HEADER DNA BINDING PROTEIN/DNA 01-NOV-22 8HCL TITLE ZEBRAFISH IRF-10 DBD COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*TP*GP*AP*AP*GP*TP*GP*AP*AP*AP*GP*T)-3'); COMPND 3 CHAIN: C, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*AP*CP*TP*TP*TP*CP*AP*CP*TP*TP*CP*A)-3'); COMPND 7 CHAIN: D, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERFERON REGULATORY FACTOR 10; COMPND 11 CHAIN: A, B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 11 ORGANISM_COMMON: ZEBRAFISH; SOURCE 12 ORGANISM_TAXID: 7955; SOURCE 13 GENE: IRF10, SO:0001217; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZEBRAFISH, IRF, DBD, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.X.WANG,Y.A.ZHANG,S.Y.OUYANG REVDAT 3 04-SEP-24 8HCL 1 JRNL REVDAT 2 07-AUG-24 8HCL 1 JRNL REVDAT 1 15-MAY-24 8HCL 0 JRNL AUTH Z.X.WANG,B.LIU,H.XIE,X.LIU,X.LI,F.SHI,S.OUYANG,Y.A.ZHANG JRNL TITL CRYSTAL STRUCTURES OF DNA-BOUND FISH IRF10 AND IRF11 REVEAL JRNL TITL 2 THE DETERMINANTS OF IFN REGULATION. JRNL REF J IMMUNOL. V. 213 743 2024 JRNL REFN ESSN 1550-6606 JRNL PMID 39058321 JRNL DOI 10.4049/JIMMUNOL.2300414 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 25631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.770 REMARK 3 FREE R VALUE TEST SET COUNT : 3550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8300 - 5.8100 0.90 1682 152 0.1885 0.1897 REMARK 3 2 5.8100 - 4.6200 0.93 1777 145 0.1924 0.1806 REMARK 3 3 4.6200 - 4.0300 0.93 1735 142 0.1667 0.2139 REMARK 3 4 4.0300 - 3.6700 0.94 1773 148 0.1759 0.2170 REMARK 3 5 3.6600 - 3.4000 0.91 1719 135 0.1963 0.2194 REMARK 3 6 3.4000 - 3.2000 0.89 1675 144 0.2136 0.2737 REMARK 3 7 3.2000 - 3.0400 0.91 1706 142 0.2446 0.3167 REMARK 3 8 3.0400 - 2.9100 0.91 1742 143 0.2557 0.3007 REMARK 3 9 2.9100 - 2.8000 0.90 1660 141 0.2501 0.3130 REMARK 3 10 2.8000 - 2.7000 0.90 1701 144 0.2637 0.3118 REMARK 3 11 2.7000 - 2.6200 0.88 1676 148 0.2558 0.3149 REMARK 3 12 2.6200 - 2.5400 0.89 1646 142 0.2504 0.2829 REMARK 3 13 2.5400 - 2.4700 0.87 1629 126 0.2548 0.2746 REMARK 3 14 2.4700 - 2.4100 0.91 1730 147 0.2657 0.3518 REMARK 3 15 2.4100 - 2.3600 0.89 1635 142 0.2659 0.3177 REMARK 3 16 2.3600 - 2.3100 0.89 1713 141 0.2708 0.3223 REMARK 3 17 2.3100 - 2.2600 0.88 1650 140 0.2768 0.3137 REMARK 3 18 2.2600 - 2.2200 0.88 1618 143 0.2682 0.3333 REMARK 3 19 2.2200 - 2.1800 0.88 1708 139 0.2755 0.3346 REMARK 3 20 2.1800 - 2.1400 0.89 1671 147 0.2847 0.3279 REMARK 3 21 2.1400 - 2.1100 0.89 1594 127 0.2903 0.3501 REMARK 3 22 2.1100 - 2.0800 0.89 1740 144 0.2880 0.3825 REMARK 3 23 2.0800 - 2.0500 0.89 1676 149 0.3036 0.3616 REMARK 3 24 2.0500 - 2.0200 0.89 1672 137 0.3169 0.3769 REMARK 3 25 2.0200 - 1.9900 0.87 1611 142 0.3265 0.3382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.287 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2900 REMARK 3 ANGLE : 1.509 4105 REMARK 3 CHIRALITY : 0.073 427 REMARK 3 PLANARITY : 0.012 356 REMARK 3 DIHEDRAL : 27.357 700 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 298.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25670 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 55.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: 2IRF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE PH 4.5, REMARK 280 25% POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.23500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 25 REMARK 465 GLU B 26 REMARK 465 LEU B 96 REMARK 465 ASP B 97 REMARK 465 ILE B 98 REMARK 465 SER B 99 REMARK 465 GLU B 100 REMARK 465 LEU B 108 REMARK 465 GLU B 109 REMARK 465 ASP B 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 230 O HOH B 238 1.86 REMARK 500 O HOH D 114 O HOH A 252 1.89 REMARK 500 OP2 DT C -5 O HOH C 101 2.02 REMARK 500 OE1 GLU A 63 O HOH A 201 2.03 REMARK 500 O HOH F 114 O HOH B 241 2.04 