HEADER MEMBRANE PROTEIN 26-OCT-22 8HA2 TITLE CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB N49K/L176G TITLE 2 MUTANT IN CALCIUM ION CONDITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VOLTAGE-GATED SODIUM CHANNEL; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIARCOBACTER BUTZLERI; SOURCE 3 ORGANISM_TAXID: 28197; SOURCE 4 GENE: ABU_1752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ION CHANNEL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE,Y.ODA REVDAT 2 29-MAY-24 8HA2 1 REMARK REVDAT 1 26-JUL-23 8HA2 0 JRNL AUTH K.IRIE,Y.ODA,T.SUMIKAMA,A.OSHIMA,Y.FUJIYOSHI JRNL TITL THE STRUCTURAL BASIS OF DIVALENT CATION BLOCK IN A JRNL TITL 2 TETRAMERIC PROKARYOTIC SODIUM CHANNEL. JRNL REF NAT COMMUN V. 14 4236 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37454189 JRNL DOI 10.1038/S41467-023-39987-0 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 11813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9600 - 8.8900 1.00 677 35 0.3147 0.3288 REMARK 3 2 8.8800 - 7.0800 1.00 625 36 0.2686 0.3263 REMARK 3 3 7.0800 - 6.2000 1.00 624 35 0.3370 0.3695 REMARK 3 4 6.2000 - 5.6300 1.00 610 26 0.3145 0.3904 REMARK 3 5 5.6300 - 5.2300 1.00 613 34 0.2871 0.2946 REMARK 3 6 5.2300 - 4.9300 1.00 610 33 0.2454 0.2752 REMARK 3 7 4.9200 - 4.6800 1.00 591 37 0.2217 0.2343 REMARK 3 8 4.6800 - 4.4800 1.00 599 34 0.2179 0.2159 REMARK 3 9 4.4800 - 4.3000 1.00 604 24 0.2427 0.2416 REMARK 3 10 4.3000 - 4.1600 1.00 596 37 0.2293 0.2752 REMARK 3 11 4.1600 - 4.0300 1.00 601 34 0.2029 0.1973 REMARK 3 12 4.0300 - 3.9100 1.00 602 21 0.2141 0.2241 REMARK 3 13 3.9100 - 3.8100 1.00 589 29 0.2371 0.2821 REMARK 3 14 3.8100 - 3.7200 1.00 614 24 0.2484 0.2704 REMARK 3 15 3.7200 - 3.6300 1.00 586 22 0.2597 0.3414 REMARK 3 16 3.6300 - 3.5500 1.00 596 35 0.2266 0.2185 REMARK 3 17 3.5500 - 3.4800 1.00 591 30 0.2502 0.2183 REMARK 3 18 3.4800 - 3.4200 0.77 464 23 0.2568 0.3138 REMARK 3 19 3.4200 - 3.3600 0.47 272 14 0.3046 0.1958 REMARK 3 20 3.3600 - 3.3000 0.30 178 8 0.3349 0.5280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.338 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.048 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2294 REMARK 3 ANGLE : 1.311 3056 REMARK 3 CHIRALITY : 0.063 347 REMARK 3 PLANARITY : 0.006 309 REMARK 3 DIHEDRAL : 22.207 971 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 999 THROUGH 1011 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6878 -28.2197 45.5244 REMARK 3 T TENSOR REMARK 3 T11: 1.9232 T22: 2.0051 REMARK 3 T33: 1.1413 T12: 1.0501 REMARK 3 T13: -0.3895 T23: 0.6622 REMARK 3 L TENSOR REMARK 3 L11: 2.1303 L22: 8.2898 REMARK 3 L33: 6.4199 L12: -0.6035 REMARK 3 L13: 3.0015 L23: -5.0636 REMARK 3 S TENSOR REMARK 3 S11: 0.4001 S12: -0.1446 S13: -0.7755 REMARK 3 S21: 0.2401 S22: -0.3264 S23: -0.7665 REMARK 3 S31: 0.7802 S32: 0.5895 S33: -0.0759 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1012 THROUGH 1066 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9092 -18.8400 23.9375 REMARK 3 T TENSOR REMARK 3 T11: 0.9163 T22: 1.2431 REMARK 3 T33: 1.0660 T12: 0.5308 REMARK 3 T13: -0.2245 T23: 0.1280 REMARK 3 L TENSOR REMARK 3 L11: 5.4884 L22: 4.9035 REMARK 3 L33: 3.6782 L12: -1.8341 REMARK 3 L13: 3.9313 L23: -3.