HEADER PROTEIN BINDING 29-NOV-22 8HL7 TITLE CRYSTAL STRUCTURE OF P97 N/D1 IN COMPLEX WITH A VALOSIN-CONTAINING TITLE 2 PROTEIN METHYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN N-LYSINE METHYLTRANSFERASE METTL21D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHYLTRANSFERASE-LIKE PROTEIN 21D; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: TER ATPASE,15S MG(2+)-ATPASE P97 SUBUNIT,VALOSIN-CONTAINING COMPND 12 PROTEIN,VCP; COMPND 13 EC: 3.6.4.6; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL21D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: VCP; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VCPKMT, METHYLTRANSFERASE, TRIMETHYLATED LYSINE, ASPL, ASPSCR1, KEYWDS 2 UBXD9, TUG, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.KANG,J.K.YANG REVDAT 2 02-AUG-23 8HL7 1 JRNL REVDAT 1 12-JUL-23 8HL7 0 JRNL AUTH T.Q.NGUYEN,S.KOH,J.KWON,S.JANG,W.KANG,J.K.YANG JRNL TITL STRUCTURAL BASIS FOR RECOGNITION AND METHYLATION OF P97 BY JRNL TITL 2 METTL21D, A VALOSIN-CONTAINING PROTEIN LYSINE JRNL TITL 3 METHYLTRANSFERASE. JRNL REF ISCIENCE V. 26 07222 2023 JRNL REFN ESSN 2589-0042 JRNL PMID 37456834 JRNL DOI 10.1016/J.ISCI.2023.107222 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5700 - 5.5900 0.98 2950 180 0.2150 0.2406 REMARK 3 2 5.5900 - 4.4400 1.00 2843 146 0.1822 0.2289 REMARK 3 3 4.4400 - 3.8800 1.00 2761 141 0.1858 0.2338 REMARK 3 4 3.8800 - 3.5300 1.00 2756 133 0.2098 0.2507 REMARK 3 5 3.5300 - 3.2700 1.00 2715 150 0.2441 0.2832 REMARK 3 6 3.2700 - 3.0800 1.00 2659 152 0.2549 0.3433 REMARK 3 7 3.0800 - 2.9300 1.00 2758 101 0.2801 0.3642 REMARK 3 8 2.9300 - 2.8000 1.00 2721 118 0.3114 0.3934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.431 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.037 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4743 REMARK 3 ANGLE : 1.340 6448 REMARK 3 CHIRALITY : 0.066 764 REMARK 3 PLANARITY : 0.010 824 REMARK 3 DIHEDRAL : 18.601 1708 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.6983 120.6104 54.3677 REMARK 3 T TENSOR REMARK 3 T11: 0.8011 T22: 0.3067 REMARK 3 T33: 0.4393 T12: 0.0693 REMARK 3 T13: 0.1023 T23: -0.1495 REMARK 3 L TENSOR REMARK 3 L11: 4.4575 L22: 3.0370 REMARK 3 L33: 3.9489 L12: -1.1172 REMARK 3 L13: -0.7815 L23: 2.3802 REMARK 3 S TENSOR REMARK 3 S11: -0.1754 S12: -0.3558 S13: 0.3167 REMARK 3 S21: 0.2636 S22: 0.2567 S23: -0.0265 REMARK 3 S31: 0.1070 S32: 0.4525 S33: -0.0804 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1830 116.1065 62.9502 REMARK 3 T TENSOR REMARK 3 T11: 0.9142 T22: 0.5084 REMARK 3 T33: 0.6282 T12: -0.0564 REMARK 3 T13: 0.3359 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 0.1747 L22: 8.5283 REMARK 3 L33: 5.1790 L12: -1.1914 REMARK 3 L13: -0.1550 L23: 2.4391 REMARK 3 S TENSOR REMARK 3 S11: -0.5375 S12: -0.3060 S13: -0.2983 REMARK 3 S21: 0.9207 S22: 0.2084 S23: 1.2654 REMARK 3 S31: 0.7125 S32: -0.5625 S33: 0.3362 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8423 