HEADER TRANSCRIPTION 23-NOV-22 8HJB TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PVRA WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TETR/ACRR FAMILY TRANSCRIPTIONAL REGULATOR,TRANSCRIPTIONAL COMPND 5 REGULATOR; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PVRA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PA14; SOURCE 3 ORGANISM_TAXID: 652611; SOURCE 4 GENE: ICAR, ACRR5, ALP65_03124, CAZ10_04505, CGU42_03525, SOURCE 5 DT376_07795, E4V10_02875, E5D53_14345, E5Z62_27065, E5Z63_21855, SOURCE 6 ECC04_004205, GNQ48_10480, GUL26_15740, I5R60_12040, IPC111_05370, SOURCE 7 IPC112_03820, IPC113_08970, IPC114_03665, IPC115_09445, SOURCE 8 IPC116_12905, IPC117_01270, IPC118_17205, IPC119_01270, SOURCE 9 IPC120_08585, IPC121_23995, IPC122_26595, IPC123_13615, SOURCE 10 IPC124_02210, IPC125_02280, IPC126_02280, IPC127_05520, SOURCE 11 IPC128_06500, IPC1295_02635, IPC129_03385, IPC1306_00820, SOURCE 12 IPC1307_00820, IPC1308_01765, IPC1309_01210, IPC130_08705, SOURCE 13 IPC1310_20400, IPC1311_11055, IPC1312_02745, IPC1313_02755, SOURCE 14 IPC1314_15055, IPC1315_11085, IPC1316_09415, IPC1317_01215, SOURCE 15 IPC1318_08785, IPC1319_16990, IPC1320_09215, IPC1321_10825, SOURCE 16 IPC1322_14910, IPC1323_13890, IPC1324_14335, IPC1325_12685, SOURCE 17 IPC1326_14415, IPC1327_16075, IPC1328_07000, IPC1329_01215, SOURCE 18 IPC1330_16860, IPC1331_06735, IPC1332_10900, IPC1333_03260, SOURCE 19 IPC1334_14490, IPC1335_10585, IPC1336_15040, IPC1337_11350, SOURCE 20 IPC1338_07490, IPC1339_12735, IPC133_10855, IPC1340_11790, SOURCE 21 IPC1341_07510, IPC1343_06380, IPC1345_02745, IPC1346_05675, SOURCE 22 IPC1347_08485, IPC1348_02755, IPC135_13200, IPC137_03780, SOURCE 23 IPC139_12105, IPC140_07630, IPC141_12315, IPC142_09710, SOURCE 24 IPC143_09875, IPC144_01055, IPC145_06115, IPC146_01055, SOURCE 25 IPC1474_02190, IPC1476_02860, IPC1477_06410, IPC1478_01690, SOURCE 26 IPC1479_15185, IPC147_12070, IPC1480_15440, IPC1481_17805, SOURCE 27 IPC1482_05515, IPC1485_13825, IPC1486_09235, IPC1487_00765, SOURCE 28 IPC1488_16575, IPC1489_12290, IPC148_02075, IPC1490_02470, SOURCE 29 IPC1491_06190, IPC1492_03585, IPC1494_03000, IPC1495_01665, SOURCE 30 IPC1496_14865, IPC1498_10560, IPC1499_14860, IPC149_01055, SOURCE 31 IPC1500_06750, IPC1501_01215, IPC1502_04040, IPC1503_01000, SOURCE 32 IPC1504_01010, IPC1505_13480, IPC1506_19460, IPC1507_05060, SOURCE 33 IPC1508_10550, IPC1509_14550, IPC150_14460, IPC1510_04225, SOURCE 34 IPC1511_01525, IPC1512_05030, IPC1513_22270, IPC1514_18185, SOURCE 35 IPC1515_18905, IPC1516_01320, IPC1517_01215, IPC1518_08030, SOURCE 36 IPC1519_12340, IPC151_11775, IPC1521_13560, IPC1522_02390, SOURCE 37 IPC1523_03605, IPC152_09635, IPC153_04910, IPC154_07450, SOURCE 38 IPC155_07400, IPC156_02990, IPC157_08570, IPC1583_10080, SOURCE 39 