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.2542 S12: 0.6865 S13: 0.4208 REMARK 3 S21: 0.5072 S22: -0.0010 S23: -1.2926 REMARK 3 S31: 0.5185 S32: 1.8303 S33: 0.4056 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1067 THROUGH 1127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9229 -22.3012 30.7830 REMARK 3 T TENSOR REMARK 3 T11: 1.2536 T22: 0.9011 REMARK 3 T33: 1.0362 T12: 0.4331 REMARK 3 T13: -0.2278 T23: 0.2272 REMARK 3 L TENSOR REMARK 3 L11: 3.8248 L22: 2.8858 REMARK 3 L33: 3.4731 L12: -1.0383 REMARK 3 L13: 2.3296 L23: -2.9202 REMARK 3 S TENSOR REMARK 3 S11: -0.3549 S12: -0.4033 S13: -0.4924 REMARK 3 S21: -0.1014 S22: 0.3585 S23: 0.1131 REMARK 3 S31: 1.9734 S32: 1.5901 S33: 0.0372 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1128 THROUGH 1152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7684 -18.9446 23.7062 REMARK 3 T TENSOR REMARK 3 T11: 0.6405 T22: 0.3416 REMARK 3 T33: 0.5340 T12: -0.1154 REMARK 3 T13: 0.1530 T23: 0.0944 REMARK 3 L TENSOR REMARK 3 L11: 1.4734 L22: 2.3243 REMARK 3 L33: 8.9016 L12: -1.6439 REMARK 3 L13: 0.9462 L23: -3.0421 REMARK 3 S TENSOR REMARK 3 S11: -0.0979 S12: -0.2073 S13: -0.4305 REMARK 3 S21: 0.3642 S22: 0.1761 S23: 0.1557 REMARK 3 S31: 0.9782 S32: -0.5628 S33: -0.1137 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1153 THROUGH 1162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7696 -17.2456 5.8691 REMARK 3 T TENSOR REMARK 3 T11: 0.9316 T22: 0.4276 REMARK 3 T33: 0.3800 T12: -0.2110 REMARK 3 T13: 0.1892 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 9.3514 L22: 9.8254 REMARK 3 L33: 9.5832 L12: -3.6110 REMARK 3 L13: 3.9916 L23: -2.2502 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 1.1972 S13: -0.6998 REMARK 3 S21: -1.6058 S22: 0.3505 S23: -0.4280 REMARK 3 S31: 1.2811 S32: -0.2138 S33: -0.3108 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1163 THROUGH 1183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5711 -10.8647 14.6173 REMARK 3 T TENSOR REMARK 3 T11: 0.4271 T22: 0.3135 REMARK 3 T33: 0.5178 T12: -0.1122 REMARK 3 T13: 0.1386 T23: 0.0771 REMARK 3 L TENSOR REMARK 3 L11: 6.0202 L22: 1.0236 REMARK 3 L33: 6.4187 L12: -2.4487 REMARK 3 L13: 0.8608 L23: 0.1260 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: -0.0363 S13: -0.4461 REMARK 3 S21: 0.1615 S22: -0.0217 S23: 0.0514 REMARK 3 S31: 0.4025 S32: 0.3483 S33: 0.2298 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1184 THROUGH 1220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9546 -7.7609 22.0154 REMARK 3 T TENSOR REMARK 3 T11: 0.3024 T22: 0.4431 REMARK 3 T33: 0.3484 T12: -0.1384 REMARK 3 T13: 0.0985 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.4447 L22: 4.5220 REMARK 3 L33: 9.7417 L12: 0.5176 REMARK 3 L13: -1.0759 L23: 1.2244 REMARK 3 S TENSOR REMARK 3 S11: 0.0806 S12: -0.6048 S13: -0.1940 REMARK 3 S21: 0.4493 S22: -0.0512 S23: -0.0359 REMARK 3 S31: 0.6519 S32: -0.6570 S33: -0.0748 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300033129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12718 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 40.