HEADER VIRAL PROTEIN/IMMUNE SYSTEM 01-NOV-22 8HC7 TITLE SARS-COV-2 OMICRON BA.1 SPIKE TRIMER (6P) COMPLEX WITH YB9-258 FAB, TITLE 2 FOCUSED REFINEMENT OF RBD-DIMER REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HEAVY CHAIN VARIABLE REGION OF YB9-258; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: LIGHT CHAIN VARIABLE REGION OF YB9-258; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 12 2; SOURCE 13 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 14 ORGANISM_TAXID: 2697049; SOURCE 15 GENE: S, 2; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_TAXID: 9606; SOURCE 28 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 30 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS SPIKE PROTEIN, RBD, ANTIBODY, FAB, VIRAL PROTEIN, VIRAL PROTEIN- KEYWDS 2 IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR B.LIU,X.GAO,Q.CHEN,Z.LI,M.SU,J.HE,X.XIONG REVDAT 2 03-MAY-23 8HC7 1 JRNL REVDAT 1 25-JAN-23 8HC7 0 JRNL AUTH H.YU,B.LIU,Y.ZHANG,X.GAO,Q.WANG,H.XIANG,X.PENG,C.XIE,Y.WANG, JRNL AUTH 2 P.HU,J.SHI,Q.SHI,P.ZHENG,C.FENG,G.TANG,X.LIU,L.GUO,X.LIN, JRNL AUTH 3 J.LI,C.LIU,Y.HUANG,N.YANG,Q.CHEN,Z.LI,M.SU,Q.YAN,R.PEI, JRNL AUTH 4 X.CHEN,L.LIU,F.HU,D.LIANG,B.KE,C.KE,F.LI,J.HE,M.WANG,L.CHEN, JRNL AUTH 5 X.XIONG,X.TANG JRNL TITL SOMATICALLY HYPERMUTATED ANTIBODIES ISOLATED FROM SARS-COV-2 JRNL TITL 2 DELTA INFECTED PATIENTS CROSS-NEUTRALIZE HETEROLOGOUS JRNL TITL 3 VARIANTS. JRNL REF NAT COMMUN V. 14 1058 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36828833 JRNL DOI 10.1038/S41467-023-36761-0 REMARK 2 REMARK 2 RESOLUTION. 4.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.540 REMARK 3 NUMBER OF PARTICLES : 287435 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8HC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033244. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 OMICRON BA.1 SPIKE REMARK 245 TRIMER WITH IN COMPLEX WITH YB9- REMARK 245 258 FAB, FOCUSED REFINEMENT OF REMARK 245 2 RBD REGION; SARS-COV_2 REMARK 245 OMICRON BA.1 SPIKE PROTEIN; YB9- REMARK 245 258 FAB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 71 REMARK 465 GLY C 72 REMARK 465 THR C 73 REMARK 465 ASN C 74 REMARK 465 GLY C 75 REMARK 465 THR C 76 REMARK 465 HIS C 146 REMARK 465 LYS C 147 REMARK 465 ASN C 148 REMARK 465 ASN C 149 REMARK 465 LYS C 150 REMARK 465 SER C 151 REMARK 465 TRP C 152 REMARK 465 MET C 177 REMARK 465 ASP C 178 REMARK 465 LEU C 179 REMARK 465 GLU C 180 REMARK 465 GLY C 181 REMARK 465 LYS C 182 REMARK 465 GLN C 183 REMARK 465 GLY C 184 REMARK 465 ILE C 210A REMARK 465 VAL C 210B REMARK 465 ARG C 210C REMARK 465 GLU C 210D REMARK 465 PRO C 210E REMARK 465 GLU C 210F REMARK 465 TYR C 248 REMARK 465 LEU C 249 REMARK 465 THR C 250 REMARK 465 PRO C 251 REMARK 465 GLY C 252 REMARK 465 ASP C 253 REMARK 465 SER C 254 REMARK 465 SER C 255 REMARK 465 SER C 256 REMARK 465 ASP