HEADER RNA BINDING PROTEIN 21-NOV-22 8HIO TITLE CRYO-EM STRUCTURE OF THE CAS12M2-CRRNA BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (56-MER); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAS12M2; COMPND 7 CHAIN: A, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM MUCOGENICUM; SOURCE 3 ORGANISM_TAXID: 56689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM MUCOGENICUM; SOURCE 8 ORGANISM_TAXID: 56689; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRISPR-CAS, RNA BINDING PROTEIN-DNA COMPLEX, RNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR N.S.OMURA,R.NAKAGAWA,Y.W.WU,C.SUDFELD,V.R.WARREN,H.HIRANO, AUTHOR 2 T.KUSAKIZAKO,Y.KISE,H.G.J.LEBBINK,Y.ITOH,V.D.J.OOST,O.NUREKI REVDAT 4 30-AUG-23 8HIO 1 JRNL REVDAT 3 09-AUG-23 8HIO 1 JRNL REVDAT 2 19-JUL-23 8HIO 1 JRNL SSBOND REVDAT 1 12-APR-23 8HIO 0 JRNL AUTH S.N.OMURA,R.NAKAGAWA,C.SUDFELD,R.VILLEGAS WARREN,W.Y.WU, JRNL AUTH 2 H.HIRANO,C.LAFFEBER,T.KUSAKIZAKO,Y.KISE,J.H.G.LEBBINK, JRNL AUTH 3 Y.ITOH,J.VAN DER OOST,O.NUREKI JRNL TITL MECHANISTIC AND EVOLUTIONARY INSIGHTS INTO A TYPE V-M JRNL TITL 2 CRISPR-CAS EFFECTOR ENZYME. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 1172 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 37460897 JRNL DOI 10.1038/S41594-023-01042-3 REMARK 2 REMARK 2 RESOLUTION. 3.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.730 REMARK 3 NUMBER OF PARTICLES : 115501 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8HIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033637. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CAS12M2-CRRNA; CRRNA; CAS12M2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5500.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G B -35 REMARK 465 U B -34 REMARK 465 G B -33 REMARK 465 U B -32 REMARK 465 G B 16 REMARK 465 U B 17 REMARK 465 G B 18 REMARK 465 G B 19 REMARK 465 C B 20 REMARK 465 LYS A 87 REMARK 465 LYS A 88 REMARK 465 ILE A 89 REMARK 465 SER A 90 REMARK 465 SER A 488 REMARK 465 VAL A 489 REMARK 465 ALA A 490 REMARK 465 GLU A 491 REMARK 465 LEU A 492 REMARK 465 SER A 493 REMARK 465 ALA A 494 REMARK 465 ARG A 495 REMARK 465 ALA A 496 REMARK 465 MET A 497 REMARK 465 GLU A 498 REMARK 465 ARG A 499 REMARK 465 THR A 500 REMARK 465 GLU A 501 REMARK 465 LEU A 502 REMARK 465 PRO A 503 REMARK 465 THR A 504 REMARK 465 GLU A 505 REMARK 465 VAL A 506 REMARK 465 GLN A 507 REMARK 465 GLN A 508 REMARK 465 PRO A 593 REMARK 465 SER A 594 REMARK 465 ASN A 595 REMARK 465 PRO A 596 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 THR D 3 REMARK 465 MET D 4 REMARK 465 THR D 5 REMARK 465 VAL D 6 REMARK 465 HIS D 7 REMARK 465 THR D 8 REMARK 465 MET D 9 REMARK 465 GLY D 10 REMARK 465 VAL D 