IPC1584_12220, IPC1585_11335, IPC1586_07330, IPC1587_13810, SOURCE 40 IPC1588_10025, IPC1589_02490, IPC158_07390, IPC1590_14970, SOURCE 41 IPC1591_08460, IPC1592_11095, IPC1593_06830, IPC1594_02990, SOURCE 42 IPC1595_05665, IPC1596_09440, IPC1597_09495, IPC1598_01980, SOURCE 43 IPC1599_03005, IPC159_07400, IPC1600_16790, IPC1601_10780, SOURCE 44 IPC1602_17245, IPC1603_14770, IPC1604_01745, IPC1605_05455, SOURCE 45 IPC1606_04825, IPC161_09520, IPC162_09880, IPC163_03825, SOURCE 46 IPC164_08560, IPC165_03825, IPC166_05525, IPC167_03825, SOURCE 47 IPC168_20130, IPC169_03825, IPC170_08560, IPC171_16450, SOURCE 48 IPC172_15260, IPC173_20475, IPC174_05820, IPC175_12970, SOURCE 49 IPC176_11725, IPC177_13080, IPC178_01215, IPC179_15480, SOURCE 50 IPC180_10155, IPC181_09045, IPC182_05375, IPC183_01060, SOURCE 51 IPC184_02640, IPC26_07870, IPC27_04050, IPC29_17535, IPC30_01380, SOURCE 52 IPC31_02185, IPC32_00905, IPC33_21820, IPC34_13495, IPC35_15445, SOURCE 53 IPC36_13480, IPC37_01140, IPC38_16530, IPC40_08710, IPC41_10575, SOURCE 54 IPC43_07930, IPC44_14575, IPC45_08060, IPC46_02025, IPC47_11200, SOURCE 55 IPC48_15175, IPC49_11615, IPC50_04955, IPC51_01915, IPC54_02210, SOURCE 56 IPC55_06500, IPC56_01915, IPC574_11290, IPC575_06730, IPC576_12370, SOURCE 57 IPC577_07725, IPC578_12535, IPC579_11730, IPC57_03340, IPC580_07720, SOURCE 58 IPC582_13065, IPC584_08355, IPC586_12520, IPC589_07695, IPC58_10915, SOURCE 59 IPC596_01285, IPC597_08195, IPC598_11110, IPC599_01285, IPC59_19445, SOURCE 60 IPC600_01285, IPC601_01280, IPC602_01290, IPC603_06120, SOURCE 61 IPC604_07295, IPC605_06295, IPC606_06290, IPC607_14040, SOURCE 62 IPC608_02370, IPC609_06890, IPC60_16485, IPC610_02370, IPC611_13025, SOURCE 63 IPC612_10375, IPC613_14130, IPC614_05225, IPC615_06015, SOURCE 64 IPC616_11575, IPC618_14040, IPC61_02375, IPC620_19310, IPC621_07445, SOURCE 65 IPC622_01280, IPC623_18790, IPC624_15950, IPC625_01405, SOURCE 66 IPC627_01290, IPC629_01405, IPC630_01280, IPC632_13255, SOURCE 67 IPC633_07865, IPC634_11935, IPC64_06515, IPC65_26010, IPC66_09965, SOURCE 68 IPC67_22660, IPC68_12530, IPC70_06620, IPC71_07610, IPC72_11155, SOURCE 69 IPC73_14695, IPC74_10485, IPC75_09820, IPC76_12790, IPC77_07455, SOURCE 70 IPC78_07465, NCTC13621_02839, PA52TS2_4326, PAMH19_2113; SOURCE 71 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 72 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TETR FAMILY, TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.LIANG,M.BARTLAM REVDAT 3 29-MAY-24 8HJB 1 REMARK REVDAT 2 02-AUG-23 8HJB 1 JRNL REVDAT 1 08-FEB-23 8HJB 0 JRNL AUTH X.PAN,H.LIANG,X.ZHAO,Q.ZHANG,L.CHEN,Z.YUE,L.YIN,Y.JIN,F.BAI, JRNL AUTH 2 Z.CHENG,M.BARTLAM,W.WU JRNL TITL REGULATORY AND STRUCTURAL MECHANISMS OF PVRA-MEDIATED JRNL TITL 2 REGULATION OF THE PQS QUORUM-SENSING SYSTEM AND PHA JRNL TITL 3 BIOSYNTHESIS