C 290 REMARK 465 CYS C 291 REMARK 465 ALA C 292 REMARK 465 LEU C 293 REMARK 465 ASP C 294 REMARK 465 PRO C 295 REMARK 465 LEU C 296 REMARK 465 SER C 297 REMARK 465 GLU C 298 REMARK 465 THR C 299 REMARK 465 LYS C 300 REMARK 465 CYS C 301 REMARK 465 THR C 302 REMARK 465 LEU C 303 REMARK 465 LYS C 304 REMARK 465 SER C 305 REMARK 465 PHE C 306 REMARK 465 THR C 307 REMARK 465 VAL C 308 REMARK 465 GLU C 309 REMARK 465 LYS C 310 REMARK 465 GLY C 311 REMARK 465 ILE C 312 REMARK 465 TYR C 313 REMARK 465 GLN C 314 REMARK 465 THR C 315 REMARK 465 SER C 316 REMARK 465 ASN C 317 REMARK 465 PHE C 318 REMARK 465 ARG C 319 REMARK 465 VAL C 320 REMARK 465 GLN C 321 REMARK 465 PRO C 322 REMARK 465 THR C 323 REMARK 465 GLU C 324 REMARK 465 SER C 325 REMARK 465 ILE C 326 REMARK 465 VAL C 327 REMARK 465 ARG C 328 REMARK 465 PHE C 329 REMARK 465 PRO C 330 REMARK 465 ASN C 331 REMARK 465 ILE C 332 REMARK 465 THR C 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 132 59.45 -94.85 REMARK 500 CYS C 136 -169.45 -77.43 REMARK 500 CYS C 361 -168.49 -160.69 REMARK 500 ASP C 428 35.14 -98.65 REMARK 500 HIS C 505 54.42 -92.22 REMARK 500 LEU A 371 -165.18 -79.08 REMARK 500 PHE A 486 -30.49 -130.71 REMARK 500 GLN A 580 -66.42 61.90 REMARK 500 VAL H 48 -65.71 -122.83 REMARK 500 ASP H 101 -0.62 67.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34654 RELATED DB: EMDB REMARK 900 SARS-COV-2 OMICRON BA.1 SPIKE TRIMER WITH IN COMPLEX WITH YB9-258 REMARK 900 FAB, FOCUSED REFINEMENT OF 2 RBD REGION DBREF 8HC7 C 14 526 UNP P0DTC2 SPIKE_SARS2 14 526 DBREF 8HC7 A 322 588 UNP P0DTC2 SPIKE_SARS2 322 588 DBREF 8HC7 H 1 115 PDB 8HC7 8HC7 1 115 DBREF 8HC7 L 1 107 PDB 8HC7 8HC7 1 107 SEQADV 8HC7 VAL C 67 UNP P0DTC2 ALA 67 VARIANT SEQADV 8HC7 C UNP P0DTC2 HIS 69 DELETION SEQADV 8HC7 C UNP P0DTC2 VAL 70 DELETION SEQADV 8HC7 ILE C 95 UNP P0DTC2 THR 95 VARIANT SEQADV 8HC7 C UNP P0DTC2 GLY 142 DELETION SEQADV 8HC7 C UNP P0DTC2 VAL 143 DELETION SEQADV 8HC7 C UNP P0DTC2 TYR 144 DELETION SEQADV 8HC7 ASP C 142 UNP P0DTC2 TYR 145 VARIANT SEQADV 8HC7 ILE C 210A UNP P0DTC2 INSERTION SEQADV 8HC7 VAL C 210B UNP P0DTC2 INSERTION SEQADV 8HC7 ARG C 210C UNP P0DTC2 ASN 211 VARIANT SEQADV 8HC7 GLU C 210D UNP P0DTC2 LEU 212 VARIANT SEQADV 8HC7 PRO C 210E UNP P0DTC2 VAL 213 VARIANT SEQADV 8HC7 GLU C 210F UNP P0DTC2 ARG 214 VARIANT SEQADV 8HC7 ASP C 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8HC7 LEU C 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8HC7 PRO C 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8HC7 PHE C 375 UNP P0DTC2 SER 375 VARIANT SEQADV 8HC7 ASN C 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8HC7 LYS C 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8HC7 SER C 446 UNP P0DTC2 GLY 446 VARIANT SEQADV 8HC7 ASN C 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8HC7 LYS C 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8HC7 