HEADER TRANSFERASE 28-NOV-22 8HKR TITLE CRYSTAL STRUCTURE OF HISTONE H3 LYSINE 79 (H3K79) METHYLTRANSFERASE TITLE 2 RV2067C FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LYSINE METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618/H37RV; SOURCE 5 GENE: RV2067C, MTCY49.06C; SOURCE 6 EXPRESSION_SYSTEM: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 246196; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMYNT KEYWDS MYCOBACTERIUM TUBERCULOSIS, SAM-BINDING, CLASS I METHYLTRANSFERASE, KEYWDS 2 DIMERIZATION DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.DADIREDDY,P.R.SINGH,S.M.KALLADI,N.VALAKUNJA,S.RAMAKUMAR REVDAT 2 24-JAN-24 8HKR 1 HEADER COMPND KEYWDS JRNL REVDAT 1 18-OCT-23 8HKR 0 JRNL AUTH P.R.SINGH,V.DADIREDDY,S.UDUPA,S.M.KALLADI,S.SHEE,S.KHOSLA, JRNL AUTH 2 R.S.RAJMANI,A.SINGH,S.RAMAKUMAR,V.NAGARAJA JRNL TITL THE MYCOBACTERIUM TUBERCULOSIS METHYLTRANSFERASE RV2067C JRNL TITL 2 MANIPULATES HOST EPIGENETIC PROGRAMMING TO PROMOTE ITS OWN JRNL TITL 3 SURVIVAL. JRNL REF NAT COMMUN V. 14 8497 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 38129415 JRNL DOI 10.1038/S41467-023-43940-6 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2600 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3575 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6068 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.247 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.771 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6298 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5858 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8581 ; 1.337 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13423 ; 1.190 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 757 ; 7.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;30.279 ;20.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 974 ;14.850 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;16.414 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 794 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7089 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1533 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3049 ; 1.770 ; 4.740 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3049 ; 1.770 ; 4.740 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3799 ; 2.767 ; 7.104 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 18 405 B 18 405 11978 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7908 51.0260 89.3611 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.2079 REMARK 3 T33: 0.0098 T12: -0.0417 REMARK 3 T13: -0.0263 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.0838 L22: 1.5944 REMARK 3 L33: 1.2114 L12: 0.1610 REMARK 3 L13: -0.0192 L23: -0.7341 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: 0.1331 S13: -0.0508 REMARK 3 S21: -0.1073 S22: -0.0210 S23: 0.0689 