120.2337 46.5941 REMARK 3 T TENSOR REMARK 3 T11: 0.5344 T22: 0.6675 REMARK 3 T33: 0.6778 T12: -0.0278 REMARK 3 T13: 0.0727 T23: -0.1888 REMARK 3 L TENSOR REMARK 3 L11: 3.5356 L22: 5.2425 REMARK 3 L33: 7.1759 L12: -1.0372 REMARK 3 L13: -1.3775 L23: 1.1693 REMARK 3 S TENSOR REMARK 3 S11: -0.2016 S12: 0.6876 S13: -0.1679 REMARK 3 S21: 0.0389 S22: -0.1872 S23: 1.1258 REMARK 3 S31: 0.2613 S32: -1.9119 S33: 0.3514 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.4230 86.7105 19.6546 REMARK 3 T TENSOR REMARK 3 T11: 0.7366 T22: 0.3392 REMARK 3 T33: 0.5174 T12: -0.0891 REMARK 3 T13: -0.0095 T23: -0.1894 REMARK 3 L TENSOR REMARK 3 L11: 2.6323 L22: 7.6340 REMARK 3 L33: 3.6331 L12: -1.0099 REMARK 3 L13: -0.2882 L23: 2.0630 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: 0.6288 S13: -0.5048 REMARK 3 S21: -0.6383 S22: 0.0819 S23: 0.5844 REMARK 3 S31: 0.0230 S32: -0.1949 S33: 0.0025 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.2308 88.8896 31.2556 REMARK 3 T TENSOR REMARK 3 T11: 0.6811 T22: 0.3477 REMARK 3 T33: 0.5385 T12: -0.1043 REMARK 3 T13: 0.0075 T23: -0.2064 REMARK 3 L TENSOR REMARK 3 L11: 2.8159 L22: 3.2156 REMARK 3 L33: 3.6211 L12: -0.5740 REMARK 3 L13: 1.0385 L23: 0.9082 REMARK 3 S TENSOR REMARK 3 S11: 0.1341 S12: 0.3226 S13: -0.0514 REMARK 3 S21: 0.3361 S22: 0.0757 S23: -0.6225 REMARK 3 S31: 0.0979 S32: 0.5821 S33: -0.2391 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.6182 119.9976 25.3457 REMARK 3 T TENSOR REMARK 3 T11: 1.1998 T22: 0.4155 REMARK 3 T33: 0.6725 T12: -0.0962 REMARK 3 T13: 0.1758 T23: -0.1913 REMARK 3 L TENSOR REMARK 3 L11: 0.4026 L22: 1.7852 REMARK 3 L33: 0.0928 L12: -0.2102 REMARK 3 L13: -0.0558 L23: 0.4069 REMARK 3 S TENSOR REMARK 3 S11: 0.2778 S12: 0.0254 S13: 0.1602 REMARK 3 S21: -0.5196 S22: 0.0599 S23: -0.0564 REMARK 3 S31: -0.3462 S32: 0.1327 S33: -0.0610 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.2910 113.5708 28.4365 REMARK 3 T TENSOR REMARK 3 T11: 0.8397 T22: 0.3683 REMARK 3 T33: 0.5077 T12: -0.0947 REMARK 3 T13: 0.0941 T23: -0.2306 REMARK 3 L TENSOR REMARK 3 L11: 1.4291 L22: 3.2562 REMARK 3 L33: 4.1448 L12: -0.5010 REMARK 3 L13: -0.9664 L23: 1.7474 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: -0.0932 S13: 0.0745 REMARK 3 S21: -0.1875 S22: 0.2099 S23: -0.2039 REMARK 3 S31: 0.0038 S32: 0.6751 S33: -0.5571 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.2550 115.1479 34.5113 REMARK 3 T TENSOR REMARK 3 T11: 0.7284 T22: 0.3076 REMARK 3 T33: 0.3879 T12: -0.0305 REMARK 3 T13: 0.0898 T23: -0.1854 REMARK 3 L TENSOR REMARK 3 L11: 4.6958 L22: 5.9718 REMARK 3 L33: 6.5309 L12: -0.3528 REMARK 3 L13: -1.8837 L23: 2.4598 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.0937 S13: 0.1756 REMARK 3 S21: -0.1527 S22: -0.3350 S23: 0.5841 REMARK 3 S31: 0.0817 S32: -0.4478 S33: 0.3730 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 359 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.1947 109.3587 2.0668 REMARK 3 T TENSOR REMARK 