ALA C 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8HC7 ARG C 493 UNP P0DTC2 GLN 493 VARIANT SEQADV 8HC7 SER C 496 UNP P0DTC2 GLY 496 VARIANT SEQADV 8HC7 ARG C 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8HC7 TYR C 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8HC7 HIS C 505 UNP P0DTC2 TYR 505 VARIANT SEQADV 8HC7 ASP A 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8HC7 LEU A 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8HC7 PRO A 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8HC7 PHE A 375 UNP P0DTC2 SER 375 VARIANT SEQADV 8HC7 ASN A 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8HC7 LYS A 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8HC7 SER A 446 UNP P0DTC2 GLY 446 VARIANT SEQADV 8HC7 ASN A 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8HC7 LYS A 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8HC7 ALA A 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8HC7 ARG A 493 UNP P0DTC2 GLN 493 VARIANT SEQADV 8HC7 SER A 496 UNP P0DTC2 GLY 496 VARIANT SEQADV 8HC7 ARG A 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8HC7 TYR A 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8HC7 HIS A 505 UNP P0DTC2 TYR 505 VARIANT SEQADV 8HC7 LYS A 547 UNP P0DTC2 THR 547 VARIANT SEQRES 1 C 510 GLN CYS VAL ASN LEU THR THR ARG THR GLN LEU PRO PRO SEQRES 2 C 510 ALA TYR THR ASN SER PHE THR ARG GLY VAL TYR TYR PRO SEQRES 3 C 510 ASP LYS VAL PHE ARG SER SER VAL LEU HIS SER THR GLN SEQRES 4 C 510 ASP LEU PHE LEU PRO PHE PHE SER ASN VAL THR TRP PHE SEQRES 5 C 510 HIS VAL ILE SER GLY THR ASN GLY THR LYS ARG PHE ASP SEQRES 6 C 510 ASN PRO VAL LEU PRO PHE ASN ASP GLY VAL TYR PHE ALA SEQRES 7 C 510 SER ILE GLU LYS SER ASN ILE ILE ARG GLY TRP ILE PHE SEQRES 8 C 510 GLY THR THR LEU ASP SER LYS THR GLN SER LEU LEU ILE SEQRES 9 C 510 VAL ASN ASN ALA THR ASN VAL VAL ILE LYS VAL CYS GLU SEQRES 10 C 510 PHE GLN PHE CYS ASN ASP PRO PHE LEU ASP HIS LYS ASN SEQRES 11 C 510 ASN LYS SER TRP MET GLU SER GLU PHE ARG VAL TYR SER SEQRES 12 C 510 SER ALA ASN ASN CYS THR PHE GLU TYR VAL SER GLN PRO SEQRES 13 C 510 PHE LEU MET ASP LEU GLU GLY LYS GLN GLY ASN PHE LYS SEQRES 14 C 510 ASN LEU ARG GLU PHE VAL PHE LYS ASN ILE ASP GLY TYR SEQRES 15 C 510 PHE LYS ILE TYR SER LYS HIS THR PRO ILE ILE VAL ARG SEQRES 16 C 510 GLU PRO GLU ASP LEU PRO GLN GLY PHE SER ALA LEU GLU SEQRES 17 C 510 PRO LEU VAL ASP LEU PRO ILE GLY ILE ASN ILE THR ARG SEQRES 18 C 510 PHE GLN THR LEU LEU ALA LEU HIS ARG SER TYR LEU THR SEQRES 19 C 510 PRO GLY ASP SER SER SER GLY TRP THR ALA GLY ALA ALA SEQRES 20 C 510 ALA TYR TYR VAL GLY TYR LEU GLN PRO ARG THR PHE LEU SEQRES 21 C 510 LEU LYS TYR ASN GLU ASN GLY THR ILE THR ASP ALA VAL SEQRES 22 C 510 ASP CYS ALA LEU ASP PRO LEU SER GLU THR LYS CYS THR SEQRES 23 C 510 LEU LYS SER PHE THR VAL GLU LYS GLY ILE TYR GLN THR SEQRES 24 C 