REMARK 3 S31: 0.1615 S32: -0.1011 S33: -0.0677 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 502 REMARK 3 ORIGIN FOR THE GROUP (A): -28.1159 81.6364 64.2428 REMARK 3 T TENSOR REMARK 3 T11: 0.2351 T22: 0.2098 REMARK 3 T33: 0.0572 T12: 0.0153 REMARK 3 T13: -0.0186 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.3296 L22: 1.0880 REMARK 3 L33: 0.6345 L12: -0.8550 REMARK 3 L13: 0.2275 L23: 0.0675 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.1005 S13: 0.1263 REMARK 3 S21: -0.2774 S22: -0.0615 S23: 0.0679 REMARK 3 S31: -0.0919 S32: -0.0555 S33: 0.0436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8HKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.699996 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.12 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 10, 2022 REMARK 200 BUILT=20220820 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51986 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.38 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 25.63 REMARK 200 R MERGE FOR SHELL (I) : 2.22300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3, CRANK2 2.0.253 REMARK 200 STARTING MODEL: DETERMINED USING IODINE SAD; EXPERIMENTAL PHASING REMARK 200 REMARK 200 REMARK: ROD SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUFFER: 0.1 M IMIDAZOLE/MES ACID, PH REMARK 280 6.5: PRECIPITANT: 20% W/V POLYETHYLENE GLYCOL 500* MONOMETHYL REMARK 280 ETHER + 10% W/V POLYETHYLENE GLYCOL 20,000: ADDITIVE: 0.03 M REMARK 280 SODIUM NITRATE + 0.03 M SODIUM PHOSPHATE DIBASIC + 0.03 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.30500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.57500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.15250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.57500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.45750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.57500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.15250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 162.45750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.30500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 HIS A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 ALA A 8 REMARK 465 ASP A 9 REMARK 465 ILE A 10 REMARK 465 VAL A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 GLN A 14 REMARK 465 TYR A 15 REMARK 465 LYS A 209 REMARK 465 ALA A 210 REMARK 465 ARG A 211 REMARK 465 ASP A 212 REMARK 465 LEU A 213 REMARK 465 LEU A 214 REMARK 465 GLY A 372 REMARK 465 GLU A 373 REMARK 465 PRO A 374 REMARK 465 SER A 375 REMARK 465 GLY A 376 REMARK 465 GLY A 377 REMARK 465 SER A 406 REMARK 465 GLY A 407 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 HIS B 5 REMARK 465 PRO B 6 REMARK 465 ARG B 7 REMARK 465 ALA B 8 REMARK 465 ASP B 9 REMARK 465 ILE B 10 REMARK 465 VAL B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLN B 14 REMARK 465 TYR B 15 REMARK 465 HIS B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 372 REMARK 465 GLU B 373 REMARK 465 PRO B 374 REMARK 465 SER B 375 REMARK 465 SER B 406 REMARK 465 GLY B 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 143 CD CE NZ REMARK 470 ARG A 227 CD NE CZ NH1 NH2 REMARK 470 LYS B 80 CE NZ REMARK 470 LYS B 143 CD CE NZ REMARK 470 ARG B 358 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 370 51.13 -91.29 REMARK 500 ALA B 210 78.55 -100.46 REMARK 500 TYR B 308 -11.72 -140.49 REMARK 500 ARG B 370 50.40 -91.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 8HKR A 1 407 UNP P9WLL9 Y2067_MYCTU 1 407 DBREF 8HKR B 1 407 UNP P9WLL9 Y2067_MYCTU 1 407 SEQADV 8HKR GLY A -2 UNP P9WLL9 EXPRESSION TAG SEQADV 8HKR ALA A -1 UNP P9WLL9 EXPRESSION TAG SEQADV 8HKR MET A 0 UNP P9WLL9 EXPRESSION TAG SEQADV 8HKR VAL A 1 UNP P9WLL9 MET 1 ENGINEERED MUTATION SEQADV 8HKR GLY B -2 UNP P9WLL9 EXPRESSION TAG SEQADV 8HKR ALA B -1 UNP P9WLL9 EXPRESSION TAG SEQADV 8HKR MET B 0 UNP P9WLL9 EXPRESSION TAG SEQADV 8HKR VAL B 1 UNP P9WLL9 MET 1 ENGINEERED MUTATION SEQRES 1 A 410 GLY ALA MET VAL THR ASP ASP HIS PRO ARG ALA ASP ILE SEQRES 2 A 410 VAL SER ARG GLN TYR HIS ARG TRP LEU TYR PRO HIS PRO SEQRES 3 A 410 ILE ALA ASP LEU GLU ALA TRP THR THR ALA ASN TRP GLU SEQRES 4 A 410 TRP PHE ASP PRO VAL HIS SER HIS ARG ILE LEU TRP PRO SEQRES 5 A 410 ASP ARG GLU TYR ARG PRO ASP LEU ASP ILE LEU ILE ALA SEQRES 6 A 410 GLY CYS GLY THR ASN GLN ALA ALA ILE PHE ALA PHE THR SEQRES 7 A 410 ASN ARG ALA ALA LYS VAL VAL ALA ILE ASP ILE SER ARG SEQRES 8 A 410 PRO ALA LEU ASP HIS GLN GLN TYR LEU LYS ASP LYS HIS SEQRES 9 A 410 GLY LEU ALA ASN LEU GLU LEU HIS LEU LEU PRO ILE GLU SEQRES 10 A 410 GLU LEU ALA THR LEU GLY ARG ASP PHE ASP LEU VAL VAL SEQRES 11 A 410 SER THR GLY VAL LEU HIS HIS LEU ALA ASP PRO ARG ALA SEQRES 12 A 410 GLY MET LYS GLU LEU ALA HIS CYS LEU ARG ARG ASP GLY SEQRES 13 A 410 VAL VAL ALA ALA MET LEU TYR GLY LYS TYR GLY ARG ILE SEQRES 14 A 410 GLY VAL GLU LEU LEU GLY SER VAL PHE ARG ASP LEU GLY SEQRES 15 A 410 LEU GLY GLN ASP ASP ALA SER ILE LYS LEU ALA LYS GLU SEQRES 16 A 410 ALA ILE SER LEU LEU PRO THR TYR HIS PRO LEU ARG ASN SEQRES 17 A 410 TYR LEU THR LYS ALA ARG ASP LEU LEU SER ASP SER ALA SEQRES 18 A 410 LEU VAL ASP THR PHE LEU HIS GLY ARG GLN ARG SER TYR SEQRES 19 A 410 THR VAL GLU GLU CYS VAL ASP LEU VAL THR SER ALA GLY SEQRES 20 A 410 LEU VAL PHE GLN GLY TRP PHE HIS LYS ALA PRO TYR TYR SEQRES 21 A 410 PRO HIS ASP PHE PHE VAL PRO ASN SER GLU PHE TYR ALA SEQRES 22 A 410 ALA VAL ASN THR LEU PRO GLU VAL LYS ALA TRP SER VAL SEQRES 23 A 410 MET GLU ARG LEU GLU THR LEU ASN ALA THR HIS LEU PHE SEQRES 24 A 410 MET ALA CYS ARG ARG ASP ARG PRO LYS GLU GLN TYR THR SEQRES 25 A 410 ILE ASP PHE SER THR VAL ALA ALA LEU ASP TYR VAL PRO SEQRES 26 A 410 LEU MET ARG THR ARG CYS GLY VAL SER GLY THR