11 REMARK 465 HIS D 12 REMARK 465 TYR D 13 REMARK 465 LYS D 14 REMARK 465 TRP D 15 REMARK 465 GLN D 16 REMARK 465 ILE D 17 REMARK 465 ALA D 65 REMARK 465 ALA D 66 REMARK 465 GLU D 67 REMARK 465 ALA D 68 REMARK 465 ASP D 69 REMARK 465 ALA D 70 REMARK 465 VAL D 71 REMARK 465 ALA D 72 REMARK 465 LEU D 73 REMARK 465 SER D 74 REMARK 465 GLU D 75 REMARK 465 ARG D 76 REMARK 465 VAL D 77 REMARK 465 LYS D 78 REMARK 465 GLN D 79 REMARK 465 ALA D 80 REMARK 465 ARG D 81 REMARK 465 ILE D 82 REMARK 465 GLU D 83 REMARK 465 ALA D 84 REMARK 465 ARG D 85 REMARK 465 SER D 86 REMARK 465 LYS D 87 REMARK 465 LYS D 88 REMARK 465 ILE D 89 REMARK 465 SER D 90 REMARK 465 THR D 91 REMARK 465 GLU D 92 REMARK 465 LEU D 93 REMARK 465 THR D 94 REMARK 465 SER D 189 REMARK 465 GLY D 190 REMARK 465 THR D 191 REMARK 465 ILE D 192 REMARK 465 ALA D 193 REMARK 465 VAL D 194 REMARK 465 GLN D 195 REMARK 465 LEU D 196 REMARK 465 GLN D 197 REMARK 465 ARG D 198 REMARK 465 GLN D 199 REMARK 465 ALA D 200 REMARK 465 GLY D 201 REMARK 465 ALA D 202 REMARK 465 PRO D 203 REMARK 465 PRO D 204 REMARK 465 ARG D 205 REMARK 465 THR D 206 REMARK 465 PRO D 207 REMARK 465 MET D 208 REMARK 465 VAL D 209 REMARK 465 LEU D 210 REMARK 465 ALA D 211 REMARK 465 ASP D 212 REMARK 465 GLU D 213 REMARK 465 ALA D 214 REMARK 465 GLY D 215 REMARK 465 LYS D 216 REMARK 465 TYR D 217 REMARK 465 ARG D 218 REMARK 465 ASN D 219 REMARK 465 VAL D 220 REMARK 465 LEU D 221 REMARK 465 HIS D 222 REMARK 465 ILE D 223 REMARK 465 PRO D 224 REMARK 465 GLY D 225 REMARK 465 TRP D 226 REMARK 465 THR D 227 REMARK 465 ASP D 228 REMARK 465 PRO D 229 REMARK 465 ASP D 230 REMARK 465 VAL D 231 REMARK 465 TRP D 232 REMARK 465 GLU D 233 REMARK 465 GLN D 234 REMARK 465 MET D 235 REMARK 465 THR D 236 REMARK 465 ARG D 237 REMARK 465 SER D 238 REMARK 465 GLN D 239 REMARK 465 CYS D 240 REMARK 465 ARG D 241 REMARK 465 GLN D 242 REMARK 465 SER D 243 REMARK 465 GLY D 244 REMARK 465 ARG D 245 REMARK 465 VAL D 246 REMARK 465 THR D 247 REMARK 465 VAL D 248 REMARK 465 ARG D 249 REMARK 465 MET D 250 REMARK 465 ILE D 262 REMARK 465 ASP D 263 REMARK 465 LEU D 264 REMARK 465 PRO D 265 REMARK 465 VAL D 266 REMARK 465 GLN D 267 REMARK 465 VAL D 268 REMARK 465 HIS D 269 REMARK 465 ARG D 270 REMARK 465 TRP D 271 REMARK 465 LEU D 272 REMARK 465 PRO D 273 REMARK 465 ALA D 274 REMARK 465 ASP D 275 REMARK 465 ALA D 276 REMARK 465 ASP D 277 REMARK 465 ILE D 278 REMARK 465 THR D 279 REMARK 465 GLY D 280 REMARK 465 ALA D 281 REMARK 465 GLU D 282 REMARK 465 LEU D 283 REMARK 465 VAL D 284 REMARK 465 VAL D 285 REMARK 465 THR D 286 REMARK 465 ARG D 287 REMARK 465 VAL D 288 REMARK 465 ALA D 289 REMARK 465 GLY D 290 REMARK 465 ILE D 291 REMARK 465 TYR D 292 REMARK 465 