510 SER ASN PHE ARG VAL GLN PRO THR GLU SER ILE VAL ARG SEQRES 25 C 510 PHE PRO ASN ILE THR ASN LEU CYS PRO PHE ASP GLU VAL SEQRES 26 C 510 PHE ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN SEQRES 27 C 510 ARG LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL SEQRES 28 C 510 LEU TYR ASN LEU ALA PRO PHE PHE THR PHE LYS CYS TYR SEQRES 29 C 510 GLY VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR SEQRES 30 C 510 ASN VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU SEQRES 31 C 510 VAL ARG GLN ILE ALA PRO GLY GLN THR GLY ASN ILE ALA SEQRES 32 C 510 ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS SEQRES 33 C 510 VAL ILE ALA TRP ASN SER ASN LYS LEU ASP SER LYS VAL SEQRES 34 C 510 SER GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SEQRES 35 C 510 SER ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU SEQRES 36 C 510 ILE TYR GLN ALA GLY ASN LYS PRO CYS ASN GLY VAL ALA SEQRES 37 C 510 GLY PHE ASN CYS TYR PHE PRO LEU ARG SER TYR SER PHE SEQRES 38 C 510 ARG PRO THR TYR GLY VAL GLY HIS GLN PRO TYR ARG VAL SEQRES 39 C 510 VAL VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR SEQRES 40 C 510 VAL CYS GLY SEQRES 1 A 267 PRO THR GLU SER ILE VAL ARG PHE PRO ASN ILE THR ASN SEQRES 2 A 267 LEU CYS PRO PHE ASP GLU VAL PHE ASN ALA THR ARG PHE SEQRES 3 A 267 ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SER ASN SEQRES 4 A 267 CYS VAL ALA ASP TYR SER VAL LEU TYR ASN LEU ALA PRO SEQRES 5 A 267 PHE PHE THR PHE LYS CYS TYR GLY VAL SER PRO THR LYS SEQRES 6 A 267 LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SER SEQRES 7 A 267 PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE ALA PRO SEQRES 8 A 267 GLY GLN THR GLY ASN ILE ALA ASP TYR ASN TYR LYS LEU SEQRES 9 A 267 PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SER SEQRES 10 A 267 ASN LYS LEU ASP SER LYS VAL SER GLY ASN TYR ASN TYR SEQRES 11 A 267 LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS PRO PHE SEQRES 12 A 267 GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA GLY ASN SEQRES 13 A 267 LYS PRO CYS ASN GLY VAL ALA GLY PHE ASN CYS TYR PHE SEQRES 14 A 267 PRO LEU ARG SER TYR SER PHE ARG PRO THR TYR GLY VAL SEQRES 15 A 267 GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SER PHE GLU SEQRES 16 A 267 LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO LYS LYS SEQRES 17 A 267 SER THR ASN LEU VAL LYS ASN LYS CYS VAL ASN PHE ASN SEQRES 18 A 267 PHE ASN GLY LEU LYS GLY THR GLY VAL LEU THR GLU SER SEQRES 19 A 267 ASN LYS LYS PHE LEU PRO PHE GLN GLN PHE GLY ARG ASP SEQRES 20 A 267 ILE ALA ASP THR THR ASP ALA VAL ARG ASP PRO GLN THR SEQRES 21 A 267 LEU GLU ILE LEU ASP ILE THR SEQRES 1 H 115 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 115 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 115 LEU THR VAL SER SER ASN TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 115 