ASP MET SEQRES 27 A 410 PHE TRP PRO GLY TRP ARG MET ALA PRO SER PRO ALA GLN SEQRES 28 A 410 LEU ALA PHE LEU GLN GLN VAL ASP GLY ARG ARG THR ILE SEQRES 29 A 410 ARG GLU ILE ALA GLY CYS VAL ALA ARG THR GLY GLU PRO SEQRES 30 A 410 SER GLY GLY SER LEU ALA ASP LEU GLU GLU PHE GLY ARG SEQRES 31 A 410 LYS LEU PHE GLN SER LEU TRP ARG LEU ASP PHE VAL ALA SEQRES 32 A 410 VAL ALA LEU PRO ALA SER GLY SEQRES 1 B 410 GLY ALA MET VAL THR ASP ASP HIS PRO ARG ALA ASP ILE SEQRES 2 B 410 VAL SER ARG GLN TYR HIS ARG TRP LEU TYR PRO HIS PRO SEQRES 3 B 410 ILE ALA ASP LEU GLU ALA TRP THR THR ALA ASN TRP GLU SEQRES 4 B 410 TRP PHE ASP PRO VAL HIS SER HIS ARG ILE LEU TRP PRO SEQRES 5 B 410 ASP ARG GLU TYR ARG PRO ASP LEU ASP ILE LEU ILE ALA SEQRES 6 B 410 GLY CYS GLY THR ASN GLN ALA ALA ILE PHE ALA PHE THR SEQRES 7 B 410 ASN ARG ALA ALA LYS VAL VAL ALA ILE ASP ILE SER ARG SEQRES 8 B 410 PRO ALA LEU ASP HIS GLN GLN TYR LEU LYS ASP LYS HIS SEQRES 9 B 410 GLY LEU ALA ASN LEU GLU LEU HIS LEU LEU PRO ILE GLU SEQRES 10 B 410 GLU LEU ALA THR LEU GLY ARG ASP PHE ASP LEU VAL VAL SEQRES 11 B 410 SER THR GLY VAL LEU HIS HIS LEU ALA ASP PRO ARG ALA SEQRES 12 B 410 GLY MET LYS GLU LEU ALA HIS CYS LEU ARG ARG ASP GLY SEQRES 13 B 410 VAL VAL ALA ALA MET LEU TYR GLY LYS TYR GLY ARG ILE SEQRES 14 B 410 GLY VAL GLU LEU LEU GLY SER VAL PHE ARG ASP LEU GLY SEQRES 15 B 410 LEU GLY GLN ASP ASP ALA SER ILE LYS LEU ALA LYS GLU SEQRES 16 B 410 ALA ILE SER LEU LEU PRO THR TYR HIS PRO LEU ARG ASN SEQRES 17 B 410 TYR LEU THR LYS ALA ARG ASP LEU LEU SER ASP SER ALA SEQRES 18 B 410 LEU VAL ASP THR PHE LEU HIS GLY ARG GLN ARG SER TYR SEQRES 19 B 410 THR VAL GLU GLU CYS VAL ASP LEU VAL THR SER ALA GLY SEQRES 20 B 410 LEU VAL PHE GLN GLY TRP PHE HIS LYS ALA PRO TYR TYR SEQRES 21 B 410 PRO HIS ASP PHE PHE VAL PRO ASN SER GLU PHE TYR ALA SEQRES 22 B 410 ALA VAL ASN THR LEU PRO GLU VAL LYS ALA TRP SER VAL SEQRES 23 B 410 MET GLU ARG LEU GLU THR LEU ASN ALA THR HIS LEU PHE SEQRES 24 B 410 MET ALA CYS ARG ARG ASP ARG PRO LYS GLU GLN TYR THR SEQRES 25 B 410 ILE ASP PHE SER THR VAL ALA ALA LEU ASP TYR VAL PRO SEQRES 26 B 410 LEU MET ARG THR ARG CYS GLY VAL SER GLY THR ASP MET SEQRES 27 B 410 PHE TRP PRO GLY TRP ARG MET ALA PRO SER PRO ALA GLN SEQRES 28 B 410 LEU ALA PHE LEU GLN GLN VAL ASP GLY ARG ARG THR ILE SEQRES 29 B 410 ARG GLU ILE ALA GLY CYS VAL ALA ARG THR GLY GLU PRO SEQRES 30 B 410 SER GLY GLY SER LEU ALA ASP LEU GLU GLU PHE GLY ARG SEQRES 31 B 410 LYS LEU PHE GLN SER LEU TRP ARG LEU ASP PHE VAL ALA SEQRES 32 B 410 VAL ALA LEU PRO ALA SER GLY HET PO4 A 501 5 HET SAH A 502 26 HET PO4 B 501 5 HET SAH B 502 26 HETNAM PO4 PHOSPHATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 7 HOH *54(H2 O) HELIX 1 AA1 ASP A 26 ASN A 34 1 9 HELIX 2 AA2 ASP A 39 TRP A 48 1 10 HELIX 3 AA3 ASN A 67 ASN A 76 1 10 HELIX 4 AA4 SER A 87 GLY A 102 1 16 HELIX 5 AA5 PRO A 112 