HEADER HORMONE 08-NOV-22 8HEJ TITLE CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH A COVALENT TITLE 2 INHIBITOR TRANS-STYRYLPYRAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATTR,PREALBUMIN,TBPA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR H.KIM,S.CHOI,C.LEE REVDAT 1 15-NOV-23 8HEJ 0 JRNL AUTH S.LEE,S.CHOI JRNL TITL CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH A JRNL TITL 2 COVALENT INHIBITOR TRANS-STYRYLPYRAZOLE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1070 - 3.4234 0.98 3225 145 0.1716 0.2309 REMARK 3 2 3.4234 - 2.7178 1.00 3127 140 0.1773 0.2104 REMARK 3 3 2.7178 - 2.3744 1.00 3080 138 0.1915 0.2090 REMARK 3 4 2.3744 - 2.1574 1.00 3076 139 0.1787 0.2185 REMARK 3 5 2.1574 - 2.0028 1.00 3070 137 0.1758 0.1876 REMARK 3 6 2.0028 - 1.8848 1.00 3032 137 0.1809 0.2271 REMARK 3 7 1.8848 - 1.7904 1.00 3038 135 0.2148 0.2344 REMARK 3 8 1.7904 - 1.7124 1.00 3021 136 0.2331 0.2700 REMARK 3 9 1.7124 - 1.6465 1.00 3030 137 0.2323 0.2626 REMARK 3 10 1.6465 - 1.5897 1.00 3031 136 0.2293 0.2679 REMARK 3 11 1.5897 - 1.5400 1.00 3026 135 0.2337 0.2561 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1905 REMARK 3 ANGLE : 1.162 2602 REMARK 3 CHIRALITY : 0.082 291 REMARK 3 PLANARITY : 0.009 330 REMARK 3 DIHEDRAL : 6.202 2248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 23 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 11:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.429 1.437 -2.670 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.1717 REMARK 3 T33: 0.1470 T12: -0.0058 REMARK 3 T13: -0.0074 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 4.7086 L22: 4.0594 REMARK 3 L33: 8.1990 L12: 4.3773 REMARK 3 L13: -6.2389 L23: -5.8090 REMARK 3 S TENSOR REMARK 3 S11: 0.2184 S12: -0.4299 S13: -0.2805 REMARK 3 S21: 0.5997 S22: -0.4657 S23: -0.2200 REMARK 3 S31: -0.1932 S32: 0.4033 S33: 0.2720 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 19:28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.658 12.047 -5.498 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.1484 REMARK 3 T33: 0.2052 T12: -0.0068 REMARK 3 T13: -0.0135 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 5.0759 L22: 0.3547 REMARK 3 L33: 7.1288 L12: -0.2307 REMARK 3 L13: -6.0238 L23: 0.2555 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: -0.1126 S13: 0.5183 REMARK 3 S21: 0.1254 S22: 0.0632 S23: 0.1520 REMARK 3 S31: -0.0935 S32: -0.0674 S33: -0.1729 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 29:40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.485 -4.929 -7.901 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.2400 REMARK 3 T33: 0.2949 T12: 0.0001 REMARK 3 T13: -0.0097 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 3.5098 L22: 7.7963 REMARK 3 L33: 2.9442 L12: 4.8774 REMARK 3 L13: 0.0899 L23: -1.1270 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: 0.2991 S13: 0.0235 REMARK 3 S21: -0.5134 S22: 0.0975 S23: 0.4795 REMARK 3 S31: 0.2548 S32: -0.3990 S33: -0.1149 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 41:48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.596 -0.704 -3.933 REMARK 3 T TENSOR REMARK 3 T11: 0.1330 T22: 0.1523 REMARK 3 T33: 0.2011 T12: 0.0323 REMARK 3 T13: 0.0377 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 5.5889 L22: 5.5880 REMARK 3 L33: 7.7580 L12: 1.1173 REMARK 3 L13: 2.1498 L23: 3.5919 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: -0.3091 S13: 0.2648 REMARK 3 S21: -0.0391 S22: -0.4391 S23: 0.5777 REMARK 3 S31: 0.1204 S32: -0.4688 S33: 0.4266 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 49:58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.346 4.949 2.474 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.2441 REMARK 3 T33: 0.1469 T12: -0.0166 