3 T11: 1.0390 T22: 0.7034 REMARK 3 T33: 0.4166 T12: -0.0361 REMARK 3 T13: 0.0812 T23: -0.1882 REMARK 3 L TENSOR REMARK 3 L11: 2.1784 L22: 1.5993 REMARK 3 L33: 5.0966 L12: -1.1310 REMARK 3 L13: -1.7120 L23: 1.9001 REMARK 3 S TENSOR REMARK 3 S11: 0.6040 S12: 0.8497 S13: -0.0212 REMARK 3 S21: -0.8907 S22: -0.5529 S23: 0.0484 REMARK 3 S31: -1.3536 S32: -0.1749 S33: -0.0882 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300033829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26103 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % (W/V) POLYETHYLENE GLYCOL (PEG) REMARK 280 3350, 0.1M NA-HEPES (PH 7.5), 2 % (V/V) TACSIMATE (PH 7.0), AND REMARK 280 3 % (W/V) 6-AMINOHEXANOIC ACID, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 236.95500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.39000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 355.43250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.39000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.47750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 355.43250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 118.47750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 236.95500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 ASP A 61 REMARK 465 GLY A 62 REMARK 465 ALA A 63 REMARK 465 HIS A 64 REMARK 465 GLU A 131 REMARK 465 GLY A 132 REMARK 465 PHE A 133 REMARK 465 LYS B 190 REMARK 465 ARG B 191 REMARK 465 GLU B 192 REMARK 465 ASP B 193 REMARK 465 GLU B 194 REMARK 465 GLU B 195 REMARK 465 GLU B 196 REMARK 465 SER B 197 REMARK 465 LEU B 198 REMARK 465 ASN B 199 REMARK 465 GLU B 433 REMARK 465 ASP B 434 REMARK 465 GLU B 435 REMARK 465 THR B 436 REMARK 465 ILE B 437 REMARK 465 ASP B 438 REMARK 465 ALA B 439 REMARK 465 GLU B 440 REMARK 465 VAL B 441 REMARK 465 MET B 442 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 ILE A 162 CG1 CG2 CD1 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 ILE A 169 CG1 CG2 CD1 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 LEU A 194 CG CD1 CD2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 ARG A 221 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 GLN B 50 CG CD OE1 NE2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 ASP B 107 CG OD1 OD2 REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ARG B 113 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 115 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 ASP B 169 CG OD1 OD2 REMARK 470 SER B 171 OG REMARK 470 ASP B 179 CG OD1 OD2 REMARK 470 HIS B 183 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 ILE B 189 CG1 CG2 CD1 REMARK 470 GLU B 200 CG CD OE1 OE2 REMARK 470 ARG B 210 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 LYS B 231 CG CD CE NZ REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 LEU B 253 CG CD1 CD2 REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 LYS B 295 CG CD CE NZ REMARK 470 ARG B 313 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 