IN PSEUDOMONAS AERUGINOSA. JRNL REF NUCLEIC ACIDS RES. V. 51 2691 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36744476 JRNL DOI 10.1093/NAR/GKAD059 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 207.28 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 12342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2500 - 5.5100 0.89 1240 139 0.2618 0.2833 REMARK 3 2 5.5100 - 4.3700 0.89 1270 137 0.2242 0.2944 REMARK 3 3 4.3700 - 3.8200 0.88 1235 142 0.2177 0.2634 REMARK 3 4 3.8200 - 3.4700 0.89 1233 137 0.2382 0.2920 REMARK 3 5 3.4700 - 3.2200 0.89 1263 134 0.2531 0.3108 REMARK 3 6 3.2200 - 3.0300 0.89 1240 139 0.2745 0.3322 REMARK 3 7 3.0300 - 2.8800 0.88 1228 136 0.2732 0.3128 REMARK 3 8 2.8800 - 2.7600 0.88 1200 134 0.2595 0.3017 REMARK 3 9 2.7600 - 2.6500 0.85 1199 136 0.2751 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.752 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3203 REMARK 3 ANGLE : 0.573 4307 REMARK 3 CHIRALITY : 0.037 449 REMARK 3 PLANARITY : 0.005 546 REMARK 3 DIHEDRAL : 5.195 421 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 9 THROUGH 202) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1376 18.7195 3.3849 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.3242 REMARK 3 T33: 0.7135 T12: -0.0522 REMARK 3 T13: 0.0329 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.0747 L22: 0.3449 REMARK 3 L33: 0.4950 L12: -0.1652 REMARK 3 L13: 0.1131 L23: -0.1633 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.0203 S13: -0.0908 REMARK 3 S21: 0.1463 S22: -0.0547 S23: -0.1314 REMARK 3 S31: -0.1131 S32: 0.0378 S33: -0.0227 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 7 THROUGH 202) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4254 11.1237 -25.8756 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.3658 REMARK 3 T33: 0.7333 T12: 0.0222 REMARK 3 T13: -0.0021 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.1268 L22: 0.4641 REMARK 3 L33: 0.5851 L12: 0.0134 REMARK 3 L13: 0.1578 L23: -0.4202 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0617 S13: 0.4081 REMARK 3 S21: -0.2071 S22: 0.0192 S23: -0.1555 REMARK 3 S31: 0.1101 S32: -0.0384 S33: -0.0335 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300033729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7Y0Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% GLYCEROL, 30% (W/V) PEG 4000, 0.2 REMARK 280 M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.1M TRIS HYDROCHLORIDE, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.33150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.16575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.49725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 VAL A 8 REMARK 465 SER A 78 REMARK 465 GLU A 79 REMARK 465 ASP A 80 REMARK 465 VAL A 81 REMARK 465 ALA A 82 REMARK 465 