HEADER HYDROLASE 25-NOV-22 8HKD TITLE CRYSTAL STRUCTURE OF P450BSBETA-L78G/Q85F/F173S/G290I VARIANT IN TITLE 2 COMPLEX WITH PALMITOLEIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY-ACID PEROXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOCHROME P450 152A1,CYTOCHROME P450BSBETA,FATTY ACID BETA- COMPND 5 HYDROXYLASE; COMPND 6 EC: 1.11.2.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: CYPC, CYP152A1, BSU02100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P450 HYDROXYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HE,X.WANG,F.LI REVDAT 1 08-NOV-23 8HKD 0 JRNL AUTH Q.MA,X.SHAN,X.CHU,H.XU,Z.CHEN,F.LI,J.LIAO,C.HE,W.BAI,X.WANG JRNL TITL BIOCATALYTIC ENANTIOSELECTIVE GAMMA-C-H LACTONIZATION OF JRNL TITL 2 ALIPHATIC CARBOXYLIC ACIDS JRNL REF NAT SYNTH 2023 JRNL REFN ISSN 2731-0582 JRNL DOI 10.1038/S44160-023-00427-Y REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 56806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.2100 - 6.2600 0.99 2683 155 0.1530 0.1729 REMARK 3 2 6.2500 - 5.0600 1.00 2637 145 0.1707 0.2095 REMARK 3 3 5.0600 - 4.4500 1.00 2592 149 0.1449 0.2051 REMARK 3 4 4.4500 - 4.0500 1.00 2563 153 0.1460 0.1782 REMARK 3 5 4.0500 - 3.7700 1.00 2571 153 0.1589 0.1839 REMARK 3 6 3.7700 - 3.5500 1.00 2570 134 0.1687 0.2052 REMARK 3 7 3.5500 - 3.3800 1.00 2595 130 0.1881 0.2422 REMARK 3 8 3.3800 - 3.2300 1.00 2553 133 0.1975 0.2565 REMARK 3 9 3.2300 - 3.1100 1.00 2562 128 0.2051 0.2510 REMARK 3 10 3.1100 - 3.0000 1.00 2588 112 0.2151 0.2462 REMARK 3 11 3.0000 - 2.9100 1.00 2540 153 0.2220 0.2226 REMARK 3 12 2.9100 - 2.8300 1.00 2565 137 0.2231 0.2426 REMARK 3 13 2.8300 - 2.7500 1.00 2551 119 0.2218 0.2514 REMARK 3 14 2.7500 - 2.6900 1.00 2552 139 0.2353 0.3035 REMARK 3 15 2.6900 - 2.6300 1.00 2576 112 0.2433 0.2864 REMARK 3 16 2.6300 - 2.5700 1.00 2547 139 0.2460 0.2769 REMARK 3 17 2.5700 - 2.5200 1.00 2533 156 0.2562 0.3053 REMARK 3 18 2.5200 - 2.4700 1.00 2525 145 0.2554 0.2878 REMARK 3 19 2.4700 - 2.4300 1.00 2545 137 0.2754 0.3109 REMARK 3 20 2.4300 - 2.3900 1.00 2495 167 0.2791 0.3368 REMARK 3 21 2.3900 - 2.3500 1.00 2544 123 0.2889 0.3337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6927 REMARK 3 ANGLE : 0.892 9344 REMARK 3 CHIRALITY : 0.048 955 REMARK 3 PLANARITY : 0.008 1201 REMARK 3 DIHEDRAL : 15.334 2595 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 13 THROUGH 416) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8094 48.8111 51.7796 REMARK 3 T TENSOR REMARK 3 T11: 0.7274 T22: 0.7074 REMARK 3 T33: 0.3454 T12: -0.1087 REMARK 3 T13: 0.1011 T23: 0.1633 REMARK 3 L TENSOR REMARK 3 L11: 1.1033 L22: 1.3931 REMARK 3 L33: 1.5640 L12: -0.4223 REMARK 3 L13: 0.2594 L23: -0.6332 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: -0.5475 S13: -0.3407 REMARK 3 S21: 0.0679 S22: -0.0143 S23: 0.1625 REMARK 3 S31: 0.4156 S32: -0.2171 S33: -0.0481 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 11 THROUGH 416) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4764 