HEADER HYDROLASE 01-NOV-22 8HCE TITLE CRYSTAL STRUCTURE OF MTREX1-CMP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREE-PRIME REPAIR EXONUCLEASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3'-5' EXONUCLEASE TREX1; COMPND 5 EC: 3.1.11.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TREX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TREX1, DEDDH EXONUCLEASE, DNASE, RNASE, CMP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.HSIAO,K.W.HUANG,C.Y.WU REVDAT 3 13-DEC-23 8HCE 1 JRNL REVDAT 2 15-NOV-23 8HCE 1 JRNL REVDAT 1 08-NOV-23 8HCE 0 JRNL AUTH K.W.HUANG,C.Y.WU,S.I.TOH,T.C.LIU,C.I.TU,Y.H.LIN,A.J.CHENG, JRNL AUTH 2 Y.T.KAO,J.W.CHU,Y.Y.HSIAO JRNL TITL MOLECULAR INSIGHT INTO THE SPECIFIC ENZYMATIC PROPERTIES OF JRNL TITL 2 TREX1 REVEALING THE DIVERSE FUNCTIONS IN PROCESSING RNA AND JRNL TITL 3 DNA/RNA HYBRIDS. JRNL REF NUCLEIC ACIDS RES. V. 51 11927 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 37870446 JRNL DOI 10.1093/NAR/GKAD910 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 85186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.780 REMARK 3 FREE R VALUE TEST SET COUNT : 6626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.0770 - 4.6545 0.86 2529 197 0.1651 0.2036 REMARK 3 2 4.6545 - 3.6978 0.93 2611 216 0.1201 0.1613 REMARK 3 3 3.6978 - 3.2313 0.94 2579 244 0.1376 0.1764 REMARK 3 4 3.2313 - 2.9363 0.96 2678 195 0.1521 0.1881 REMARK 3 5 2.9363 - 2.7261 0.96 2648 231 0.1518 0.1826 REMARK 3 6 2.7261 - 2.5655 0.96 2607 233 0.1456 0.1686 REMARK 3 7 2.5655 - 2.4371 0.97 2643 222 0.1445 0.1954 REMARK 3 8 2.4371 - 2.3311 0.97 2682 213 0.1449 0.1644 REMARK 3 9 2.3311 - 2.2414 0.98 2665 219 0.1532 0.1998 REMARK 3 10 2.2414 - 2.1641 0.98 2666 233 0.1535 0.1788 REMARK 3 11 2.1641 - 2.0965 0.98 2647 234 0.1518 0.1830 REMARK 3 12 2.0965 - 2.0366 0.98 2631 252 0.1569 0.1808 REMARK 3 13 2.0366 - 1.9830 0.98 2643 232 0.1654 0.1991 REMARK 3 14 1.9830 - 1.9346 0.98 2667 216 0.1672 0.1958 REMARK 3 15 1.9346 - 1.8907 0.98 2613 237 0.1680 0.2133 REMARK 3 16 1.8907 - 1.8504 0.98 2653 218 0.1768 0.1923 REMARK 3 17 1.8504 - 1.8134 0.97 2624 215 0.1743 0.2076 REMARK 3 18 1.8134 - 1.7792 0.97 2619 214 0.1701 0.1997 REMARK 3 19 1.7792 - 1.7475 0.97 2642 228 0.1796 0.2142 REMARK 3 20 1.7475 - 1.7178 0.97 2611 232 0.1831 0.2146 REMARK 3 21 1.7178 - 1.6901 0.97 2613 221 0.1899 0.2220 REMARK 3 22 1.6901 - 1.6641 0.97 2587 226 0.1907 0.2283 REMARK 3 23 1.6641 - 1.6397 0.97 2607 198 0.1966 0.2412 REMARK 3 24 1.6397 - 1.6166 0.96 2634 208 0.2013 0.2104 REMARK 3 25 1.6166 - 1.5947 0.96 2611 200 0.2096 0.2206 REMARK 3 26 1.5947 - 1.5740 0.96 2561 234 0.2092 0.2307 REMARK 3 27 1.5740 - 1.5543 0.96 2594 203 0.2147 0.2184 REMARK 3 28 1.5543 - 1.5356 0.96 2618 209 0.2256 0.2359 REMARK 3 29 1.5356 - 1.5178 0.96 2576 222 0.2310 0.2365 REMARK 3 30 1.5178 - 1.5010 0.94 2501 224 0.2424 0.2610 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 31.9613 0.0708 19.1684 REMARK 3 T TENSOR REMARK 3 T11: 0.0881 T22: 0.0898 REMARK 3 T33: 0.1227 T12: 0.0073 REMARK 3 T13: 0.0031 