ARG D 293 REMARK 465 ALA D 294 REMARK 465 LYS D 295 REMARK 465 LEU D 296 REMARK 465 CYS D 297 REMARK 465 VAL D 298 REMARK 465 THR D 299 REMARK 465 ALA D 300 REMARK 465 ARG D 301 REMARK 465 ILE D 302 REMARK 465 GLY D 303 REMARK 465 ASP D 304 REMARK 465 THR D 305 REMARK 465 GLU D 306 REMARK 465 PRO D 307 REMARK 465 VAL D 308 REMARK 465 THR D 309 REMARK 465 SER D 310 REMARK 465 GLY D 311 REMARK 465 PRO D 312 REMARK 465 THR D 313 REMARK 465 VAL D 314 REMARK 465 ALA D 315 REMARK 465 LEU D 316 REMARK 465 HIS D 317 REMARK 465 LEU D 318 REMARK 465 GLY D 319 REMARK 465 TRP D 320 REMARK 465 ARG D 321 REMARK 465 SER D 322 REMARK 465 THR D 323 REMARK 465 GLU D 324 REMARK 465 GLU D 325 REMARK 465 GLY D 326 REMARK 465 THR D 327 REMARK 465 ALA D 328 REMARK 465 VAL D 329 REMARK 465 ALA D 330 REMARK 465 THR D 331 REMARK 465 TRP D 332 REMARK 465 ARG D 333 REMARK 465 SER D 334 REMARK 465 ASP D 335 REMARK 465 ALA D 336 REMARK 465 PRO D 337 REMARK 465 LEU D 338 REMARK 465 ASP D 339 REMARK 465 ILE D 340 REMARK 465 PRO D 341 REMARK 465 PHE D 342 REMARK 465 GLY D 343 REMARK 465 LEU D 344 REMARK 465 ARG D 345 REMARK 465 THR D 346 REMARK 465 VAL D 347 REMARK 465 MET D 348 REMARK 465 ARG D 349 REMARK 465 VAL D 350 REMARK 465 ASP D 351 REMARK 465 ALA D 352 REMARK 465 ALA D 353 REMARK 465 GLY D 354 REMARK 465 THR D 355 REMARK 465 SER D 356 REMARK 465 GLY D 357 REMARK 465 ILE D 358 REMARK 465 ILE D 359 REMARK 465 VAL D 360 REMARK 465 VAL D 361 REMARK 465 PRO D 362 REMARK 465 ALA D 363 REMARK 465 THR D 364 REMARK 465 ILE D 365 REMARK 465 GLU D 366 REMARK 465 ARG D 367 REMARK 465 ARG D 368 REMARK 465 LEU D 369 REMARK 465 THR D 370 REMARK 465 ARG D 371 REMARK 465 THR D 372 REMARK 465 GLU D 373 REMARK 465 ASN D 374 REMARK 465 ILE D 375 REMARK 465 ALA D 376 REMARK 465 SER D 377 REMARK 465 SER D 378 REMARK 465 ARG D 379 REMARK 465 SER D 380 REMARK 465 LEU D 381 REMARK 465 ALA D 382 REMARK 465 LEU D 383 REMARK 465 ASP D 384 REMARK 465 ALA D 385 REMARK 465 LEU D 386 REMARK 465 ARG D 387 REMARK 465 ASP D 388 REMARK 465 LYS D 389 REMARK 465 VAL D 390 REMARK 465 VAL D 391 REMARK 465 GLY D 392 REMARK 465 TRP D 393 REMARK 465 LEU D 394 REMARK 465 SER D 395 REMARK 465 ASP D 396 REMARK 465 ASN D 397 REMARK 465 ASP D 398 REMARK 465 ALA D 399 REMARK 465 PRO D 400 REMARK 465 THR D 401 REMARK 465 TYR D 402 REMARK 465 ARG D 403 REMARK 465 ASP D 404 REMARK 465 ALA D 405 REMARK 465 PRO D 406 REMARK 465 LEU D 407 REMARK 465 GLU D 408 REMARK 465 ALA D 409 REMARK 465 ALA D 410 REMARK 465 THR D 411 REMARK 465 VAL D 412 REMARK 465 LYS D 413 REMARK 465 GLN D 414 REMARK 465 TRP D 415 REMARK 465 LYS D 416 REMARK 465 SER D 417 REMARK 465 PRO D 418 REMARK 465 GLN D 419 REMARK 465 ARG D 420 REMARK 