REMARK 500 O HOH B 230 O HOH B 236 2.06 REMARK 500 O HOH A 229 O HOH A 239 2.06 REMARK 500 O HOH B 239 O HOH B 247 2.08 REMARK 500 O HOH B 223 O HOH B 246 2.09 REMARK 500 O HOH F 114 O HOH F 115 2.12 REMARK 500 OP1 DA E -9 O HOH E 101 2.14 REMARK 500 OE1 GLN A 62 NH2 ARG A 65 2.14 REMARK 500 OP2 DG F 1 O HOH F 101 2.15 REMARK 500 OE1 GLU A 6 O HOH A 202 2.17 REMARK 500 OE2 GLU A 6 O HOH A 203 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C -5 O3' DT C -5 C3' -0.052 REMARK 500 DA F -7 O3' DA F -7 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D -4 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA D -4 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 GLN A 40 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 ARG B 65 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 34 49.28 -147.17 REMARK 500 GLU A 63 108.93 -58.05 REMARK 500 GLU A 100 74.69 -111.08 REMARK 500 TRP B 34 53.34 -145.11 REMARK 500 LYS B 52 -69.55 -27.85 REMARK 500 ARG B 65 -91.31 -13.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 65 ASP B 66 -143.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 249 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH B 250 DISTANCE = 7.79 ANGSTROMS DBREF 8HCL C -10 1 PDB 8HCL 8HCL -10 1 DBREF 8HCL D -10 1 PDB 8HCL 8HCL -10 1 DBREF 8HCL E -9 2 PDB 8HCL 8HCL -9 2 DBREF 8HCL F -9 2 PDB 8HCL 8HCL -9 2 DBREF 8HCL A 2 110 UNP A8E5I1 A8E5I1_DANRE 8 116 DBREF 8HCL B 2 110 UNP A8E5I1 A8E5I1_DANRE 8 116 SEQRES 1 C 12 DT DG DA DA DG DT DG DA DA DA DG DT SEQRES 1 D 12 DA DC DT DT DT DC DA DC DT DT DC DA SEQRES 1 E 12 DA DC DT DT DT DC DA DC DT DT DC DA SEQRES 1 F 12 DT DG DA DA DG DT DG DA DA DA DG DT SEQRES 1 A 109 MET ARG LEU ARG GLU TRP LEU ILE ALA GLN ILE ASP SER SEQRES 2 A 109 ALA GLU TYR PRO GLY LEU SER TRP GLU ASN ALA GLU LYS SEQRES 3 A 109 SER MET PHE ARG ILE PRO TRP LYS HIS ALA ALA LYS GLN SEQRES 4 A 109 ASP TYR ARG GLN ASN GLN ASP ALA ALA LEU PHE LYS ALA SEQRES 5 A 109 TRP ALA MET TYR LYS GLY LYS PHE GLN GLU GLY ARG ASP SEQRES 6 A 109 LYS ALA ASP PRO SER THR TRP LYS THR ARG LEU ARG CYS SEQRES 7 A 109 ALA LEU ASN LYS SER THR ASP PHE GLN GLU VAL SER GLU SEQRES 8 A 109 ARG SER GLN LEU ASP ILE SER GLU PRO TYR LYS VAL TYR SEQRES 9 A 109 ARG ILE LEU GLU ASP SEQRES 1 B 109 MET ARG LEU ARG GLU TRP LEU ILE ALA GLN ILE ASP SER SEQRES 2 B 109 ALA GLU TYR PRO GLY LEU SER TRP GLU ASN ALA GLU LYS SEQRES 3 B 109 SER MET PHE ARG ILE PRO TRP LYS HIS ALA ALA LYS GLN SEQRES 4 B 109 ASP TYR ARG GLN ASN GLN ASP ALA ALA LEU PHE LYS ALA SEQRES 5 B 109 TRP ALA MET TYR LYS GLY LYS PHE GLN GLU GLY ARG ASP SEQRES 6 B 109 LYS ALA ASP PRO SER THR TRP LYS THR ARG LEU ARG CYS SEQRES 7 B 109 ALA LEU ASN LYS SER THR ASP PHE GLN GLU VAL SER GLU SEQRES 8 B 109 ARG SER GLN LEU ASP ILE SER GLU PRO TYR LYS VAL TYR SEQRES 9 B 109 ARG ILE LEU GLU ASP FORMUL 7 HOH *185(H2 O) HELIX 1 AA1 ARG A 3 ALA A 15 1 13 HELIX 2 AA2 ARG A 43 ALA A 48 1 6 HELIX 3 AA3 ALA A 48 LYS A 58 1 11 HELIX 4 AA4 ASP A 69 SER A 84 1 16 HELIX 5 AA5 SER A 91 SER A 94 5 4 HELIX 6 AA6 ARG B 3 ALA B 15 1 13 HELIX 7 AA7 ARG B 43 ALA B 48 1 6 HELIX 8 AA8 ALA B 48 LYS B 58 1 11 HELIX 9 AA9 ASP B 69 SER B 84 1 16 SHEET 1 AA1 4 SER A 21 TRP A 22 0 SHEET 2 AA1 4 MET A 29 PRO A 33 -1 O ARG A 31 N SER A 21 SHEET 3 AA1 4 TYR A 102 ILE A 107 -1 O LYS A 103 N ILE A 32 SHEET 4 AA1 4 PHE A 87 GLU A 89 -1 N GLN A 88 O ARG A 106 SHEET 1 AA2 4 SER B 21 TRP B 22 0 SHEET 2 AA2 4 MET B 29 PRO B 33 -1 O ARG B 31 N SER B 21 SHEET 3 AA2 4 TYR B 102 ARG B 106 -1 O LYS B 103 N ILE B 32 SHEET 4 AA2 4 GLN B 88 GLU B 89 -1 N GLN B 88 O ARG B 106 CRYST1 40.010 86.470 57.150 90.00 103.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024994 0.000000 0.006216 0.00000 SCALE2 0.000000 0.011565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018031 0.00000