ARG A 83 REMARK 465 GLU A 180 REMARK 465 VAL A 181 REMARK 465 LEU A 182 REMARK 465 GLU A 183 REMARK 465 ASP A 184 REMARK 465 ARG A 203 REMARK 465 LYS A 204 REMARK 465 ARG A 205 REMARK 465 GLU A 206 REMARK 465 GLY A 207 REMARK 465 ASP A 208 REMARK 465 ALA A 209 REMARK 465 PRO A 210 REMARK 465 SER A 211 REMARK 465 ALA A 212 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 SER B 78 REMARK 465 GLU B 79 REMARK 465 ASP B 80 REMARK 465 VAL B 81 REMARK 465 ALA B 82 REMARK 465 ARG B 83 REMARK 465 GLU B 183 REMARK 465 ASP B 184 REMARK 465 ARG B 203 REMARK 465 LYS B 204 REMARK 465 ARG B 205 REMARK 465 GLU B 206 REMARK 465 GLY B 207 REMARK 465 ASP B 208 REMARK 465 ALA B 209 REMARK 465 PRO B 210 REMARK 465 SER B 211 REMARK 465 ALA B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 134 O HOH A 401 1.93 REMARK 500 O LEU A 25 O HOH A 402 1.96 REMARK 500 O HOH A 405 O HOH A 434 1.97 REMARK 500 O HOH B 332 O HOH B 334 1.99 REMARK 500 OD1 ASP B 20 O HOH B 301 2.00 REMARK 500 O HOH A 406 O HOH A 429 2.05 REMARK 500 O ARG B 98 O HOH B 302 2.05 REMARK 500 O ARG A 98 O HOH A 403 2.08 REMARK 500 OE2 GLU A 111 O HOH A 404 2.08 REMARK 500 O HOH A 409 O HOH A 421 2.10 REMARK 500 NH2 ARG B 198 O HOH B 303 2.11 REMARK 500 O HOH B 313 O HOH B 327 2.12 REMARK 500 N THR A 138 O HOH A 401 2.17 REMARK 500 OE2 GLU B 37 O HOH B 304 2.17 REMARK 500 O ASP A 107 O HOH A 404 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 53 -69.42 -100.80 REMARK 500 ASP A 99 74.65 55.78 REMARK 500 THR A 116 57.33 -100.50 REMARK 500 SER A 117 58.52 -18.03 REMARK 500 VAL A 119 83.32 54.24 REMARK 500 ASN A 152 101.52 -59.39 REMARK 500 PRO A 176 61.64 -58.67 REMARK 500 PHE A 177 16.94 -145.50 REMARK 500 SER B 56 148.24 -170.17 REMARK 500 PHE B 76 25.81 -79.42 REMARK 500 ASP B 99 73.59 54.77 REMARK 500 SER B 117 60.01 -69.63 REMARK 500 VAL B 119 75.67 56.68 REMARK 500 PRO B 176 1.30 -58.70 REMARK 500 GLU B 186 -35.82 66.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 354 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 355 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 356 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 357 DISTANCE = 7.59 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 COA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7Y0Z RELATED DB: PDB REMARK 900 PVRA (NATIVE) REMARK 900 RELATED ID: 7Y0Y RELATED DB: PDB REMARK 900 PARA (SEMET) DBREF1 8HJB A 1 212 UNP A0A072ZS40_PSEAI DBREF2 8HJB A A0A072ZS40 1 212 DBREF1 8HJB B 1 212 UNP A0A072ZS40_PSEAI DBREF2 8HJB B A0A072ZS40 1 212 SEQRES 1 A 212 MET GLN LYS GLU PRO ARG LYS VAL ARG GLU PHE ARG ARG SEQRES 2 A 212 ARG GLU GLN GLU ILE LEU ASP THR ALA LEU LYS LEU PHE SEQRES 3 A 212 LEU GLU GLN GLY GLU ASP SER VAL THR VAL GLU MET ILE SEQRES 4 A 212 ALA ASP ALA VAL GLY ILE GLY LYS GLY THR ILE TYR LYS SEQRES 5 A 212 HIS