465 PHE D 421 REMARK 465 ALA D 422 REMARK 465 SER D 423 REMARK 465 LEU D 424 REMARK 465 ALA D 425 REMARK 465 HIS D 426 REMARK 465 ALA D 427 REMARK 465 TRP D 428 REMARK 465 LYS D 429 REMARK 465 ASP D 430 REMARK 465 ASN D 431 REMARK 465 GLY D 432 REMARK 465 THR D 433 REMARK 465 GLU D 434 REMARK 465 ILE D 435 REMARK 465 SER D 436 REMARK 465 ASP D 437 REMARK 465 ILE D 438 REMARK 465 LEU D 439 REMARK 465 TRP D 440 REMARK 465 ALA D 441 REMARK 465 TRP D 442 REMARK 465 PHE D 443 REMARK 465 SER D 444 REMARK 465 LEU D 445 REMARK 465 ASP D 446 REMARK 465 ARG D 447 REMARK 465 LYS D 448 REMARK 465 GLN D 449 REMARK 465 TRP D 450 REMARK 465 ALA D 451 REMARK 465 GLN D 452 REMARK 465 GLN D 453 REMARK 465 GLU D 454 REMARK 465 ASN D 455 REMARK 465 GLY D 456 REMARK 465 ARG D 457 REMARK 465 ARG D 458 REMARK 465 LYS D 459 REMARK 465 ALA D 460 REMARK 465 LEU D 461 REMARK 465 GLY D 462 REMARK 465 HIS D 463 REMARK 465 ARG D 464 REMARK 465 ASP D 465 REMARK 465 ASP D 466 REMARK 465 LEU D 467 REMARK 465 TYR D 468 REMARK 465 ARG D 469 REMARK 465 GLN D 470 REMARK 465 ILE D 471 REMARK 465 ALA D 472 REMARK 465 ALA D 473 REMARK 465 VAL D 474 REMARK 465 ILE D 475 REMARK 465 SER D 476 REMARK 465 ASP D 477 REMARK 465 GLN D 478 REMARK 465 ALA D 479 REMARK 465 GLY D 480 REMARK 465 HIS D 481 REMARK 465 VAL D 482 REMARK 465 LEU D 483 REMARK 465 VAL D 484 REMARK 465 ASP D 485 REMARK 465 ASP D 486 REMARK 465 THR D 487 REMARK 465 SER D 488 REMARK 465 VAL D 489 REMARK 465 ALA D 490 REMARK 465 GLU D 491 REMARK 465 LEU D 492 REMARK 465 SER D 493 REMARK 465 ALA D 494 REMARK 465 ARG D 495 REMARK 465 ALA D 496 REMARK 465 MET D 497 REMARK 465 GLU D 498 REMARK 465 ARG D 499 REMARK 465 THR D 500 REMARK 465 GLU D 501 REMARK 465 LEU D 502 REMARK 465 PRO D 503 REMARK 465 THR D 504 REMARK 465 GLU D 505 REMARK 465 VAL D 506 REMARK 465 GLN D 507 REMARK 465 GLN D 508 REMARK 465 LYS D 509 REMARK 465 ILE D 510 REMARK 465 ASP D 511 REMARK 465 ARG D 512 REMARK 465 ARG D 513 REMARK 465 ARG D 514 REMARK 465 ASP D 515 REMARK 465 HIS D 516 REMARK 465 ALA D 517 REMARK 465 ALA D 518 REMARK 465 PRO D 519 REMARK 465 GLY D 520 REMARK 465 GLY D 521 REMARK 465 LEU D 522 REMARK 465 ARG D 523 REMARK 465 ALA D 524 REMARK 465 SER D 525 REMARK 465 VAL D 526 REMARK 465 VAL D 527 REMARK 465 ALA D 528 REMARK 465 ALA D 529 REMARK 465 MET D 530 REMARK 465 THR D 531 REMARK 465 ARG D 532 REMARK 465 ASP D 533 REMARK 465 GLY D 534 REMARK 465 VAL D 535 REMARK 465 PRO D 536 REMARK 465 VAL D 537 REMARK 465 THR D 538 REMARK 465 ILE D 539 REMARK 465 VAL D 540 REMARK 465 ALA D 541 REMARK 465 ALA D 542 REMARK 465 ALA D 543 REMARK 465 ASP D 544 REMARK 465 PHE D 545 REMARK 465 THR D 546 REMARK 465 ARG D 547 REMARK 465 THR D 548 