GLY A 120 5 9 HELIX 6 AA6 VAL A 131 LEU A 135 5 5 HELIX 7 AA7 ASP A 137 CYS A 148 1 12 HELIX 8 AA8 LYS A 162 GLY A 164 5 3 HELIX 9 AA9 ARG A 165 LEU A 178 1 14 HELIX 10 AB1 ASP A 183 LEU A 196 1 14 HELIX 11 AB2 HIS A 201 THR A 208 1 8 HELIX 12 AB3 ASP A 216 LEU A 224 1 9 HELIX 13 AB4 THR A 232 ALA A 243 1 12 HELIX 14 AB5 LYS A 253 TYR A 257 5 5 HELIX 15 AB6 SER A 266 LEU A 275 1 10 HELIX 16 AB7 PRO A 276 GLU A 288 1 13 HELIX 17 AB8 PRO A 304 TYR A 308 5 5 HELIX 18 AB9 THR A 314 TYR A 320 5 7 HELIX 19 AC1 SER A 345 GLN A 353 1 9 HELIX 20 AC2 THR A 360 ARG A 370 1 11 HELIX 21 AC3 LEU A 379 ARG A 395 1 17 HELIX 22 AC4 ASP B 26 ASN B 34 1 9 HELIX 23 AC5 ASP B 39 TRP B 48 1 10 HELIX 24 AC6 ASN B 67 ASN B 76 1 10 HELIX 25 AC7 SER B 87 GLY B 102 1 16 HELIX 26 AC8 PRO B 112 GLY B 120 5 9 HELIX 27 AC9 VAL B 131 LEU B 135 5 5 HELIX 28 AD1 ASP B 137 HIS B 147 1 11 HELIX 29 AD2 LYS B 162 GLY B 164 5 3 HELIX 30 AD3 ARG B 165 LEU B 178 1 14 HELIX 31 AD4 ASP B 183 LEU B 197 1 15 HELIX 32 AD5 PRO B 202 ALA B 210 1 9 HELIX 33 AD6 SER B 215 LEU B 224 1 10 HELIX 34 AD7 THR B 232 ALA B 243 1 12 HELIX 35 AD8 LYS B 253 TYR B 257 5 5 HELIX 36 AD9 SER B 266 ASN B 273 1 8 HELIX 37 AE1 PRO B 276 GLU B 288 1 13 HELIX 38 AE2 PRO B 304 TYR B 308 5 5 HELIX 39 AE3 THR B 314 TYR B 320 5 7 HELIX 40 AE4 SER B 345 GLN B 353 1 9 HELIX 41 AE5 THR B 360 ARG B 370 1 11 HELIX 42 AE6 SER B 378 ARG B 395 1 18 SHEET 1 AA1 7 LEU A 106 LEU A 110 0 SHEET 2 AA1 7 LYS A 80 ASP A 85 1 N ALA A 83 O GLU A 107 SHEET 3 AA1 7 ASP A 58 ALA A 62 1 N ILE A 59 O VAL A 82 SHEET 4 AA1 7 PHE A 123 THR A 129 1 O VAL A 127 N LEU A 60 SHEET 5 AA1 7 LEU A 149 TYR A 160 1 O ALA A 156 N VAL A 126 SHEET 6 AA1 7 THR A 293 ARG A 300 -1 O HIS A 294 N LEU A 159 SHEET 7 AA1 7 LEU A 245 TRP A 250 -1 N VAL A 246 O CYS A 299 SHEET 1 AA2 2 VAL A 321 MET A 324 0 SHEET 2 AA2 2 VAL A 399 ALA A 402 -1 O ALA A 400 N LEU A 323 SHEET 1 AA3 3 GLY A 329 SER A 331 0 SHEET 2 AA3 3 ASP A 334 TRP A 337 -1 O PHE A 336 N GLY A 329 SHEET 3 AA3 3 TRP A 340 MET A 342 -1 O TRP A 340 N TRP A 337 SHEET 1 AA4 7 LEU B 106 LEU B 110 0 SHEET 2 AA4 7 LYS B 80 ASP B 85 1 N ALA B 83 O GLU B 107 SHEET 3 AA4 7 ASP B 58 ALA B 62 1 N ILE B 59 O VAL B 82 SHEET 4 AA4 7 PHE B 123 THR B 129 1 O VAL B 127 N LEU B 60 SHEET 5 AA4 7 LEU B 149 TYR B 160 1 O ALA B 156 N VAL B 126 SHEET 6 AA4 7 THR B 293 ARG B 300 -1 O HIS B 294 N LEU B 159 SHEET 7 AA4 7 LEU B 245 TRP B 250 -1 N VAL B 246 O CYS B 299 SHEET 1 AA5 2 VAL B 321 MET B 324 0 SHEET 2 AA5 2 VAL B 399 ALA B 402 -1 O ALA B 400 N LEU B 323 SHEET 1 AA6 3 GLY B 329 SER B 331 0 SHEET 2 AA6 3 ASP B 334 TRP B 337 -1 O PHE B 336 N GLY B 329 SHEET 3 AA6 3 TRP B 340 MET B 342 -1 O TRP B 340 N TRP B 337 CISPEP 1 TYR A 20 PRO A 21 0 -5.60 CISPEP 2 TYR B 20 PRO B 21 0 -5.19 CRYST1 109.150 109.150 216.610 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004617 0.00000