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3550 L22: 0.6387 REMARK 3 L33: 1.1699 L12: 0.0817 REMARK 3 L13: 0.0145 L23: -0.0242 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.0064 S13: -0.0358 REMARK 3 S21: -0.0210 S22: -0.0219 S23: -0.0025 REMARK 3 S31: 0.0671 S32: 0.0177 S33: 0.0191 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300032531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5YWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M HEPES PH REMARK 280 7.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.02050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.01700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.82750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.01700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.02050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.82750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 165 REMARK 465 SER A 166 REMARK 465 SER A 167 REMARK 465 PRO A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 ASN A 171 REMARK 465 GLY A 172 REMARK 465 SER A 173 REMARK 465 PRO A 236 REMARK 465 ALA A 237 REMARK 465 THR A 238 REMARK 465 THR A 239 REMARK 465 GLY A 240 REMARK 465 THR A 241 REMARK 465 THR A 242 REMARK 465 LEU A 243 REMARK 465 GLU A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 PRO B 168 REMARK 465 SER B 169 REMARK 465 GLY B 170 REMARK 465 ASN B 171 REMARK 465 GLY B 172 REMARK 465 SER B 173 REMARK 465 ARG B 174 REMARK 465 PRO B 236 REMARK 465 ALA B 237 REMARK 465 THR B 238 REMARK 465 THR B 239 REMARK 465 GLY B 240 REMARK 465 THR B 241 REMARK 465 THR B 242 REMARK 465 LEU B 243 REMARK 465 GLU B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN B 213 O HOH B 403 1.49 REMARK 500 HD21 ASN A 46 O HOH A 403 1.51 REMARK 500 O HOH A 596 O HOH B 647 1.52 REMARK 500 O HOH B 543 O HOH B 580 2.00 REMARK 500 O HOH A 401 O HOH A 516 2.04 REMARK 500 O HOH B 683 O HOH B 692 2.05 REMARK 500 O HOH A 425 O HOH A 503 2.05 REMARK 500 O HOH A 424 O HOH A 441 2.05 REMARK 500 O LEU B 6 O HOH B 401 2.07 REMARK 500 O HOH A 403 O HOH A 622 2.08 REMARK 500 O HOH B 581 O HOH B 699 2.09 REMARK 500 O HOH B 636 O HOH B 722 2.11 REMARK 500 OD1 ASN A 46 O HOH A 401 2.12 REMARK 500 O HOH B 422 O HOH B 661 2.12 REMARK 500 OE1 GLU B 20 O HOH B 402 2.15 REMARK 500 O HOH A 535 O HOH A 683 2.16 REMARK 500 O HOH B 631 O HOH B 710 2.16 REMARK 500 O HOH A 544 O HOH A 592 2.17 REMARK 500 O ARG A 174 O HOH A 402 2.17 REMARK 500 O HOH B 403 O HOH B 408 2.17 REMARK 500 O HOH B 719 O HOH B 726 2.18 REMARK 500 O HOH A 434 O HOH A 633 2.19 REMARK 500 O HOH A 616 O HOH A 688 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 128 O HOH B 415 2655 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 164 CB GLN A 164 CG -0.167 REMARK 500 CYS B 119 CB CYS B 119 SG -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 129 -70.76 -136.88 REMARK 500 HIS B 8 22.42 -140.18 REMARK 500 TYR B 129 -72.76 -131.