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL LEU TYR SEQRES 5 H 115 ALA GLY GLY SER ALA PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 115 ARG PHE THR ILE SER ARG ASN ASN SER LYS ASN THR LEU SEQRES 7 H 115 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 115 ILE TYR TYR CYS ALA ARG GLY LEU GLY ASP TYR LEU ASP SEQRES 9 H 115 SER TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 1 L 107 ASP ILE GLN MET THR GLN SER PRO SER SER VAL SER ALA SEQRES 2 L 107 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 107 GLN GLY ILE GLY SER TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 107 PRO GLY LYS ALA PRO GLN LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 107 THR LEU GLN SER GLY VAL PRO PRO ARG PHE SER GLY SER SEQRES 6 L 107 GLY SER GLY THR ASP PHE THR LEU THR ILE THR SER LEU SEQRES 7 L 107 GLN PRO GLU ASP PHE ALA SER TYR TYR CYS GLN GLN ALA SEQRES 8 L 107 ASN SER VAL LEU ALA LEU THR PHE GLY GLY GLY THR LYS SEQRES 9 L 107 VAL GLU ILE HET NAG C1301 14 HET NAG C1302 14 HET NAG C1303 14 HET NAG C1304 14 HET NAG C1305 14 HET NAG C1306 14 HET NAG A 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 7(C8 H15 N O6) HELIX 1 AA1 PHE C 338 ASN C 343 1 6 HELIX 2 AA2 TYR C 365 ASN C 370 1 6 HELIX 3 AA3 THR C 385 ASP C 389 5 5 HELIX 4 AA4 GLY C 404 ILE C 410 1 7 HELIX 5 AA5 GLY C 416 ASN C 422 1 7 HELIX 6 AA6 PRO A 337 PHE A 342 1 6 HELIX 7 AA7 ASP A 364 ASN A 370 5 7 HELIX 8 AA8 LYS A 386 CYS A 391 1 6 HELIX 9 AA9 GLU A 406 ALA A 411 5 6 HELIX 10 AB1 ASN A 417 ASN A 422 1 6 SHEET 1 AA1 6 ALA C 27 ASN C 30 0 SHEET 2 AA1 6 ASN C 61 VAL C 67 -1 O TRP C 64 N ALA C 27 SHEET 3 AA1 6 ALA C 263 TYR C 269 -1 O ALA C 263 N VAL C 67 SHEET 4 AA1 6 VAL C 90 GLU C 96 -1 N ALA C 93 O TYR C 266 SHEET 5 AA1 6 ASN C 188 ILE C 197 -1 O PHE C 192 N PHE C 92 SHEET 6 AA1 6 HIS C 207 PRO C 209 -1 O THR C 208 N LEU C 189 SHEET 1 AA2 7 ALA C 27 ASN C 30 0 SHEET 2 AA2 7 ASN C 61 VAL C 67 -1 O TRP C 64 N ALA C 27 SHEET 3 AA2 7 ALA C 263 TYR C 269 -1 O ALA C 263 N VAL C 67 SHEET 4 AA2 7 VAL C 90 GLU C 96 -1 N ALA C 93 O TYR C 266 SHEET 5 AA2 7 ASN C 188 ILE C 197 -1 O PHE C 192 N PHE C 92 SHEET 6 AA2 7 TYR C 200 TYR C 204 -1 O LYS C 202 N LYS C 195 SHEET 7 AA2 7 PRO C 225 LEU C 229 -1 O LEU C 229 N PHE C 201 SHEET 1 AA3 3 HIS C 49 THR C 51 0 SHEET 2 AA3 3 PHE C 275 LYS C 278 -1 O LEU C 277 N HIS C 49 SHEET 3 AA3 3 ASP C 287 VAL C 289 -1 O VAL C 289 N LEU C 276 SHEET 1 AA4 2 LEU C 54 PHE C 55 0 SHEET 2 AA4 2 GLN C 271 PRO C 272 -1 O GLN C 271 N PHE C 55 SHEET 1 AA5 3 VAL C 83 PRO C 85 0 SHEET 2 AA5 3 ARG C 237 THR C 240 -1 O PHE C 238 N LEU C 84 SHEET 3 AA5 3 TRP C 104 GLY C 107 -1 N ILE C 105 O GLN C 239 SHEET 1 AA6 3 ILE C 119 ASN C 121 0 SHEET 2 AA6 3 VAL C 126 LYS C 129 -1 O VAL C 127 N VAL C 120 SHEET 3 AA6 3 GLU C 169 SER C 172 -1 O TYR C 170 N ILE C 128 SHEET 1 AA7 2 PHE C 140 ASP C 142 0 SHEET 