REMARK 465 HIS D 549 REMARK 465 SER D 550 REMARK 465 ARG D 551 REMARK 465 CYS D 552 REMARK 465 GLY D 553 REMARK 465 HIS D 554 REMARK 465 VAL D 555 REMARK 465 ASN D 556 REMARK 465 PRO D 557 REMARK 465 ALA D 558 REMARK 465 ASP D 559 REMARK 465 ASP D 560 REMARK 465 ARG D 561 REMARK 465 TYR D 562 REMARK 465 LEU D 563 REMARK 465 SER D 564 REMARK 465 ASN D 565 REMARK 465 PRO D 566 REMARK 465 VAL D 567 REMARK 465 ARG D 568 REMARK 465 CYS D 569 REMARK 465 ASP D 570 REMARK 465 GLY D 571 REMARK 465 CYS D 572 REMARK 465 GLY D 573 REMARK 465 ALA D 574 REMARK 465 MET D 575 REMARK 465 TYR D 576 REMARK 465 ASP D 577 REMARK 465 GLN D 578 REMARK 465 ASP D 579 REMARK 465 ARG D 580 REMARK 465 SER D 581 REMARK 465 PHE D 582 REMARK 465 VAL D 583 REMARK 465 THR D 584 REMARK 465 LEU D 585 REMARK 465 MET D 586 REMARK 465 LEU D 587 REMARK 465 ARG D 588 REMARK 465 ALA D 589 REMARK 465 ALA D 590 REMARK 465 THR D 591 REMARK 465 ALA D 592 REMARK 465 PRO D 593 REMARK 465 SER D 594 REMARK 465 ASN D 595 REMARK 465 PRO D 596 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 G B -7 NZ LYS A 14 2.11 REMARK 500 OD2 ASP A 466 NE2 GLN A 470 2.15 REMARK 500 O TRP A 428 OG SER A 436 2.15 REMARK 500 N4 C B -31 OG SER A 444 2.16 REMARK 500 NH1 ARG A 464 O HIS A 516 2.18 REMARK 500 O ILE A 435 N LEU A 439 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 177 118.41 -38.85 REMARK 500 TRP A 320 32.94 -150.59 REMARK 500 ALA A 518 74.08 52.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B -22 OP1 REMARK 620 2 G B -22 OP2 65.5 REMARK 620 3 C B -21 OP2 91.0 118.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 549 ND1 REMARK 620 2 CYS A 552 SG 96.2 REMARK 620 3 CYS A 569 SG 116.8 75.3 REMARK 620 4 CYS A 572 SG 119.5 143.6 81.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34824 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE CAS12M2-CRRNA-TARGET DNA TERNARY COMPLEX REMARK 900 INTERMEDIATE STATE DBREF 8HIO B -35 20 PDB 8HIO 8HIO -35 20 DBREF 8HIO A 1 596 PDB 8HIO 8HIO 1 596 DBREF 8HIO D 1 596 PDB 8HIO 8HIO 1 596 SEQRES 1 B 56 G U G U C A U A G C C C A SEQRES 2 B 56 G C U U G G C G G G C G A SEQRES 3 B 56 A G G C C A A G A C G G A SEQRES 4 B 56 G A U G A G G U G C G C G SEQRES 5 B 56 U G G C SEQRES 1 A 596 MET THR THR MET THR VAL HIS THR MET GLY VAL HIS TYR SEQRES 2 A 596 LYS TRP GLN ILE PRO GLU VAL LEU ARG GLN GLN LEU TRP SEQRES 3 A 596 LEU ALA HIS ASN LEU ARG GLU ASP LEU VAL SER LEU GLN SEQRES 4 A 596 LEU ALA TYR ASP ASP ASP LEU LYS ALA ILE TRP SER SER SEQRES 5 A 596 TYR PRO ASP VAL ALA GLN ALA GLU ASP THR MET ALA ALA SEQRES 6 A 596 ALA GLU ALA ASP ALA VAL ALA LEU SER GLU ARG VAL LYS SEQRES 7 A 596 GLN ALA ARG ILE GLU ALA ARG SER LYS LYS ILE SER THR SEQRES 8 