HEADER SIGNALING PROTEIN 08-NOV-22 8HEP TITLE SOLUTION STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE ANTI-SIGMA FACTOR TITLE 2 RSGI1 FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-SIGMA FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-SIGMA FACTOR; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETIVIBRIO THERMOCELLUS DSM 1313; SOURCE 3 ORGANISM_TAXID: 637887; SOURCE 4 GENE: RSGI1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ACETIVIBRIO THERMOCELLUS DSM 1313; SOURCE 9 ORGANISM_TAXID: 637887; SOURCE 10 GENE: RSGI1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ANTI-SIGMA FACTOR, TRANSCRIPTION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CHEN,Y.FENG REVDAT 2 02-AUG-23 8HEP 1 JRNL REVDAT 1 24-MAY-23 8HEP 0 JRNL AUTH C.CHEN,S.DONG,Z.YU,Y.QIAO,J.LI,X.DING,R.LI,J.LIN,E.A.BAYER, JRNL AUTH 2 Y.J.LIU,Q.CUI,Y.FENG JRNL TITL ESSENTIAL AUTOPROTEOLYSIS OF BACTERIAL ANTI-SIGMA FACTOR JRNL TITL 2 RSGI FOR TRANSMEMBRANE SIGNAL TRANSDUCTION. JRNL REF SCI ADV V. 9 G4846 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37418529 JRNL DOI 10.1126/SCIADV.ADG4846 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033479. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 1 MM [U-100% REMARK 210 13C; U-100% 15N] RSGI1-PD, 0.02 % REMARK 210 W/V DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HBHA(CO)NH; REMARK 210 3D HBHANH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D CCH-TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 2 -65.45 -101.90 REMARK 500 1 ASN B 84 32.14 -87.41 REMARK 500 1 LYS B 89 50.62 -143.76 REMARK 500 1 ASN B 149 -68.39 -154.12 REMARK 500 1 HIS B 171 45.29 -91.14 REMARK 500 2 TYR A 2 -52.96 -143.68 REMARK 500 2 THR B 88 -80.93 -87.44 REMARK 500 2 LYS B 89 63.35 -169.41 REMARK 500 2 ASN B 149 -77.02 -101.64 REMARK 500 3 LEU B 86 41.69 -45.25 REMARK 500 3 LYS B 87 -73.17 -140.71 REMARK 500 3 ASN B 149 -75.88 -109.73 REMARK 500 3 HIS B 173 -62.55 75.72 REMARK 500 3 HIS B 174 104.60 68.08 REMARK 500 4 TYR A 2 -57.01 -137.97 REMARK 500 4 ASP B 68 -85.87 -116.40 REMARK 500 4 GLU B 85 -68.16 78.99 REMARK 500 4 ASN B 149 -68.99 -140.54 REMARK 500 4 HIS B 173 -92.59 60.83 REMARK 500 4 HIS B 174 33.07 -168.64 REMARK 500 5 ASP B 81 39.19 -81.73 REMARK 500 5 LEU B 86 93.04 62.28 REMARK 500 5 LYS B 87 -60.51 -176.60 REMARK 500 5 LYS B 89 96.71 -66.91 REMARK 500 5 ASN B 149 -52.19 -134.94 REMARK 500 5 HIS B 172 69.69 -119.03 REMARK 500 5 HIS B 173 171.49 67.16 REMARK 500 6 TYR A 2 -71.11 -162.37 REMARK 500 6 LEU B 86 -162.16 -109.72 REMARK 500 6 LYS B 87 -31.75 79.62 REMARK 500 6 THR B 88 -56.87 79.40 REMARK 500 6 ASN B 149 -74.44 -127.65 REMARK 500 6 HIS B 171 -60.16 -93.01 REMARK 500 6 HIS B 172 -79.78 69.87 REMARK 500 6 HIS B 173 -44.93 -158.76 REMARK 500 6 HIS B 174 -178.45 -170.33 REMARK 500 7 TYR A 2 -67.40 -101.16 REMARK 500 7 ASP B 68 -82.38 -77.45 REMARK 500 7 GLU B 85 -22.46 76.35 REMARK 500 7 LYS B 89 82.47 178.04 REMARK 500 7 ASN B 149 -68.51 -98.55 REMARK 500 8 