PHE LYS SER LYS ALA GLU ILE TYR LEU ARG LEU MET SEQRES 6 A 212 LEU ASP TYR GLU ARG ASP LEU ALA ALA LEU PHE HIS SER SEQRES 7 A 212 GLU ASP VAL ALA ARG ASP LYS GLU ALA LEU SER ARG ALA SEQRES 8 A 212 TYR PHE GLU PHE ARG MET ARG ASP PRO GLN ARG TYR ARG SEQRES 9 A 212 LEU PHE ASP ARG LEU GLU GLU LYS VAL VAL LYS THR SER SEQRES 10 A 212 GLN VAL PRO GLU MET VAL GLU GLU LEU HIS LYS ILE ARG SEQRES 11 A 212 ALA SER ASN PHE GLU ARG LEU THR GLN LEU ILE LYS GLU SEQRES 12 A 212 ARG ILE ALA ASP GLY LYS LEU GLU ASN VAL PRO PRO TYR SEQRES 13 A 212 PHE HIS TYR CYS ALA ALA TRP ALA LEU VAL HIS GLY ALA SEQRES 14 A 212 VAL ALA LEU TYR HIS SER PRO PHE TRP ARG GLU VAL LEU SEQRES 15 A 212 GLU ASP GLN GLU GLY PHE PHE HIS PHE LEU MET ASP ILE SEQRES 16 A 212 GLY VAL ARG MET GLY ASN LYS ARG LYS ARG GLU GLY ASP SEQRES 17 A 212 ALA PRO SER ALA SEQRES 1 B 212 MET GLN LYS GLU PRO ARG LYS VAL ARG GLU PHE ARG ARG SEQRES 2 B 212 ARG GLU GLN GLU ILE LEU ASP THR ALA LEU LYS LEU PHE SEQRES 3 B 212 LEU GLU GLN GLY GLU ASP SER VAL THR VAL GLU MET ILE SEQRES 4 B 212 ALA ASP ALA VAL GLY ILE GLY LYS GLY THR ILE TYR LYS SEQRES 5 B 212 HIS PHE LYS SER LYS ALA GLU ILE TYR LEU ARG LEU MET SEQRES 6 B 212 LEU ASP TYR GLU ARG ASP LEU ALA ALA LEU PHE HIS SER SEQRES 7 B 212 GLU ASP VAL ALA ARG ASP LYS GLU ALA LEU SER ARG ALA SEQRES 8 B 212 TYR PHE GLU PHE ARG MET ARG ASP PRO GLN ARG TYR ARG SEQRES 9 B 212 LEU PHE ASP ARG LEU GLU GLU LYS VAL VAL LYS THR SER SEQRES 10 B 212 GLN VAL PRO GLU MET VAL GLU GLU LEU HIS LYS ILE ARG SEQRES 11 B 212 ALA SER ASN PHE GLU ARG LEU THR GLN LEU ILE LYS GLU SEQRES 12 B 212 ARG ILE ALA ASP GLY LYS LEU GLU ASN VAL PRO PRO TYR SEQRES 13 B 212 PHE HIS TYR CYS ALA ALA TRP ALA LEU VAL HIS GLY ALA SEQRES 14 B 212 VAL ALA LEU TYR HIS SER PRO PHE TRP ARG GLU VAL LEU SEQRES 15 B 212 GLU ASP GLN GLU GLY PHE PHE HIS PHE LEU MET ASP ILE SEQRES 16 B 212 GLY VAL ARG MET GLY ASN LYS ARG LYS ARG GLU GLY ASP SEQRES 17 B 212 ALA PRO SER ALA HET COA A 301 43 HETNAM COA COENZYME A FORMUL 3 COA C21 H36 N7 O16 P3 S FORMUL 4 HOH *112(H2 O) HELIX 1 AA1 ARG A 9 GLN A 29 1 21 HELIX 2 AA2 THR A 35 GLY A 44 1 10 HELIX 3 AA3 GLY A 48 HIS A 53 5 6 HELIX 4 AA4 SER A 56 PHE A 76 1 21 HELIX 5 AA5 GLU A 86 ARG A 98 1 13 HELIX 6 AA6 ASP A 99 VAL A 113 1 15 HELIX 7 AA7 VAL A 119 ASP A 147 1 29 HELIX 8 AA8 PRO A 154 SER A 175 1 22 HELIX 9 AA9 GLU A 186 MET A 199 1 14 HELIX 10 AB1 VAL B 8 GLY B 30 1 23 HELIX 11 AB2 THR B 35 GLY B 44 1 10 HELIX 12 AB3 THR B 49 HIS B 53 5 5 HELIX 13 AB4 SER B 56 PHE B 76 1 21 HELIX 14 AB5 LYS B 85 ARG B 98 1 14 HELIX 15 AB6 ASP B 99 VAL B 113 1 15 HELIX 16 AB7 VAL B 119 ASP B 147 1 29 HELIX 17 AB8 PRO B 154 TYR B 173 1 20 HELIX 18 AB9 PHE B 177 LEU B 182 1 6 HELIX 19 AC1 GLU B 186 MET B 199 1 14 CRYST1 44.043 44.043 228.663 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004373 0.00000