A 596 GLU LEU THR GLN GLN LEU ARG ASP ALA LYS LYS ARG LEU SEQRES 9 A 596 LYS ASP ALA ARG GLN ALA ARG ARG ASP ALA ILE ALA VAL SEQRES 10 A 596 VAL LYS ASP ASP ALA ALA GLU ARG ARG LYS ALA ARG SER SEQRES 11 A 596 ASP GLN LEU ALA ALA ASP GLN LYS ALA LEU TYR GLY GLN SEQRES 12 A 596 TYR CYS ARG ASP GLY ASP LEU TYR TRP ALA SER PHE ASN SEQRES 13 A 596 THR VAL LEU ASP HIS HIS LYS THR ALA VAL LYS ARG ILE SEQRES 14 A 596 ALA ALA GLN ARG ALA SER GLY LYS PRO ALA THR LEU ARG SEQRES 15 A 596 HIS HIS ARG PHE ASP GLY SER GLY THR ILE ALA VAL GLN SEQRES 16 A 596 LEU GLN ARG GLN ALA GLY ALA PRO PRO ARG THR PRO MET SEQRES 17 A 596 VAL LEU ALA ASP GLU ALA GLY LYS TYR ARG ASN VAL LEU SEQRES 18 A 596 HIS ILE PRO GLY TRP THR ASP PRO ASP VAL TRP GLU GLN SEQRES 19 A 596 MET THR ARG SER GLN CYS ARG GLN SER GLY ARG VAL THR SEQRES 20 A 596 VAL ARG MET ARG CYS GLY SER THR ASP GLY GLN PRO GLN SEQRES 21 A 596 TRP ILE ASP LEU PRO VAL GLN VAL HIS ARG TRP LEU PRO SEQRES 22 A 596 ALA ASP ALA ASP ILE THR GLY ALA GLU LEU VAL VAL THR SEQRES 23 A 596 ARG VAL ALA GLY ILE TYR ARG ALA LYS LEU CYS VAL THR SEQRES 24 A 596 ALA ARG ILE GLY ASP THR GLU PRO VAL THR SER GLY PRO SEQRES 25 A 596 THR VAL ALA LEU HIS LEU GLY TRP ARG SER THR GLU GLU SEQRES 26 A 596 GLY THR ALA VAL ALA THR TRP ARG SER ASP ALA PRO LEU SEQRES 27 A 596 ASP ILE PRO PHE GLY LEU ARG THR VAL MET ARG VAL ASP SEQRES 28 A 596 ALA ALA GLY THR SER GLY ILE ILE VAL VAL PRO ALA THR SEQRES 29 A 596 ILE GLU ARG ARG LEU THR ARG THR GLU ASN ILE ALA SER SEQRES 30 A 596 SER ARG SER LEU ALA LEU ASP ALA LEU ARG ASP LYS VAL SEQRES 31 A 596 VAL GLY TRP LEU SER ASP ASN ASP ALA PRO THR TYR ARG SEQRES 32 A 596 ASP ALA PRO LEU GLU ALA ALA THR VAL LYS GLN TRP LYS SEQRES 33 A 596 SER PRO GLN ARG PHE ALA SER LEU ALA HIS ALA TRP LYS SEQRES 34 A 596 ASP ASN GLY THR GLU ILE SER ASP ILE LEU TRP ALA TRP SEQRES 35 A 596 PHE SER LEU ASP ARG LYS GLN TRP ALA GLN GLN GLU ASN SEQRES 36 A 596 GLY ARG ARG LYS ALA LEU GLY HIS ARG ASP ASP LEU TYR SEQRES 37 A 596 ARG GLN ILE ALA ALA VAL ILE SER ASP GLN ALA GLY HIS SEQRES 38 A 596 VAL LEU VAL ASP ASP THR SER VAL ALA GLU LEU SER ALA SEQRES 39 A 596 ARG ALA MET GLU ARG THR GLU LEU PRO THR GLU VAL GLN SEQRES 40 A 596 GLN LYS ILE ASP ARG ARG ARG ASP HIS ALA ALA PRO GLY SEQRES 41 A 596 GLY LEU ARG ALA SER VAL VAL ALA ALA MET THR ARG ASP SEQRES 42 A 596 GLY VAL PRO VAL THR ILE VAL ALA ALA ALA ASP PHE THR SEQRES 43 A 596 ARG THR HIS SER ARG CYS GLY HIS VAL ASN PRO ALA ASP SEQRES 44 A 596 ASP ARG TYR LEU SER ASN PRO VAL ARG CYS ASP GLY CYS SEQRES 45 A 596 GLY ALA MET TYR ASP GLN ASP ARG SER PHE VAL THR LEU SEQRES 46 A 596 MET LEU ARG ALA ALA THR ALA PRO SER ASN PRO SEQRES 1 D 596 MET THR THR MET THR VAL HIS THR MET