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YUC REMARK 200 REMARK 200 REMARK: PYRAMIDAL SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9%-11% PEG MME 2000, 100 MM SODIUM REMARK 280 CHLORIDE, 100 MM MAGNESIUM NITRATE, 25MM CADMIUM NITRATE, 100 MM REMARK 280 TRIS-HCL, PH 8.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.56500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.27500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.56500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 100.27500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.56500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 100.27500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.56500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 100.27500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.56500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.27500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.56500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 100.27500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.56500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.27500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.56500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.27500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 52240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -276.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1312 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1411 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 997 REMARK 465 SER A 998 REMARK 465 SER A 1092 REMARK 465 SER A 1093 REMARK 465 GLY A 1094 REMARK 465 PHE A 1095 REMARK 465 MET A 1221 REMARK 465 ALA A 1222 REMARK 465 ILE A 1223 REMARK 465 LEU A 1224 REMARK 465 ASN A 1225 REMARK 465 GLN A 1226 REMARK 465 LYS A 1227 REMARK 465 GLU A 1228 REMARK 465 GLU A 1229 REMARK 465 GLN A 1230 REMARK 465 HIS A 1231 REMARK 465 ILE A 1232 REMARK 465 ILE A 1233 REMARK 465 ASP A 1234 REMARK 465 GLU A 1235 REMARK 465 VAL A 1236 REMARK 465 GLN A 1237 REMARK 465 SER A 1238 REMARK 465 HIS A 1239 REMARK 465 GLU A 1240 REMARK 465 ASP A 1241 REMARK 465 ASN A 1242 REMARK 465 ILE A 1243 REMARK 465 ASN A 1244 REMARK 465 ASN A 1245 REMARK 465 GLU A 1246 REMARK 465 ILE A 1247 REMARK 465 ILE A 1248 REMARK 465 LYS A 1249 REMARK 465 LEU A 1250 REMARK 465 ARG A 1251 REMARK 465 GLU A 1252 REMARK 465 GLU A 1253 REMARK 465 ILE A 1254 REMARK 465 VAL A 1255 REMARK 465 GLU A 1256 REMARK 465 LEU A 1257 REMARK 465 LYS A 1258 REMARK 465 GLU A 1259 REMARK 465 LEU A 1260 REMARK 465 ILE A 1261 REMARK 465 LYS A 1262 REMARK 465 THR A 1263 REMARK 465 SER A 1264 REMARK 465 LEU A 1265 REMARK 465 LYS A 1266 REMARK 465 ASN A 1267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1155 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 1165 C3 PX4 A 1304 3555 1.38 REMARK 500 C10 LMT A 1301 C22 PX4 A 1304 3555 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1162 -169.75 -113.15 REMARK 500 SER A1180 -71.68 -106.72 REMARK 500 ILE A1183 -67.80 -121.