ASP B 44 -0.09 79.50 REMARK 500 8 ASP B 68 -79.44 -101.74 REMARK 500 8 GLU B 85 68.78 -100.87 REMARK 500 8 THR B 88 -56.78 -126.58 REMARK 500 8 ASN B 149 -56.39 -128.62 REMARK 500 8 HIS B 171 44.19 -100.07 REMARK 500 8 HIS B 172 4.07 -64.29 REMARK 500 8 HIS B 173 85.83 71.88 REMARK 500 8 HIS B 174 58.84 -93.49 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 10 ARG B 83 0.07 SIDE CHAIN REMARK 500 14 ARG B 27 0.12 SIDE CHAIN REMARK 500 16 ARG B 107 0.09 SIDE CHAIN REMARK 500 17 ARG B 107 0.08 SIDE CHAIN REMARK 500 17 ARG B 124 0.09 SIDE CHAIN REMARK 500 18 ARG B 57 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6IVS RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF RSGI1 REMARK 900 RELATED ID: 36515 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE ANTI-SIGMA REMARK 900 FACTOR RSGI1 FROM CLOSTRIDIUM THERMOCELLUM REMARK 900 RELATED ID: 6IVU RELATED DB: PDB REMARK 900 RELATED ID: 8HEQ RELATED DB: PDB REMARK 900 RELATED ID: 8HER RELATED DB: PDB REMARK 900 RELATED ID: 8HDJ RELATED DB: PDB DBREF 8HEP A 2 10 UNP H6SHX8 H6SHX8_ACETH 87 95 DBREF 8HEP B 11 170 UNP H6SHX8 H6SHX8_ACETH 96 255 SEQADV 8HEP MET A 1 UNP H6SHX8 INITIATING METHIONINE SEQADV 8HEP HIS B 171 UNP H6SHX8 EXPRESSION TAG SEQADV 8HEP HIS B 172 UNP H6SHX8 EXPRESSION TAG SEQADV 8HEP HIS B 173 UNP H6SHX8 EXPRESSION TAG SEQADV 8HEP HIS B 174 UNP H6SHX8 EXPRESSION TAG SEQADV 8HEP HIS B 175 UNP H6SHX8 EXPRESSION TAG SEQADV 8HEP HIS B 176 UNP H6SHX8 EXPRESSION TAG SEQRES 1 A 10 MET TYR GLY TYR ILE CYS VAL ASP ILE ASN SEQRES 1 B 166 PRO SER VAL GLU LEU VAL ILE ASP GLU THR CYS ARG VAL SEQRES 2 B 166 LEU GLU VAL ARG PRO GLN ASN LYS ASP GLY GLU GLN LEU SEQRES 3 B 166 ILE SER GLY LEU GLU LEU LEU ASP LYS ASN VAL GLU ASP SEQRES 4 B 166 VAL VAL TYR GLU LEU ILE ASN ARG SER ILE SER PHE GLY SEQRES 5 B 166 PHE VAL LYS ALA ASP ASP ASN ARG LYS ILE VAL LEU ILE SEQRES 6 B 166 SER GLY ALA LEU ASN ASP LYS ARG ASN GLU LEU LYS THR SEQRES 7 B 166 LYS LYS GLU ASN ASP GLU ALA GLU LEU THR GLU LEU LEU SEQRES 8 B 166 ASP ASN ILE LYS ALA ARG VAL ASP ARG ILE ASP ASN ILE SEQRES 9 B 166 LYS VAL ARG THR ILE THR ALA THR SER ARG GLU ARG LYS SEQRES 10 B 166 ASP ALA LEU LYS TYR GLY LEU SER MET GLY LYS TYR CYS SEQRES 11 B 166 LEU TYR LEU GLU ALA GLN GLU LEU ASN GLY SER ILE THR SEQRES 12 B 166 ILE ASP GLU VAL HIS ASP MET SER ILE SER ASP MET ILE SEQRES 13 B 166 GLU LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASN B 30 SER B 38 1 9 HELIX 2 AA2 ASN B 46 PHE B 61 1 16 HELIX 3 AA3 LYS B 82 LEU B 86 5 5 HELIX 4 AA4 LYS B 89 ASP B 109 1 21 HELIX 5 AA5 THR B 122 GLY B 133 1 12 HELIX 6 AA6 SER B 135 ASN B 149 1 15 HELIX 7 AA7 THR B 153 MET B 160 1 8 HELIX 8 AA8 SER B 161 HIS B 171 1 11 SHEET 1 AA1 5 VAL B 23 PRO B 28 0 SHEET 2 AA1 5 SER B 12 ILE B 17 -1 N GLU B 14 O ARG B 27 SHEET 3 AA1 5 GLY A 3 ILE A 9 -1 N ILE A 5 O LEU B 15 SHEET 4 AA1 5 ILE B 72 LEU B 79 -1 O LEU B 74 N ASP A 8 SHEET 5 AA1 5 LYS B 115 ALA B 121 1 O ARG B 117 N ILE B 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1