GLY VAL HIS TYR SEQRES 2 D 596 LYS TRP GLN ILE PRO GLU VAL LEU ARG GLN GLN LEU TRP SEQRES 3 D 596 LEU ALA HIS ASN LEU ARG GLU ASP LEU VAL SER LEU GLN SEQRES 4 D 596 LEU ALA TYR ASP ASP ASP LEU LYS ALA ILE TRP SER SER SEQRES 5 D 596 TYR PRO ASP VAL ALA GLN ALA GLU ASP THR MET ALA ALA SEQRES 6 D 596 ALA GLU ALA ASP ALA VAL ALA LEU SER GLU ARG VAL LYS SEQRES 7 D 596 GLN ALA ARG ILE GLU ALA ARG SER LYS LYS ILE SER THR SEQRES 8 D 596 GLU LEU THR GLN GLN LEU ARG ASP ALA LYS LYS ARG LEU SEQRES 9 D 596 LYS ASP ALA ARG GLN ALA ARG ARG ASP ALA ILE ALA VAL SEQRES 10 D 596 VAL LYS ASP ASP ALA ALA GLU ARG ARG LYS ALA ARG SER SEQRES 11 D 596 ASP GLN LEU ALA ALA ASP GLN LYS ALA LEU TYR GLY GLN SEQRES 12 D 596 TYR CYS ARG ASP GLY ASP LEU TYR TRP ALA SER PHE ASN SEQRES 13 D 596 THR VAL LEU ASP HIS HIS LYS THR ALA VAL LYS ARG ILE SEQRES 14 D 596 ALA ALA GLN ARG ALA SER GLY LYS PRO ALA THR LEU ARG SEQRES 15 D 596 HIS HIS ARG PHE ASP GLY SER GLY THR ILE ALA VAL GLN SEQRES 16 D 596 LEU GLN ARG GLN ALA GLY ALA PRO PRO ARG THR PRO MET SEQRES 17 D 596 VAL LEU ALA ASP GLU ALA GLY LYS TYR ARG ASN VAL LEU SEQRES 18 D 596 HIS ILE PRO GLY TRP THR ASP PRO ASP VAL TRP GLU GLN SEQRES 19 D 596 MET THR ARG SER GLN CYS ARG GLN SER GLY ARG VAL THR SEQRES 20 D 596 VAL ARG MET ARG CYS GLY SER THR ASP GLY GLN PRO GLN SEQRES 21 D 596 TRP ILE ASP LEU PRO VAL GLN VAL HIS ARG TRP LEU PRO SEQRES 22 D 596 ALA ASP ALA ASP ILE THR GLY ALA GLU LEU VAL VAL THR SEQRES 23 D 596 ARG VAL ALA GLY ILE TYR ARG ALA LYS LEU CYS VAL THR SEQRES 24 D 596 ALA ARG ILE GLY ASP THR GLU PRO VAL THR SER GLY PRO SEQRES 25 D 596 THR VAL ALA LEU HIS LEU GLY TRP ARG SER THR GLU GLU SEQRES 26 D 596 GLY THR ALA VAL ALA THR TRP ARG SER ASP ALA PRO LEU SEQRES 27 D 596 ASP ILE PRO PHE GLY LEU ARG THR VAL MET ARG VAL ASP SEQRES 28 D 596 ALA ALA GLY THR SER GLY ILE ILE VAL VAL PRO ALA THR SEQRES 29 D 596 ILE GLU ARG ARG LEU THR ARG THR GLU ASN ILE ALA SER SEQRES 30 D 596 SER ARG SER LEU ALA LEU ASP ALA LEU ARG ASP LYS VAL SEQRES 31 D 596 VAL GLY TRP LEU SER ASP ASN ASP ALA PRO THR TYR ARG SEQRES 32 D 596 ASP ALA PRO LEU GLU ALA ALA THR VAL LYS GLN TRP LYS SEQRES 33 D 596 SER PRO GLN ARG PHE ALA SER LEU ALA HIS ALA TRP LYS SEQRES 34 D 596 ASP ASN GLY THR GLU ILE SER ASP ILE LEU TRP ALA TRP SEQRES 35 D 596 PHE SER LEU ASP ARG LYS GLN TRP ALA GLN GLN GLU ASN SEQRES 36 D 596 GLY ARG ARG LYS ALA LEU GLY HIS ARG ASP ASP LEU TYR SEQRES 37 D 596 ARG GLN ILE ALA ALA VAL ILE SER ASP GLN ALA GLY HIS SEQRES 38 D 596 VAL LEU VAL ASP ASP THR SER VAL ALA GLU LEU SER ALA SEQRES 39 D 596 ARG ALA MET GLU ARG THR GLU LEU PRO THR GLU VAL GLN SEQRES 40 D 596 GLN LYS ILE ASP ARG ARG ARG ASP HIS ALA ALA PRO GLY SEQRES 41 D 596 GLY LEU