2 AA7 2 GLU C 156 ARG C 158 -1 O GLU C 156 N ASP C 142 SHEET 1 AA8 4 ASN C 354 LYS C 356 0 SHEET 2 AA8 4 VAL C 395 ARG C 403 -1 O SER C 399 N ASN C 354 SHEET 3 AA8 4 PRO C 507 PHE C 515 -1 O TYR C 508 N ILE C 402 SHEET 4 AA8 4 CYS C 432 ASN C 437 -1 N ILE C 434 O VAL C 511 SHEET 1 AA9 3 ALA A 397 ARG A 403 0 SHEET 2 AA9 3 PRO A 507 SER A 514 -1 O TYR A 508 N ILE A 402 SHEET 3 AA9 3 GLY A 431 TRP A 436 -1 N ILE A 434 O VAL A 511 SHEET 1 AB1 2 LEU A 452 ARG A 454 0 SHEET 2 AB1 2 LEU A 492 SER A 494 -1 O ARG A 493 N TYR A 453 SHEET 1 AB2 2 VAL A 539 PHE A 543 0 SHEET 2 AB2 2 LEU A 546 GLY A 550 -1 O LEU A 546 N PHE A 543 SHEET 1 AB3 4 GLN H 3 SER H 7 0 SHEET 2 AB3 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AB3 4 THR H 77 MET H 82 -1 O LEU H 78 N CYS H 22 SHEET 4 AB3 4 PHE H 67 THR H 68 -1 N THR H 68 O GLN H 81 SHEET 1 AB4 6 GLY H 10 LEU H 11 0 SHEET 2 AB4 6 THR H 110 THR H 113 1 O THR H 113 N GLY H 10 SHEET 3 AB4 6 ILE H 92 LEU H 99 -1 N TYR H 93 O THR H 110 SHEET 4 AB4 6 TYR H 33 GLN H 39 -1 N HIS H 35 O ALA H 96 SHEET 5 AB4 6 TRP H 47 LEU H 51 -1 O LEU H 51 N MET H 34 SHEET 6 AB4 6 ALA H 57 PHE H 58 -1 O PHE H 58 N VAL H 50 SHEET 1 AB5 4 GLY H 10 LEU H 11 0 SHEET 2 AB5 4 THR H 110 THR H 113 1 O THR H 113 N GLY H 10 SHEET 3 AB5 4 ILE H 92 LEU H 99 -1 N TYR H 93 O THR H 110 SHEET 4 AB5 4 TYR H 102 SER H 105 -1 O SER H 105 N ARG H 97 SHEET 1 AB6 2 MET L 4 THR L 5 0 SHEET 2 AB6 2 ARG L 24 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 1 AB7 2 SER L 10 SER L 12 0 SHEET 2 AB7 2 LYS L 104 GLU L 106 1 O LYS L 104 N VAL L 11 SHEET 1 AB8 4 GLN L 45 LEU L 46 0 SHEET 2 AB8 4 ALA L 34 GLN L 37 -1 N GLN L 37 O GLN L 45 SHEET 3 AB8 4 TYR L 87 ALA L 91 -1 O GLN L 89 N ALA L 34 SHEET 4 AB8 4 LEU L 97 PHE L 99 -1 O THR L 98 N GLN L 90 SHEET 1 AB9 2 ILE L 48 TYR L 49 0 SHEET 2 AB9 2 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AC1 2 PHE L 62 SER L 65 0 SHEET 2 AC1 2 THR L 72 ILE L 75 -1 O THR L 74 N SER L 63 SSBOND 1 CYS C 15 CYS C 136 1555 1555 2.03 SSBOND 2 CYS C 131 CYS C 166 1555 1555 2.03 SSBOND 3 CYS C 336 CYS C 361 1555 1555 2.03 SSBOND 4 CYS C 379 CYS C 432 1555 1555 2.03 SSBOND 5 CYS C 391 CYS C 525 1555 1555 2.03 SSBOND 6 CYS C 480 CYS C 488 1555 1555 2.03 SSBOND 7 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 8 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 9 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 10 CYS A 480 CYS A 488 1555 1555 2.03 SSBOND 11 CYS H 22 CYS H 95 1555 1555 2.03 SSBOND 12 CYS L 23 CYS L 88 1555 1555 2.03 LINK ND2 ASN C 61 C1 NAG C1301 1555 1555 1.44 LINK ND2 ASN C 122 C1 NAG C1302 1555 1555 1.45 LINK ND2 ASN C 165 C1 NAG C1303 1555 1555 1.44 LINK ND2 ASN C 234 C1 NAG C1304 1555 1555 1.44 LINK ND2 ASN C 282 C1 NAG C1305 1555 1555 1.44 LINK ND2 ASN C 343 C1 NAG C1306 1555 1555 1.44 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000