REMARK 3 T13: 0.0104 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.7461 L22: 7.1477 REMARK 3 L33: 3.4028 L12: 4.8666 REMARK 3 L13: -3.3851 L23: -4.7677 REMARK 3 S TENSOR REMARK 3 S11: 0.2370 S12: -0.6600 S13: 0.0502 REMARK 3 S21: 0.3901 S22: -0.3663 S23: 0.0600 REMARK 3 S31: -0.1979 S32: 0.3247 S33: 0.1750 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 59:66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.628 -10.636 3.687 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.1707 REMARK 3 T33: 0.2297 T12: -0.0018 REMARK 3 T13: 0.0644 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 8.3351 L22: 5.2826 REMARK 3 L33: 4.1517 L12: 6.5789 REMARK 3 L13: 5.3641 L23: 4.4529 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: -0.2260 S13: -0.2814 REMARK 3 S21: 0.3855 S22: -0.0775 S23: 0.1718 REMARK 3 S31: 0.5437 S32: 0.0384 S33: -0.0232 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 67:81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.018 5.356 -10.023 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.1575 REMARK 3 T33: 0.1672 T12: 0.0486 REMARK 3 T13: -0.0077 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.9354 L22: 6.7512 REMARK 3 L33: 2.7075 L12: 3.1438 REMARK 3 L13: -0.4445 L23: -2.3968 REMARK 3 S TENSOR REMARK 3 S11: -0.1637 S12: 0.0090 S13: 0.3676 REMARK 3 S21: -0.0575 S22: 0.1499 S23: 0.6337 REMARK 3 S31: -0.2329 S32: -0.2016 S33: 0.0043 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 82:90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.283 12.105 -16.842 REMARK 3 T TENSOR REMARK 3 T11: 0.3119 T22: 0.1251 REMARK 3 T33: 0.2039 T12: -0.0172 REMARK 3 T13: -0.1010 T23: 0.0714 REMARK 3 L TENSOR REMARK 3 L11: 3.7213 L22: 7.5327 REMARK 3 L33: 6.7064 L12: 0.1760 REMARK 3 L13: -0.5158 L23: 5.3761 REMARK 3 S TENSOR REMARK 3 S11: -0.1966 S12: 0.2966 S13: 0.2230 REMARK 3 S21: 0.5241 S22: -0.0045 S23: -0.7509 REMARK 3 S31: -1.0817 S32: -0.0889 S33: 0.1115 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 91:97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.153 -6.348 -10.418 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.1467 REMARK 3 T33: 0.1213 T12: -0.0053 REMARK 3 T13: -0.0110 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 8.1471 L22: 3.4202 REMARK 3 L33: 9.8030 L12: 2.8483 REMARK 3 L13: -7.1279 L23: -5.3357 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: -0.0270 S13: -0.0546 REMARK 3 S21: 0.0523 S22: -0.0426 S23: 0.0046 REMARK 3 S31: -0.3072 S32: -0.1143 S33: -0.2130 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 98:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.859 -5.033 -7.160 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.1357 REMARK 3 T33: 0.1055 T12: 0.0105 REMARK 3 T13: 0.0079 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.1268 L22: 7.5065 REMARK 3 L33: 5.7054 L12: 2.1039 REMARK 3 L13: -1.6235 L23: -4.8860 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.1211 S13: -0.2269 REMARK 3 S21: 0.1191 S22: -0.1338 S23: -0.0457 REMARK 3 S31: 0.0731 S32: 0.1388 S33: 0.1275 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 11:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.094 -2.572 -29.476 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.1963 REMARK 3 T33: 0.1299 T12: -0.0351 REMARK 3 T13: -0.0272 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 3.3769 L22: 5.7578 REMARK 3 L33: 8.2838 L12: -0.5752 REMARK 3 L13: 2.5785 L23: -6.4430 REMARK 3 S TENSOR REMARK 3 S11: 0.1672 S12: 0.6644 S13: 0.1102 REMARK 3 S21: -0.4649 S22: -0.3219 S23: 0.0484 REMARK 3 S31: 0.0271 S32: 0.3321 S33: 0.2341 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 19:28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.267 -12.430 -26.500 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.2093 