ARG ALA SER VAL VAL ALA ALA MET THR ARG ASP SEQRES 42 D 596 GLY VAL PRO VAL THR ILE VAL ALA ALA ALA ASP PHE THR SEQRES 43 D 596 ARG THR HIS SER ARG CYS GLY HIS VAL ASN PRO ALA ASP SEQRES 44 D 596 ASP ARG TYR LEU SER ASN PRO VAL ARG CYS ASP GLY CYS SEQRES 45 D 596 GLY ALA MET TYR ASP GLN ASP ARG SER PHE VAL THR LEU SEQRES 46 D 596 MET LEU ARG ALA ALA THR ALA PRO SER ASN PRO HET MG B 101 1 HET ZN A 601 1 HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 4 MG MG 2+ FORMUL 5 ZN ZN 2+ HELIX 1 AA1 PRO A 18 SER A 52 1 35 HELIX 2 AA2 TYR A 53 ARG A 85 1 33 HELIX 3 AA3 GLU A 92 LYS A 119 1 28 HELIX 4 AA4 ALA A 122 CYS A 145 1 24 HELIX 5 AA5 TYR A 151 SER A 175 1 25 HELIX 6 AA6 THR A 206 ASP A 212 1 7 HELIX 7 AA7 ASP A 228 GLU A 233 1 6 HELIX 8 AA8 THR A 236 GLY A 244 1 9 HELIX 9 AA9 PRO A 341 ARG A 345 5 5 HELIX 10 AB1 ALA A 363 ASN A 397 1 35 HELIX 11 AB2 GLU A 408 GLN A 414 1 7 HELIX 12 AB3 SER A 417 TRP A 428 1 12 HELIX 13 AB4 THR A 433 ALA A 479 1 47 HELIX 14 AB5 ILE A 510 ALA A 518 1 9 HELIX 15 AB6 ALA A 518 GLY A 534 1 17 HELIX 16 AB7 ASP A 560 SER A 564 5 5 HELIX 17 AB8 ASP A 577 THR A 591 1 15 HELIX 18 AB9 GLU D 19 SER D 52 1 34 HELIX 19 AC1 TYR D 53 ALA D 64 1 12 HELIX 20 AC2 GLN D 96 VAL D 118 1 23 HELIX 21 AC3 LYS D 119 ASP D 121 5 3 HELIX 22 AC4 ALA D 122 CYS D 145 1 24 HELIX 23 AC5 TYR D 151 GLY D 176 1 26 SHEET 1 AA1 7 THR A 191 GLN A 195 0 SHEET 2 AA1 7 ASP A 277 VAL A 288 -1 O ALA A 281 N VAL A 194 SHEET 3 AA1 7 ILE A 291 ARG A 301 -1 O THR A 299 N THR A 279 SHEET 4 AA1 7 MET A 4 VAL A 11 -1 N MET A 9 O LEU A 296 SHEET 5 AA1 7 PRO A 259 GLN A 267 -1 O GLN A 267 N GLY A 10 SHEET 6 AA1 7 ARG A 245 SER A 254 -1 N GLY A 253 O GLN A 260 SHEET 7 AA1 7 LEU A 221 HIS A 222 -1 N HIS A 222 O ARG A 249 SHEET 1 AA2 3 SER A 322 THR A 323 0 SHEET 2 AA2 3 GLY A 326 SER A 334 -1 O GLY A 326 N THR A 323 SHEET 3 AA2 3 SER A 356 PRO A 362 -1 O ILE A 359 N ALA A 330 SHEET 1 AA3 5 SER A 322 THR A 323 0 SHEET 2 AA3 5 GLY A 326 SER A 334 -1 O GLY A 326 N THR A 323 SHEET 3 AA3 5 THR A 313 LEU A 318 -1 N ALA A 315 O ARG A 333 SHEET 4 AA3 5 HIS A 481 ASP A 485 1 O HIS A 481 N VAL A 314 SHEET 5 AA3 5 VAL A 537 VAL A 540 1 O THR A 538 N VAL A 484 SHEET 1 AA4 2 VAL A 567 ARG A 568 0 SHEET 2 AA4 2 MET A 575 TYR A 576 -1 O TYR A 576 N VAL A 567 LINK OP1 G B -22 MG MG B 101 1555 1555 1.74 LINK OP2 G B -22 MG MG B 101 1555 1555 2.72 LINK OP2 C B -21 MG MG B 101 1555 1555 1.99 LINK ND1 HIS A 549 ZN ZN A 601 1555 1555 2.04 LINK SG CYS A 552 ZN ZN A 601 1555 1555 2.26 LINK SG CYS A 569 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 572 ZN ZN A 601 1555 1555 2.31 CISPEP 1 ASN A 565 PRO A 566 0 -2.73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000