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1410 DISTANCE = 8.55 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1N7 A 1303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1313 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A1175 O REMARK 620 2 LMT A1301 O6' 94.1 REMARK 620 N 1 DBREF 8HA2 A 1001 1267 UNP A8EVM5 A8EVM5_ALIB4 1 267 SEQADV 8HA2 GLY A 997 UNP A8EVM5 EXPRESSION TAG SEQADV 8HA2 SER A 998 UNP A8EVM5 EXPRESSION TAG SEQADV 8HA2 GLY A 999 UNP A8EVM5 EXPRESSION TAG SEQADV 8HA2 SER A 1000 UNP A8EVM5 EXPRESSION TAG SEQADV 8HA2 LYS A 1049 UNP A8EVM5 ASN 49 ENGINEERED MUTATION SEQADV 8HA2 GLY A 1176 UNP A8EVM5 LEU 176 ENGINEERED MUTATION SEQRES 1 A 271 GLY SER GLY SER MET TYR LEU ARG ILE THR ASN ILE VAL SEQRES 2 A 271 GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU ILE SEQRES 3 A 271 VAL LEU ASN GLY ILE THR MET GLY LEU GLU THR SER LYS SEQRES 4 A 271 THR PHE MET GLN SER PHE GLY VAL TYR THR THR LEU PHE SEQRES 5 A 271 LYS GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE ILE SEQRES 6 A 271 LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS ASP SEQRES 7 A 271 PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SER SEQRES 8 A 271 LEU VAL PRO THR SER SER GLY PHE GLU ILE LEU ARG VAL SEQRES 9 A 271 LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA VAL SEQRES 10 A 271 PRO GLN MET ARG LYS ILE VAL SER ALA LEU ILE SER VAL SEQRES 11 A 271 ILE PRO GLY MET LEU SER VAL ILE ALA LEU MET THR LEU SEQRES 12 A 271 PHE PHE TYR ILE PHE ALA ILE MET ALA THR GLN LEU PHE SEQRES 13 A 271 GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY GLU SEQRES 14 A 271 SER PHE TYR THR LEU PHE GLN VAL MET THR GLY GLU SER SEQRES 15 A 271 TRP SER MET GLY ILE VAL ARG PRO LEU MET GLU VAL TYR SEQRES 16 A 271 PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE VAL SEQRES 17 A 271 VAL THR PHE VAL MET ILE ASN LEU VAL VAL ALA ILE ILE SEQRES 18 A 271 VAL ASP ALA MET ALA ILE LEU ASN GLN LYS GLU GLU GLN SEQRES 19 A 271 HIS ILE ILE ASP GLU VAL GLN SER HIS GLU ASP ASN ILE SEQRES 20 A 271 ASN ASN GLU ILE ILE LYS LEU ARG GLU GLU ILE VAL GLU SEQRES 21 A 271 LEU LYS GLU LEU ILE LYS THR SER LEU LYS ASN HET LMT A1301 35 HET LMT A1302 35 HET 1N7 A1303 32 HET PX4 A1304 46 HET PX4 A1305 46 HET PX4 A1306 46 HET PX4 A1307 46 HET PX4 A1308 46 HET PX4 A1309 46 HET PX4 A1310 46 HET PX4 A1311 46 HET CA A1312 1 HET CA A1313 1 HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM 1N7 CHAPSO HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETNAM CA CALCIUM ION HETSYN 1N7 2-HYDROXY-N,N-DIMETHYL-3-SULFO-N-(3-{[(3BETA,5BETA, HETSYN 2 1N7 7BETA,12BETA)-3,7,12-TRIHYDROXY-24-OXOCHOLAN-24- HETSYN 3 1N7 YL]AMINO}PROPYL)PROPAN-1-AMINIUM FORMUL 2 LMT 2(C24 H46 O11) FORMUL 4 1N7 C32 H59 N2 O8 S 1+ FORMUL 5 PX4 8(C36 H73 N O8 P 1+) FORMUL 13 CA 2(CA 2+) FORMUL 15 HOH *11(H2 O) HELIX 1 AA1 GLY A 999 GLU A 1010 1 12 HELIX 2 AA2 SER A 1011 GLU A 1032 1 22 HELIX 3 AA3 SER A 1034 HIS A 1067 1 34 HELIX 4 AA4 HIS A 1067 ASP A 1074 1 8 HELIX 5 AA5 ASP A 1074 SER A 1087 1 14 HELIX 6 AA6 ILE A 1097 VAL A 1103 1 7 HELIX 7 AA7 LEU A 1104 LEU A 1106 5 3 HELIX 8 AA8 PHE A 1107 VAL A 1113 1 7 HELIX 9 AA9 VAL A 1113 VAL A 1126 1 14 HELIX 10 AB1 ILE A 1127 GLY A 1129 5 3 HELIX 11 AB2 MET A 1130 GLY A 1153 1 24 HELIX 12 AB3 PHE A 1156 GLY A 1161 1 6 HELIX 13 AB4 THR A 1162 GLY A 1176 1 15 HELIX 14 AB5 ILE A 1183 GLU A 1189 1 7 HELIX 15 AB6 ALA A 1194 ASP A 1219 1 26 LINK O THR A1175 CA CA A1313 1555 3555 2.67 LINK O6' LMT A1301 CA CA A1313 1555 3555 2.69 CRYST1 127.130 127.130 200.550 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004986 0.00000