 8HA1 GLY A 1176 UNP A8EVM5 LEU 176 ENGINEERED MUTATION SEQRES 1 A 271 GLY SER GLY SER MET TYR LEU ARG ILE THR ASN ILE VAL SEQRES 2 A 271 GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU ILE SEQRES 3 A 271 VAL LEU ASN GLY ILE THR MET GLY LEU GLU THR SER LYS SEQRES 4 A 271 THR PHE MET GLN SER PHE GLY VAL TYR THR THR LEU PHE SEQRES 5 A 271 LYS GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE ILE SEQRES 6 A 271 LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS ASP SEQRES 7 A 271 PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SER SEQRES 8 A 271 LEU VAL PRO THR SER SER GLY PHE GLU ILE LEU ARG VAL SEQRES 9 A 271 LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA VAL SEQRES 10 A 271 PRO GLN MET ARG LYS ILE VAL SER ALA LEU ILE SER VAL SEQRES 11 A 271 ILE PRO GLY MET LEU SER VAL ILE ALA LEU MET THR LEU SEQRES 12 A 271 PHE PHE TYR ILE PHE ALA ILE MET ALA THR GLN LEU PHE SEQRES 13 A 271 GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY GLU SEQRES 14 A 271 SER PHE TYR THR LEU PHE GLN VAL MET THR GLY GLU SER SEQRES 15 A 271 TRP SER MET GLY ILE VAL ARG PRO LEU MET GLU VAL TYR SEQRES 16 A 271 PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE VAL SEQRES 17 A 271 VAL THR PHE VAL MET ILE ASN LEU VAL VAL ALA ILE ILE SEQRES 18 A 271 VAL ASP ALA MET ALA ILE LEU ASN GLN LYS GLU GLU GLN SEQRES 19 A 271 HIS ILE ILE ASP GLU VAL GLN SER HIS GLU ASP ASN ILE SEQRES 20 A 271 ASN ASN GLU ILE ILE LYS LEU ARG GLU GLU ILE VAL GLU SEQRES 21 A 271 LEU LYS GLU LEU ILE LYS THR SER LEU LYS ASN HET LMT A1301 35 HET LMT A1302 35 HET 1N7 A1303 31 HET PX4 A1304 46 HET PX4 A1305 44 HET PX4 A1306 46 HET PX4 A1307 46 HET PX4 A1308 46 HET PX4 A1309 46 HET PX4 A1310 46 HET PX4 A1311 46 HET NA A1312 1 HET NA A1313 1 HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM 1N7 CHAPSO HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETNAM NA SODIUM ION HETSYN 1N7 2-HYDROXY-N,N-DIMETHYL-3-SULFO-N-(3-{[(3BETA,5BETA, HETSYN 2 1N7 7BETA,12BETA)-3,7,12-TRIHYDROXY-24-OXOCHOLAN-24- HETSYN 3 1N7 YL]AMINO}PROPYL)PROPAN-1-AMINIUM FORMUL 2 LMT 2(C24 H46 O11) FORMUL 4 1N7 C32 H59 N2 O8 S 1+ FORMUL 5 PX4 8(C36 H73 N O8 P 1+) FORMUL 13 NA 2(NA 1+) FORMUL 15 HOH *13(H2 O) HELIX 1 AA2 SER A 1011 GLU A 1032 1 22 HELIX 2 AA3 SER A 1034 HIS A 1067 1 34 HELIX 3 AA4 HIS A 1067 PHE A 1072 1 6 HELIX 4 AA5 ASP A 1074 VAL A 1089 1 16 HELIX 5 AA6 VAL A 1100 LEU A 1106 5 7 HELIX 6 AA7 PHE A 1107 VAL A 1113 1 7 HELIX 7 AA8 VAL A 1113 SER A 1125 1 13 HELIX 8 AA9 VAL A 1126 GLY A 1129 5 4 HELIX 9 AB1 MET A 1130 GLY A 1153 1 24 HELIX 10 AB2 PHE A 1156 GLY A 1161 1 6 HELIX 11 AB3 THR A 1162 GLY A 1176 1 15 HELIX 12 AB4 ILE A 1183 GLU A 1189 1 7 HELIX 13 AB5 ALA A 1194 GLN A 1226 1 33 CRYST1 126.910 126.910 201.780 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007880 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004956 0.00000