REMARK 3 T33: 0.1959 T12: -0.0131 REMARK 3 T13: 0.0098 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 6.9550 L22: 0.2982 REMARK 3 L33: 8.7091 L12: 0.6698 REMARK 3 L13: 6.4326 L23: 1.2908 REMARK 3 S TENSOR REMARK 3 S11: 0.0727 S12: 0.3229 S13: -0.4079 REMARK 3 S21: -0.2179 S22: 0.0704 S23: -0.0086 REMARK 3 S31: 0.0206 S32: 0.1105 S33: -0.3557 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 29:40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.585 0.602 -24.087 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.3239 REMARK 3 T33: 0.3772 T12: 0.0016 REMARK 3 T13: 0.0085 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 6.0712 L22: 4.3140 REMARK 3 L33: 8.1284 L12: -5.1235 REMARK 3 L13: -2.8685 L23: 2.6028 REMARK 3 S TENSOR REMARK 3 S11: -0.1714 S12: 0.1520 S13: -0.5722 REMARK 3 S21: 0.4518 S22: -0.2153 S23: 1.1851 REMARK 3 S31: -0.1270 S32: -1.0877 S33: 0.2753 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN B AND RESID 41:48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.168 -3.210 -28.237 REMARK 3 T TENSOR REMARK 3 T11: 0.2378 T22: 0.1932 REMARK 3 T33: 0.2593 T12: -0.0059 REMARK 3 T13: -0.0326 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 3.1699 L22: 6.1928 REMARK 3 L33: 8.6500 L12: -0.6718 REMARK 3 L13: -4.4834 L23: 4.6548 REMARK 3 S TENSOR REMARK 3 S11: -0.1190 S12: 0.1523 S13: -0.4041 REMARK 3 S21: 0.2860 S22: -0.3456 S23: 0.9396 REMARK 3 S31: -0.1924 S32: -0.3194 S33: 0.6123 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN B AND RESID 49:58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.329 -6.287 -34.680 REMARK 3 T TENSOR REMARK 3 T11: 0.2982 T22: 0.3585 REMARK 3 T33: 0.1816 T12: 0.0038 REMARK 3 T13: -0.0262 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.4209 L22: 3.4465 REMARK 3 L33: 4.0097 L12: -2.7700 REMARK 3 L13: 2.9237 L23: -3.5965 REMARK 3 S TENSOR REMARK 3 S11: 0.1649 S12: 1.1120 S13: 0.1293 REMARK 3 S21: -0.5430 S22: -0.5187 S23: -0.0585 REMARK 3 S31: -0.1621 S32: 0.5030 S33: 0.4120 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: ( CHAIN B AND RESID 59:66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.414 7.527 -35.849 REMARK 3 T TENSOR REMARK 3 T11: 0.3243 T22: 0.2881 REMARK 3 T33: 0.3374 T12: 0.0212 REMARK 3 T13: -0.1079 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.8083 L22: 5.2409 REMARK 3 L33: 6.9606 L12: -5.0367 REMARK 3 L13: -5.7743 L23: 6.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.1333 S12: 0.0797 S13: -0.0125 REMARK 3 S21: -0.3447 S22: -0.1761 S23: -0.1667 REMARK 3 S31: -0.5639 S32: -0.0761 S33: 0.1880 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: ( CHAIN B AND RESID 67:74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.938 -1.210 -23.586 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.2177 REMARK 3 T33: 0.2154 T12: -0.0151 REMARK 3 T13: -0.0315 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 7.1050 L22: 4.8857 REMARK 3 L33: 4.1204 L12: -5.4838 REMARK 3 L13: 2.6473 L23: -3.4757 REMARK 3 S TENSOR REMARK 3 S11: 0.1933 S12: 0.0583 S13: -0.6012 REMARK 3 S21: -0.1474 S22: -0.1942 S23: 1.0542 REMARK 3 S31: -0.1740 S32: -0.1315 S33: -0.0506 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: ( CHAIN B AND RESID 75:82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.820 -16.103 -20.655 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.1479 REMARK 3 T33: 0.2147 T12: -0.0170 REMARK 3 T13: -0.0005 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 9.2234 L22: 6.7101 REMARK 3 L33: 3.1158 L12: -1.8668 REMARK 3 L13: -2.8883 L23: 4.2730 REMARK 3 S TENSOR REMARK 3 S11: -0.1636 S12: 0.2153 S13: -0.7405 REMARK 3 S21: -0.0383 S22: 0.0871 S23: 0.2411 REMARK 3 S31: 0.4236 S32: -0.0870 S33: 0.1870 