44.4270 11.4078 REMARK 3 T TENSOR REMARK 3 T11: 0.1937 T22: 0.1916 REMARK 3 T33: 0.3867 T12: -0.0174 REMARK 3 T13: 0.0599 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.0256 L22: 1.6240 REMARK 3 L33: 1.1379 L12: -0.3836 REMARK 3 L13: -0.3852 L23: 0.3462 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: -0.0740 S13: -0.3573 REMARK 3 S21: 0.2207 S22: -0.0700 S23: 0.3441 REMARK 3 S31: 0.1594 S32: -0.1431 S33: 0.0885 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300033778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 13.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 1.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM HEPES PH 7.3, 28 % PEG REMARK 280 300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 PEG B 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 787 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 856 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 ILE A 5 REMARK 465 PRO A 6 REMARK 465 HIS A 7 REMARK 465 ASP A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 SER A 417 REMARK 465 LEU A 418 REMARK 465 GLU A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 ILE B 5 REMARK 465 SER B 417 REMARK 465 LEU B 418 REMARK 465 GLU B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ASP A 130 CG OD1 OD2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 HIS B 7 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 LYS B 72 CD CE NZ REMARK 470 ASN B 272 CG OD1 ND2 REMARK 470 GLU B 341 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 716 O HOH B 840 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 -69.99 -128.35 REMARK 500 ASN A 82 40.47 73.76 REMARK 500 ASP A 130 -79.37 -75.51 REMARK 500 ASN A 272 -141.81 -95.18 REMARK 500 PHE A 289 -76.32 -136.79 REMARK 500 PHE A 347 -3.71 -140.73 REMARK 500 PHE A 408 90.16 66.44 REMARK 500 HIS B 7 101.09 -59.86 REMARK 500 SER B 10 71.08 -69.86 REMARK 500 LEU B 11 -139.37 50.97 REMARK 500 ASN B 33 67.53 32.91 REMARK 500 LEU B 42 29.85 49.90 REMARK 500 SER B 77 -68.31 -122.11 REMARK 500 ASN B 272 -144.87 -114.76 REMARK 500 PHE B 289 -74.17 -146.35 REMARK 500 PHE B 408 92.13 66.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 860 DISTANCE = 6.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 363 SG REMARK 620 2 HEM A 501 NA 99.6 REMARK 620 3 HEM A 501 NB 86.7 89.0 REMARK 620 4 HEM A 501 NC 84.6 175.6 92.6 REMARK 620 5 HEM A 501 ND 93.0 91.6 179.4 86.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 363 SG REMARK 620 2 HEM B 501 NA 99.7 REMARK 620 3 HEM B 501 NB 89.0 91.8 REMARK 620 4 HEM B 501 NC 87.8 172.3 86.4 REMARK 620 5 HEM B 501 ND 96.9 87.2 174.1 93.7 REMARK 620 N 1 2 3 4 DBREF 8HKD A 3 417 UNP O31440 CYPC_BACSU 3 417 DBREF 8HKD B 3 417 UNP O31440 CYPC_BACSU 3 417 SEQADV 8HKD MET A 1 UNP O31440 INITIATING METHIONINE SEQADV 8HKD ASP A 2 UNP O31440 EXPRESSION TAG SEQADV 8HKD GLY A 78 UNP O31440 LEU 78 VARIANT SEQADV 8HKD PHE A 85 UNP O31440 GLN 85 VARIANT SEQADV 8HKD SER A 173 UNP O31440 