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 711 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH B 727 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 728 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 729 DISTANCE = 6.22 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8HCC RELATED DB: PDB REMARK 900 RELATED ID: 8HCD RELATED DB: PDB DBREF 8HCE A 1 242 UNP Q91XB0 TREX1_MOUSE 1 242 DBREF 8HCE B 1 242 UNP Q91XB0 TREX1_MOUSE 1 242 SEQADV 8HCE LEU A 243 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE GLU A 244 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS A 245 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS A 246 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS A 247 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS A 248 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS A 249 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS A 250 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE LEU B 243 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE GLU B 244 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS B 245 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS B 246 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS B 247 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS B 248 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS B 249 UNP Q91XB0 EXPRESSION TAG SEQADV 8HCE HIS B 250 UNP Q91XB0 EXPRESSION TAG SEQRES 1 A 250 MET GLY SER GLN THR LEU PRO HIS GLY HIS MET GLN THR SEQRES 2 A 250 LEU ILE PHE LEU ASP LEU GLU ALA THR GLY LEU PRO SER SEQRES 3 A 250 SER ARG PRO GLU VAL THR GLU LEU CYS LEU LEU ALA VAL SEQRES 4 A 250 HIS ARG ARG ALA LEU GLU ASN THR SER ILE SER GLN GLY SEQRES 5 A 250 HIS PRO PRO PRO VAL PRO ARG PRO PRO ARG VAL VAL ASP SEQRES 6 A 250 LYS LEU SER LEU CYS ILE ALA PRO GLY LYS ALA CYS SER SEQRES 7 A 250 PRO GLY ALA SER GLU ILE THR GLY LEU SER LYS ALA GLU SEQRES 8 A 250 LEU GLU VAL GLN GLY ARG GLN ARG PHE ASP ASP ASN LEU SEQRES 9 A 250 ALA ILE LEU LEU ARG ALA PHE LEU GLN ARG GLN PRO GLN SEQRES 10 A 250 PRO CYS CYS LEU VAL ALA HIS ASN GLY ASP ARG TYR ASP SEQRES 11 A 250 PHE PRO LEU LEU GLN THR GLU LEU ALA ARG LEU SER THR SEQRES 12 A 250 PRO SER PRO LEU ASP GLY THR PHE CYS VAL ASP SER ILE SEQRES 13 A 250 ALA ALA LEU LYS ALA LEU GLU GLN ALA SER SER PRO SER SEQRES 14 A 250 GLY ASN GLY SER ARG LYS SER TYR SER LEU GLY SER ILE SEQRES 15 A 250 TYR THR ARG LEU TYR TRP GLN ALA PRO THR ASP SER HIS SEQRES 16 A 250 THR ALA GLU GLY ASP VAL LEU THR LEU LEU SER ILE CYS SEQRES 17 A 250 GLN TRP LYS PRO GLN ALA LEU LEU GLN TRP VAL ASP GLU SEQRES 18 A 250 HIS ALA ARG PRO PHE SER THR VAL LYS PRO MET TYR GLY SEQRES 19 A 250 THR PRO ALA THR THR GLY THR THR LEU GLU HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS SEQRES 1 B 250 MET GLY SER GLN THR LEU PRO HIS GLY HIS MET GLN THR SEQRES 2 B 250 LEU ILE PHE LEU ASP LEU GLU ALA THR GLY LEU PRO SER SEQRES 3 B 250 SER ARG PRO GLU VAL THR GLU LEU CYS LEU LEU ALA VAL SEQRES 4 B 250 HIS ARG ARG ALA LEU GLU ASN THR SER ILE SER GLN GLY SEQRES 5 B 250 HIS PRO PRO PRO VAL PRO ARG PRO PRO ARG VAL VAL ASP SEQRES 6 B 250 LYS LEU SER LEU CYS ILE ALA PRO GLY