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: ( CHAIN B AND RESID 83:90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.489 -13.153 -14.549 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.1833 REMARK 3 T33: 0.2149 T12: -0.0009 REMARK 3 T13: -0.0262 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 5.8945 L22: 5.1392 REMARK 3 L33: 4.3015 L12: -0.3695 REMARK 3 L13: -3.4425 L23: 3.6280 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: -0.0886 S13: -0.3131 REMARK 3 S21: -0.2491 S22: -0.1452 S23: 0.1523 REMARK 3 S31: 0.3211 S32: -0.1244 S33: 0.0876 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: ( CHAIN B AND RESID 91:97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.819 3.551 -21.706 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.1722 REMARK 3 T33: 0.1546 T12: 0.0181 REMARK 3 T13: 0.0058 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 5.1645 L22: 4.7963 REMARK 3 L33: 4.3002 L12: -1.2800 REMARK 3 L13: 3.8579 L23: -3.4167 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.1504 S13: -0.0840 REMARK 3 S21: 0.4809 S22: 0.1732 S23: 0.3204 REMARK 3 S31: -0.2136 S32: 0.0736 S33: -0.2786 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: ( CHAIN B AND RESID 98:103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.621 15.543 -31.864 REMARK 3 T TENSOR REMARK 3 T11: 0.7427 T22: 0.7631 REMARK 3 T33: 0.8620 T12: 0.1736 REMARK 3 T13: -0.0151 T23: 0.3311 REMARK 3 L TENSOR REMARK 3 L11: 0.2671 L22: 1.7780 REMARK 3 L33: 3.9603 L12: -0.4316 REMARK 3 L13: 0.1562 L23: 0.8908 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.1999 S13: 0.9696 REMARK 3 S21: 0.2077 S22: -1.4271 S23: -1.7343 REMARK 3 S31: -0.7514 S32: 1.7269 S33: 1.4563 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: ( CHAIN B AND RESID 104:112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.134 0.841 -26.563 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.2147 REMARK 3 T33: 0.1449 T12: -0.0260 REMARK 3 T13: -0.0289 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.4379 L22: 2.0686 REMARK 3 L33: 4.3450 L12: -2.1529 REMARK 3 L13: 2.0251 L23: -1.7543 REMARK 3 S TENSOR REMARK 3 S11: -0.0891 S12: 0.4023 S13: 0.1530 REMARK 3 S21: -0.0356 S22: -0.0590 S23: 0.0090 REMARK 3 S31: -0.3573 S32: -0.0322 S33: 0.1416 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: ( CHAIN B AND RESID 113:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.609 0.497 -21.341 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1815 REMARK 3 T33: 0.1196 T12: -0.0300 REMARK 3 T13: -0.0001 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 3.7077 L22: 7.5329 REMARK 3 L33: 7.5530 L12: -0.4056 REMARK 3 L13: 0.5598 L23: -4.9225 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: 0.2965 S13: 0.1824 REMARK 3 S21: -0.1476 S22: 0.0059 S23: -0.1181 REMARK 3 S31: -0.1363 S32: -0.1083 S33: 0.0841 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88572 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3HJ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE PH5.5, GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.47250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.34250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.47250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.34250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C01 XHF A 201 LIES ON A SPECIAL POSITION. REMARK 375 C12 XHF A 201 LIES ON A SPECIAL POSITION. REMARK 375 O07 XHF A 201 LIES ON A SPECIAL POSITION. REMARK 375 C01 XHF B 201 LIES ON A SPECIAL POSITION. REMARK 375 C12 XHF B 201 LIES ON A SPECIAL POSITION. REMARK 375 O07 XHF B 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 357 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 117 CA REMARK 480 SER B 117 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 48 O HOH A 301 1.84 REMARK 500 NZ LYS A 15 O34 XHB A 202 1.88 REMARK 500 NH1 ARG B 21 O HOH B 301 1.91 REMARK 500 NZ LYS A 35 O HOH A 302 2.06 REMARK 500 OE1 GLU B 62 O HOH B 302 2.10 REMARK 500 O HOH A 366 O HOH A 381 2.11 REMARK 500 O HOH B 362 O HOH B 366 2.15 REMARK 500 O HOH A 304 O HOH A 382 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 303 O HOH A 321 3445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 100 57.76 -149.