PHE 173 VARIANT SEQADV 8HKD ILE A 290 UNP O31440 GLY 290 VARIANT SEQADV 8HKD LEU A 418 UNP O31440 EXPRESSION TAG SEQADV 8HKD GLU A 419 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS A 420 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS A 421 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS A 422 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS A 423 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS A 424 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS A 425 UNP O31440 EXPRESSION TAG SEQADV 8HKD MET B 1 UNP O31440 INITIATING METHIONINE SEQADV 8HKD ASP B 2 UNP O31440 EXPRESSION TAG SEQADV 8HKD GLY B 78 UNP O31440 LEU 78 VARIANT SEQADV 8HKD PHE B 85 UNP O31440 GLN 85 VARIANT SEQADV 8HKD SER B 173 UNP O31440 PHE 173 VARIANT SEQADV 8HKD ILE B 290 UNP O31440 GLY 290 VARIANT SEQADV 8HKD LEU B 418 UNP O31440 EXPRESSION TAG SEQADV 8HKD GLU B 419 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS B 420 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS B 421 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS B 422 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS B 423 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS B 424 UNP O31440 EXPRESSION TAG SEQADV 8HKD HIS B 425 UNP O31440 EXPRESSION TAG SEQRES 1 A 425 MET ASP GLU GLN ILE PRO HIS ASP LYS SER LEU ASP ASN SEQRES 2 A 425 SER LEU THR LEU LEU LYS GLU GLY TYR LEU PHE ILE LYS SEQRES 3 A 425 ASN ARG THR GLU ARG TYR ASN SER ASP LEU PHE GLN ALA SEQRES 4 A 425 ARG LEU LEU GLY LYS ASN PHE ILE CYS MET THR GLY ALA SEQRES 5 A 425 GLU ALA ALA LYS VAL PHE TYR ASP THR ASP ARG PHE GLN SEQRES 6 A 425 ARG GLN ASN ALA LEU PRO LYS ARG VAL GLN LYS SER GLY SEQRES 7 A 425 PHE GLY VAL ASN ALA ILE PHE GLY MET ASP GLY SER ALA SEQRES 8 A 425 HIS ILE HIS ARG LYS MET LEU PHE LEU SER LEU MET THR SEQRES 9 A 425 PRO PRO HIS GLN LYS ARG LEU ALA GLU LEU MET THR GLU SEQRES 10 A 425 GLU TRP LYS ALA ALA VAL THR ARG TRP GLU LYS ALA ASP SEQRES 11 A 425 GLU VAL VAL LEU PHE GLU GLU ALA LYS GLU ILE LEU CYS SEQRES 12 A 425 ARG VAL ALA CYS TYR TRP ALA GLY VAL PRO LEU LYS GLU SEQRES 13 A 425 THR GLU VAL LYS GLU ARG ALA ASP ASP PHE ILE ASP MET SEQRES 14 A 425 VAL ASP ALA SER GLY ALA VAL GLY PRO ARG HIS TRP LYS SEQRES 15 A 425 GLY ARG ARG ALA ARG PRO ARG ALA GLU GLU TRP ILE GLU SEQRES 16 A 425 VAL MET ILE GLU ASP ALA ARG ALA GLY LEU LEU LYS THR SEQRES 17 A 425 THR SER GLY THR ALA LEU HIS GLU MET ALA PHE HIS THR SEQRES 18 A 425 GLN GLU ASP GLY SER GLN LEU ASP SER ARG MET ALA ALA SEQRES 19 A 425 ILE GLU LEU ILE ASN VAL LEU ARG PRO ILE VAL ALA ILE SEQRES 20 A 425 SER TYR PHE LEU VAL PHE SER ALA LEU ALA LEU HIS GLU SEQRES 21 A 425 HIS PRO LYS TYR LYS GLU TRP LEU ARG SER GLY ASN SER SEQRES 22 A 425 ARG GLU ARG GLU MET PHE VAL GLN GLU VAL ARG ARG TYR SEQRES 23 A 425 TYR PRO PHE ILE PRO PHE LEU GLY ALA LEU VAL LYS LYS SEQRES 24 A 425 ASP PHE VAL TRP ASN ASN CYS GLU PHE LYS LYS GLY THR SEQRES 25 A 425 SER VAL LEU LEU ASP LEU TYR GLY THR ASN HIS ASP PRO SEQRES 