HEADER SIGNALING PROTEIN 08-NOV-22 8HER TITLE SOLUTION STRUCTURE OF THE PERIPLASMIC DOMAIN OF RSGI6 FROM CLOSTRIDIUM TITLE 2 THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-SIGMA FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-SIGMA FACTOR; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETIVIBRIO THERMOCELLUS DSM 1313; SOURCE 3 ORGANISM_TAXID: 637887; SOURCE 4 GENE: RSGI6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ACETIVIBRIO THERMOCELLUS DSM 1313; SOURCE 9 ORGANISM_TAXID: 637887; SOURCE 10 GENE: RSGI6; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ANTI-SIGMA FACTOR; TRANSCRIPTION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CHEN,Y.FENG REVDAT 3 15-MAY-24 8HER 1 REMARK REVDAT 2 02-AUG-23 8HER 1 JRNL REVDAT 1 24-MAY-23 8HER 0 JRNL AUTH C.CHEN,S.DONG,Z.YU,Y.QIAO,J.LI,X.DING,R.LI,J.LIN,E.A.BAYER, JRNL AUTH 2 Y.J.LIU,Q.CUI,Y.FENG JRNL TITL ESSENTIAL AUTOPROTEOLYSIS OF BACTERIAL ANTI-SIGMA FACTOR JRNL TITL 2 RSGI FOR TRANSMEMBRANE SIGNAL TRANSDUCTION. JRNL REF SCI ADV V. 9 G4846 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37418529 JRNL DOI 10.1126/SCIADV.ADG4846 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033480. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 RSGI6-PD, 50 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 0.02 % REMARK 210 W/V DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HBHA(CO)NH; REMARK 210 3D HBHANH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D CCH-TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 2 -76.20 -145.74 REMARK 500 1 GLU B 84 -179.36 65.59 REMARK 500 2 TYR A 2 -77.64 168.16 REMARK 500 2 GLU B 44 46.64 -95.59 REMARK 500 2 LEU B 80 33.14 -96.27 REMARK 500 2 GLU B 87 -91.81 60.68 REMARK 500 2 ASN B 88 6.30 -152.99 REMARK 500 3 TYR A 2 -86.92 69.20 REMARK 500 3 LEU B 80 33.98 -96.71 REMARK 500 3 GLU B 87 142.35 70.60 REMARK 500 3 ASN B 88 45.68 -105.32 REMARK 500 3 HIS B 173 75.11 -101.21 REMARK 500 4 TYR A 2 -82.41 -153.17 REMARK 500 4 GLU B 44 43.91 -101.89 REMARK 500 4 LEU B 80 73.92 -110.79 REMARK 500 5 TYR A 2 -77.14 158.80 REMARK 500 5 LEU B 80 -106.50 -106.72 REMARK 500 6 TYR A 2 -92.01 -128.33 REMARK 500 6 LEU B 80 -103.04 -97.38 REMARK 500 6 GLU B 84 -82.73 56.49 REMARK 500 7 TYR A 2 -92.09 71.56 REMARK 500 7 GLU B 38 107.00 -58.66 REMARK 500 7 LEU B 80 52.56 -95.71 REMARK 500 8 TYR A 2 -83.56 -119.03 REMARK 500 8 SER B 86 -70.81 -100.08 REMARK 500 9 TYR A 2 -72.32 -166.89 REMARK 500 9 HIS B 173 110.58 78.19 REMARK 500 10 TYR A 2 -86.11 61.79 REMARK 500 10 GLU B 44 45.29 -98.88 REMARK 500 10 ALA B 82 39.23 -140.99 REMARK 500 10 SER B 86 15.62 -159.90 REMARK 500 10 ASN B 149 61.45 64.51 REMARK 500 10 ASN B 151 33.68 -84.14 REMARK 500 10 HIS B 171 40.11 -97.36 REMARK 500 10 HIS B 174 81.54 75.34 REMARK 500 11 TYR A 2 -62.01 -98.85 REMARK 500 11 ASN B 88 -0.99 67.29 REMARK 500 12 TYR A 2 -82.12 -137.87 REMARK 500 12 GLU B 84 144.58 178.49 REMARK 500 13 TYR A 2 -79.76 -45.64 REMARK 500 13 