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 8HEJ A 11 124 UNP P02766 TTHY_HUMAN 31 144 DBREF 8HEJ B 11 124 UNP P02766 TTHY_HUMAN 31 144 SEQRES 1 A 114 PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER SEQRES 2 A 114 PRO ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA SEQRES 3 A 114 ALA ASP ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SEQRES 4 A 114 SER GLU SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU SEQRES 5 A 114 GLU PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR SEQRES 6 A 114 LYS SER TYR TRP LYS ALA LEU GLY ILE SER PRO PHE HIS SEQRES 7 A 114 GLU HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY SEQRES 8 A 114 PRO ARG ARG TYR THR ILE ALA ALA LEU LEU SER PRO TYR SEQRES 9 A 114 SER TYR SER THR THR ALA VAL VAL THR ASN SEQRES 1 B 114 PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER SEQRES 2 B 114 PRO ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA SEQRES 3 B 114 ALA ASP ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SEQRES 4 B 114 SER GLU SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU SEQRES 5 B 114 GLU PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR SEQRES 6 B 114 LYS SER TYR TRP LYS ALA LEU GLY ILE SER PRO PHE HIS SEQRES 7 B 114 GLU HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY SEQRES 8 B 114 PRO ARG ARG TYR THR ILE ALA ALA LEU LEU SER PRO TYR SEQRES 9 B 114 SER TYR SER THR THR ALA VAL VAL THR ASN HET XHF A 201 18 HET XHB A 202 11 HET XHF B 201 18 HET XHB B 202 11 HETNAM XHF 2,6-DIBROMO-4-[(E)-2-(3,5-DIMETHYL-1H-PYRAZOL-4-YL) HETNAM 2 XHF ETHENYL]PHENOL HETNAM XHB 2,4,6-TRIFLUOROBENZALDEHYDE FORMUL 3 XHF 2(C13 H12 BR2 N2 O) FORMUL 4 XHB 2(C7 H3 F3 O) FORMUL 7 HOH *149(H2 O) HELIX 1 AA1 ASP A 74 LEU A 82 1 9 HELIX 2 AA2 ASP B 74 LEU B 82 1 9 SHEET 1 AA1 8 SER A 23 PRO A 24 0 SHEET 2 AA1 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 AA1 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 AA1 8 SER A 115 THR A 123 -1 O THR A 123 N ARG A 104 SHEET 5 AA1 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA1 8 ARG B 104 SER B 112 -1 N SER B 112 O SER B 115 SHEET 7 AA1 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA1 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 AA2 8 GLU A 54 LEU A 55 0 SHEET 2 AA2 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 AA2 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 AA2 8 SER A 115 THR A 123 -1 O THR A 123 N ARG A 104 SHEET 5 AA2 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA2 8 ARG B 104 SER B 112 -1 N SER B 112 O SER B 115 SHEET 7 AA2 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA2 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 AA3 8 TRP A 41 LYS A 48 0 SHEET 2 AA3 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 AA3 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 AA3 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 AA3 8 HIS B 88 ALA B 97 -1 O GLU B 89 N VAL A 94 SHEET 6 AA3 8 GLY B 67 ILE B 73 -1 N ILE B 73 O ALA B 91 SHEET 7 AA3 8 ALA B 29 LYS B 35 -1 N HIS B 31 O GLU B 72 SHEET 8 AA3 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 LINK NZ LYS A 15 C33 XHB A 202 1555 1555 1.43 LINK NZ LYS B 15 C33 XHB B 202 1555 1555 1.44 CRYST1 84.945 42.685 64.272 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015559 0.00000