LYS ALA CYS SER SEQRES 7 B 250 PRO GLY ALA SER GLU ILE THR GLY LEU SER LYS ALA GLU SEQRES 8 B 250 LEU GLU VAL GLN GLY ARG GLN ARG PHE ASP ASP ASN LEU SEQRES 9 B 250 ALA ILE LEU LEU ARG ALA PHE LEU GLN ARG GLN PRO GLN SEQRES 10 B 250 PRO CYS CYS LEU VAL ALA HIS ASN GLY ASP ARG TYR ASP SEQRES 11 B 250 PHE PRO LEU LEU GLN THR GLU LEU ALA ARG LEU SER THR SEQRES 12 B 250 PRO SER PRO LEU ASP GLY THR PHE CYS VAL ASP SER ILE SEQRES 13 B 250 ALA ALA LEU LYS ALA LEU GLU GLN ALA SER SER PRO SER SEQRES 14 B 250 GLY ASN GLY SER ARG LYS SER TYR SER LEU GLY SER ILE SEQRES 15 B 250 TYR THR ARG LEU TYR TRP GLN ALA PRO THR ASP SER HIS SEQRES 16 B 250 THR ALA GLU GLY ASP VAL LEU THR LEU LEU SER ILE CYS SEQRES 17 B 250 GLN TRP LYS PRO GLN ALA LEU LEU GLN TRP VAL ASP GLU SEQRES 18 B 250 HIS ALA ARG PRO PHE SER THR VAL LYS PRO MET TYR GLY SEQRES 19 B 250 THR PRO ALA THR THR GLY THR THR LEU GLU HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS HET EPE A 301 32 HET SO4 A 302 5 HET SO4 A 303 5 HET NH4 A 304 5 HET NH4 A 305 5 HET C5P B 301 33 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETNAM NH4 AMMONIUM ION HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETSYN EPE HEPES FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 NH4 2(H4 N 1+) FORMUL 8 C5P C9 H14 N3 O8 P FORMUL 9 HOH *641(H2 O) HELIX 1 AA1 LEU A 24 ARG A 28 5 5 HELIX 2 AA2 ARG A 41 ASN A 46 1 6 HELIX 3 AA3 SER A 78 GLY A 86 1 9 HELIX 4 AA4 SER A 88 GLN A 95 1 8 HELIX 5 AA5 ASP A 101 ARG A 114 1 14 HELIX 6 AA6 TYR A 129 ARG A 140 1 12 HELIX 7 AA7 SER A 155 GLU A 163 1 9 HELIX 8 AA8 SER A 178 TRP A 188 1 11 HELIX 9 AA9 THR A 196 GLN A 209 1 14 HELIX 10 AB1 LYS A 211 ALA A 223 1 13 HELIX 11 AB2 SER A 227 VAL A 229 5 3 HELIX 12 AB3 LEU B 24 ARG B 28 5 5 HELIX 13 AB4 ARG B 41 ASN B 46 1 6 HELIX 14 AB5 SER B 78 GLY B 86 1 9 HELIX 15 AB6 SER B 88 GLN B 95 1 8 HELIX 16 AB7 ASP B 101 ARG B 114 1 14 HELIX 17 AB8 TYR B 129 ARG B 140 1 12 HELIX 18 AB9 SER B 155 SER B 166 1 12 HELIX 19 AC1 SER B 178 TRP B 188 1 11 HELIX 20 AC2 THR B 196 GLN B 209 1 14 HELIX 21 AC3 LYS B 211 ALA B 223 1 13 HELIX 22 AC4 SER B 227 VAL B 229 5 3 SHEET 1 AA112 ARG A 224 PRO A 225 0 SHEET 2 AA112 PHE A 151 ASP A 154 -1 N CYS A 152 O ARG A 224 SHEET 3 AA112 CYS A 119 ALA A 123 1 N LEU A 121 O PHE A 151 SHEET 4 AA112 THR A 13 ALA A 21 1 N LEU A 17 O VAL A 122 SHEET 5 AA112 VAL A 31 HIS A 40 -1 O VAL A 39 N LEU A 14 SHEET 6 AA112 ASP A 65 CYS A 70 -1 O ASP A 65 N ALA A 38 SHEET 7 AA112 ASP B 65 CYS B 70 -1 O SER B 68 N LYS A 66 SHEET 8 AA112 VAL B 31 HIS B 40 -1 N LEU B 34 O LEU B 69 SHEET 9 AA112 THR B 13 ALA B 21 -1 N LEU B 14 O VAL B 39 SHEET 10 AA112 CYS B 119 ALA B 123 1 O CYS B 120 N ILE B 15 SHEET 11 AA112 PHE B 151 ASP B 154 1 O PHE B 151 N LEU B 121 SHEET 12 AA112 ARG B 224 PRO B 225 -1 O ARG B 224 N CYS B 152 CISPEP 1 HIS A 53 PRO A 54 0 1.51 CISPEP 2 GLN A 117 PRO A 118 0 -1.34 CISPEP 3 HIS B 53 PRO B 54 0 0.31 CISPEP 4 GLN B 117 PRO B 118 0 -3.98 CRYST1 64.041 85.655 100.034 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009997 0.00000