LEU B 80 75.59 -101.91 REMARK 500 13 LYS B 81 63.31 -108.40 REMARK 500 13 GLU B 84 -85.51 65.01 REMARK 500 14 TYR A 2 -66.77 -159.47 REMARK 500 14 LEU B 80 73.66 -104.01 REMARK 500 14 GLU B 84 -69.49 64.76 REMARK 500 14 ASN B 149 60.90 63.19 REMARK 500 15 TYR A 2 -81.57 -175.24 REMARK 500 16 TYR A 2 -81.10 -122.00 REMARK 500 16 GLU B 44 44.03 -100.33 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 17 ARG B 117 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8HEP RELATED DB: PDB REMARK 900 RSGI1-PD REMARK 900 RELATED ID: 8HEQ RELATED DB: PDB REMARK 900 RSGI2-PD REMARK 900 RELATED ID: 8HDJ RELATED DB: PDB REMARK 900 RSGI2-PD CRYSTAL STRUCTURE REMARK 900 RELATED ID: 36516 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE PERIPLASMIC DOMAIN OF RSGI6 FROM REMARK 900 CLOSTRIDIUM THERMOCELLUM REMARK 900 RELATED ID: 6IVS RELATED DB: PDB REMARK 900 RELATED ID: 6IVU RELATED DB: PDB DBREF 8HER A 2 10 UNP H6SHY0 H6SHY0_ACETH 86 94 DBREF 8HER B 11 168 UNP H6SHY0 H6SHY0_ACETH 95 252 SEQADV 8HER MET A 1 UNP H6SHY0 INITIATING METHIONINE SEQADV 8HER LEU B 169 UNP H6SHY0 EXPRESSION TAG SEQADV 8HER GLU B 170 UNP H6SHY0 EXPRESSION TAG SEQADV 8HER HIS B 171 UNP H6SHY0 EXPRESSION TAG SEQADV 8HER HIS B 172 UNP H6SHY0 EXPRESSION TAG SEQADV 8HER HIS B 173 UNP H6SHY0 EXPRESSION TAG SEQADV 8HER HIS B 174 UNP H6SHY0 EXPRESSION TAG SEQADV 8HER HIS B 175 UNP H6SHY0 EXPRESSION TAG SEQADV 8HER HIS B 176 UNP H6SHY0 EXPRESSION TAG SEQRES 1 A 10 MET TYR ALA TYR VAL GLY ILE ASP ILE ASN SEQRES 1 B 166 PRO SER ILE GLU LEU TRP ILE ASN TYR ASN ASN LYS ILE SEQRES 2 B 166 ALA GLU ALA LYS ALA LEU ASN GLY ASP ALA GLU THR VAL SEQRES 3 B 166 LEU GLU GLY LEU GLU LEU LYS GLU LYS THR VAL ALA GLU SEQRES 4 B 166 ALA VAL ASN GLU ILE VAL GLN LYS SER MET GLU LEU GLY SEQRES 5 B 166 PHE ILE SER ARG GLU LYS GLU ASN ILE ILE LEU ILE SER SEQRES 6 B 166 THR ALA CYS ASP LEU LYS ALA GLY GLU GLY SER GLU ASN SEQRES 7 B 166 LYS ASP VAL GLN ASN LYS ILE GLY GLN LEU PHE ASP ASP SEQRES 8 B 166 VAL ASN LYS ALA VAL SER ASP LEU LYS ASN SER GLY ILE SEQRES 9 B 166 THR THR ARG ILE LEU ASN LEU THR LEU GLU GLU ARG GLU SEQRES 10 B 166 SER SER LYS GLU GLU ASN ILE SER MET GLY ARG TYR ALA SEQRES 11 B 166 VAL TYR LEU LYS ALA LYS GLU GLN ASN VAL ASN LEU THR SEQRES 12 B 166 ILE ASP GLU ILE LYS ASP ALA ASP LEU LEU GLU LEU ILE SEQRES 13 B 166 ALA LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASN B 30 GLU B 38 1 9 HELIX 2 AA2 THR B 46 LEU B 61 1 16 HELIX 3 AA3 ASN B 88 LYS B 110 1 23 HELIX 4 AA4 ASN B 111 GLY B 113 5 3 HELIX 5 AA5 THR B 122 GLU B 132 1 11 HELIX 6 AA6 SER B 135 GLN B 148 1 14 HELIX 7 AA7 THR B 153 ALA B 160 1 8 HELIX 8 AA8 ASP B 161 HIS B 173 1 13 SHEET 1 AA1 5 ILE B 23 ALA B 28 0 SHEET 2 AA1 5 SER B 12 ILE B 17 -1 N TRP B 16 O GLU B 25 SHEET 3 AA1 5 ALA A 3 ILE A 9 -1 N ALA A 3 O ILE B 17 SHEET 4 AA1 5 ILE B 71 CYS B 78 -1 O SER B 75 N GLY A 6 SHEET 5 AA1 5 THR B 115 LEU B 121 1 O LEU B 121 N THR B 76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1