26 A 425 ARG LEU TRP ASP HIS PRO ASP GLU PHE ARG PRO GLU ARG SEQRES 27 A 425 PHE ALA GLU ARG GLU GLU ASN LEU PHE ASP MET ILE PRO SEQRES 28 A 425 GLN GLY GLY GLY HIS ALA GLU LYS GLY HIS ARG CYS PRO SEQRES 29 A 425 GLY GLU GLY ILE THR ILE GLU VAL MET LYS ALA SER LEU SEQRES 30 A 425 ASP PHE LEU VAL HIS GLN ILE GLU TYR ASP VAL PRO GLU SEQRES 31 A 425 GLN SER LEU HIS TYR SER LEU ALA ARG MET PRO SER LEU SEQRES 32 A 425 PRO GLU SER GLY PHE VAL MET SER GLY ILE ARG ARG LYS SEQRES 33 A 425 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 425 MET ASP GLU GLN ILE PRO HIS ASP LYS SER LEU ASP ASN SEQRES 2 B 425 SER LEU THR LEU LEU LYS GLU GLY TYR LEU PHE ILE LYS SEQRES 3 B 425 ASN ARG THR GLU ARG TYR ASN SER ASP LEU PHE GLN ALA SEQRES 4 B 425 ARG LEU LEU GLY LYS ASN PHE ILE CYS MET THR GLY ALA SEQRES 5 B 425 GLU ALA ALA LYS VAL PHE TYR ASP THR ASP ARG PHE GLN SEQRES 6 B 425 ARG GLN ASN ALA LEU PRO LYS ARG VAL GLN LYS SER GLY SEQRES 7 B 425 PHE GLY VAL ASN ALA ILE PHE GLY MET ASP GLY SER ALA SEQRES 8 B 425 HIS ILE HIS ARG LYS MET LEU PHE LEU SER LEU MET THR SEQRES 9 B 425 PRO PRO HIS GLN LYS ARG LEU ALA GLU LEU MET THR GLU SEQRES 10 B 425 GLU TRP LYS ALA ALA VAL THR ARG TRP GLU LYS ALA ASP SEQRES 11 B 425 GLU VAL VAL LEU PHE GLU GLU ALA LYS GLU ILE LEU CYS SEQRES 12 B 425 ARG VAL ALA CYS TYR TRP ALA GLY VAL PRO LEU LYS GLU SEQRES 13 B 425 THR GLU VAL LYS GLU ARG ALA ASP ASP PHE ILE ASP MET SEQRES 14 B 425 VAL ASP ALA SER GLY ALA VAL GLY PRO ARG HIS TRP LYS SEQRES 15 B 425 GLY ARG ARG ALA ARG PRO ARG ALA GLU GLU TRP ILE GLU SEQRES 16 B 425 VAL MET ILE GLU ASP ALA ARG ALA GLY LEU LEU LYS THR SEQRES 17 B 425 THR SER GLY THR ALA LEU HIS GLU MET ALA PHE HIS THR SEQRES 18 B 425 GLN GLU ASP GLY SER GLN LEU ASP SER ARG MET ALA ALA SEQRES 19 B 425 ILE GLU LEU ILE ASN VAL LEU ARG PRO ILE VAL ALA ILE SEQRES 20 B 425 SER TYR PHE LEU VAL PHE SER ALA LEU ALA LEU HIS GLU SEQRES 21 B 425 HIS PRO LYS TYR LYS GLU TRP LEU ARG SER GLY ASN SER SEQRES 22 B 425 ARG GLU ARG GLU MET PHE VAL GLN GLU VAL ARG ARG TYR SEQRES 23 B 425 TYR PRO PHE ILE PRO PHE LEU GLY ALA LEU VAL LYS LYS SEQRES 24 B 425 ASP PHE VAL TRP ASN ASN CYS GLU PHE LYS LYS GLY THR SEQRES 25 B 425 SER VAL LEU LEU ASP LEU TYR GLY THR ASN HIS ASP PRO SEQRES 26 B 425 ARG LEU TRP ASP HIS PRO ASP GLU PHE ARG PRO GLU ARG SEQRES 27 B 425 PHE ALA GLU ARG GLU GLU ASN LEU PHE ASP MET ILE PRO SEQRES 28 B 425 GLN GLY GLY GLY HIS ALA GLU LYS GLY HIS ARG CYS PRO SEQRES 29 B 425 GLY GLU GLY ILE THR ILE GLU VAL MET LYS ALA SER LEU SEQRES 30 B 425 ASP PHE LEU VAL HIS GLN ILE GLU TYR ASP VAL PRO GLU SEQRES 31 B 425 GLN SER LEU HIS TYR SER LEU ALA ARG MET PRO SER LEU SEQRES 32 B 425 PRO GLU SER GLY PHE VAL MET SER GLY ILE ARG ARG LYS SEQRES 33 B 425 SER LEU GLU HIS HIS HIS HIS HIS HIS HET HEM A 501 43 HET PAM A 502 18 HET PEG A 503 7 HET PEG A 504 7 HET HEM B 501 43 HET PAM B 502 18 HET PEG B 503 7 HET PEG B 504 7 HET PEG B 505 7 HET PEG B 506 7 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PAM PALMITOLEIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 PAM 2(C16 H30 O2) FORMUL 5 PEG 6(C4 H10 O3) FORMUL 13 HOH *345(H2 O) HELIX 1 AA1 ASN A 13 GLY A 21 1 9 HELIX 2 AA2 LEU A 23 ASN A 33 1 11 HELIX 3 AA3 GLY A 51 TYR A 59 1 9 HELIX 4 AA4 PRO A 71 LYS A 76 1 6 HELIX 5 AA5 ALA A 83 MET A 87 5 5 HELIX 6 AA6 ASP A 88 LEU A 102 1 15 HELIX 7 AA7 THR A 104 GLU A 127 1 24 HELIX 8 AA8 LEU A 134 GLY A 151 1 18 HELIX 9 AA9 LYS A 155 THR A 157 5 3 HELIX 10 AB1 GLU A 158 ASP A 171 1 14 HELIX 11 AB2 GLY A 177 ALA A 203 1 27 HELIX 12 AB3 THR A 212 HIS A 220 1 9 HELIX 13 AB4 ASP A 229 HIS A 261 1 33 HELIX 14 AB5 PRO A 262 GLY A 271 1 10 HELIX 15 AB6 ASN A 272 TYR A 287 1 16 HELIX 16 AB7 LEU A 318 ASN A 322 1 5 HELIX 17 AB8 ARG A 335 ALA A 340 5 6 HELIX 18 AB9 GLY A 365 GLN A 383 1 19 HELIX 19 AC1 ASN B 13 GLY B 21 1 9 HELIX 20 AC2 LEU B 23 TYR B 32 1 10 HELIX 21 AC3 GLY B 51 TYR B 59 1 9 HELIX 22 AC4 PRO B 71 LYS B 76 1 6 HELIX 23 AC5 ALA B 83 MET B 87 5 5 HELIX 24 AC6 ASP B 88 LEU B 102 1 15 HELIX 25 AC7 THR B 104 GLU B 127 1 24 HELIX 26 AC8 LEU B 134 GLY B 151 1 18 HELIX 27 AC9 LYS B 155 THR B 157 5 3 HELIX 28 AD1 GLU B 158 ASP B 171 1 14 HELIX 29 AD2 GLY B 177 ALA B 203 1 27 HELIX 30 AD3 THR B 212 HIS B 220 1 9 HELIX 31 AD4 ASP B 229 ILE B 247 1 19 HELIX 32 AD5 ILE B 247 HIS B 261 1 15 HELIX 33 AD6 LYS B 263 GLY B 271 1 9 HELIX 34 AD7 ASN B 272 TYR B 287 1 16 HELIX 35 AD8 LEU B 318 HIS B 323 1 6 HELIX 36 AD9 ARG B 335 ALA B 340 5 6 HELIX 37 AE1 GLY B 365 GLN B 383 1 19 SHEET 1 AA1 5 LEU A 36 LEU A 41 0 SHEET 2 AA1 5 LYS A 44 THR A 50 -1 O PHE A 46 N ALA A 39 SHEET 3 AA1 5 SER A 313 ASP A 317 1 O ASP A 317 N MET A 49 SHEET 4 AA1 5 PHE A 292 VAL A 297 -1 N ALA A 295 O VAL A 314 SHEET 5 AA1 5 PHE A 64 GLN A 65 -1 N GLN A 65 O LEU A 296 SHEET 1 AA2 3 GLU A 131 VAL A 133 0 SHEET 2 AA2 3 VAL A 409 ARG A 415 -1 O MET A 410 N VAL A 132 SHEET 3 AA2 3 ILE A 384 ASP A 387 -1 N ASP A 387 O SER A 411 SHEET 1 AA3 2 PHE A 301 VAL A 302 0 SHEET 2 AA3 2 GLU A 307 PHE A 308 -1 O PHE A 308 N PHE A 301 SHEET 1 AA4 6 HIS B 7 ASP B 12 0 SHEET 2 AA4 6 LEU B 36 LEU B 41 1 O GLN B 38 N ASP B 8 SHEET 3 AA4 6 LYS B 44 MET B 49 -1 O PHE B 46 N ALA B 39 SHEET 4 AA4 6 SER B 313 ASP B 317 1 O LEU B 315 N MET B 49 SHEET 5 AA4 6 PHE B 292 VAL B 297 -1 N LEU B 293 O LEU B 316 SHEET 6 AA4 6 PHE B 64 GLN B 65 -1 N GLN B 65 O LEU B 296 SHEET 1 AA5 3 GLU B 131 VAL B 133 0 SHEET 2 AA5 3 VAL B 409 ARG B 415 -1 O MET B 410 N VAL B 132 SHEET 3 AA5 3 ILE B 384 ASP B 387 -1 N ASP B 387 O SER B 411 SHEET 1 AA6 2 PHE B 301 TRP B 303 0 SHEET 2 AA6 2 CYS B 306 PHE B 308 -1 O PHE B 308 N PHE B 301 LINK SG CYS A 363 FE HEM A 501 1555 1555 2.36 LINK SG CYS B 363 FE HEM B 501 1555 1555 2.31 CISPEP 1 MET A 400 PRO A 401 0 -0.28 CISPEP 2 MET B 400 PRO B 401 0 -0.43 CRYST1 126.843 126.843 146.543 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007884 0.004552 0.000000 0.00000 SCALE2 0.000000 0.009103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006824 0.00000