319 CG CD OE1 OE2 REMARK 470 GLU B 321 CG CD OE1 OE2 REMARK 470 LYS B 336 CG CD CE NZ REMARK 470 GLN B 337 CG CD OE1 NE2 REMARK 470 ASN B 348 CG OD1 ND2 REMARK 470 ARG B 365 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 378 CG CD1 CD2 REMARK 470 LYS B 386 CG CD CE NZ REMARK 470 LYS B 389 CG CD CE NZ REMARK 470 ASP B 392 CG OD1 OD2 REMARK 470 ASP B 395 CG OD1 OD2 REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 470 GLN B 398 CG CD OE1 NE2 REMARK 470 ASN B 401 CG OD1 ND2 REMARK 470 GLU B 402 CG CD OE1 OE2 REMARK 470 LYS B 426 CG CD CE NZ REMARK 470 LEU B 445 CG CD1 CD2 REMARK 470 ARG B 453 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 458 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 169 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 PRO B 170 CB - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 PRO B 170 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 PRO B 172 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 TYR B 173 CB - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 CYS B 174 CB - CA - C ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 113 0.24 -66.31 REMARK 500 TYR A 147 -8.19 -154.93 REMARK 500 LEU A 152 -96.74 -120.04 REMARK 500 ASP A 161 -70.75 -72.59 REMARK 500 ASP B 107 41.21 -99.47 REMARK 500 ASN B 129 90.03 -69.58 REMARK 500 TYR B 134 -63.35 -120.35 REMARK 500 MET B 158 -16.55 71.37 REMARK 500 TYR B 173 157.73 69.55 REMARK 500 CYS B 174 158.41 178.66 REMARK 500 GLU B 187 110.87 -176.26 REMARK 500 CYS B 209 48.63 -142.46 REMARK 500 GLU B 305 72.75 66.09 REMARK 500 ARG B 323 56.25 -98.21 REMARK 500 LYS B 336 -139.69 67.74 REMARK 500 ALA B 339 -4.91 72.44 REMARK 500 ARG B 362 -73.76 -87.92 REMARK 500 ASP B 373 -163.08 -72.48 REMARK 500 HIS B 404 -80.36 -84.46 REMARK 500 ASP B 431 28.83 -78.73 REMARK 500 SER B 444 -148.13 -137.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 8HL7 A 16 222 UNP Q9H867 MT21D_HUMAN 16 222 DBREF 8HL7 B 23 458 UNP P55072 TERA_HUMAN 23 458 SEQADV 8HL7 MET A 15 UNP Q9H867 INITIATING METHIONINE SEQADV 8HL7 VAL A 130 UNP Q9H867 ILE 130 ENGINEERED MUTATION SEQRES 1 A 208 MET PHE VAL ARG VAL LEU GLU LYS ARG ASP GLY THR VAL SEQRES 2 A 208 LEU ARG LEU GLN GLN TYR SER SER GLY GLY VAL GLY CYS SEQRES 3 A 208 VAL VAL TRP ASP ALA ALA ILE VAL LEU SER LYS TYR LEU SEQRES 4 A 208 GLU THR PRO GLU PHE SER GLY ASP GLY ALA HIS ALA LEU SEQRES 5 A 208 SER ARG ARG SER VAL LEU GLU LEU GLY SER GLY THR GLY SEQRES 6 A 208 ALA VAL GLY LEU MET ALA ALA THR LEU GLY ALA ASP VAL SEQRES 7 A 208 VAL VAL THR ASP LEU GLU GLU LEU GLN ASP LEU LEU LYS SEQRES 8 A 208 MET ASN ILE ASN MET ASN LYS HIS LEU VAL THR GLY SER SEQRES 9 A 208 VAL GLN ALA LYS VAL LEU LYS TRP GLY GLU GLU VAL GLU SEQRES 10 A 208 GLY PHE PRO SER PRO PRO ASP PHE ILE LEU MET ALA ASP SEQRES 11 A 208 CYS ILE TYR TYR GLU GLU SER LEU GLU PRO LEU LEU LYS SEQRES 12 A 208 THR LEU LYS ASP ILE SER GLY PHE GLU THR CYS ILE ILE SEQRES 13 A 208 CYS CYS TYR GLU GLN ARG THR MET GLY LYS ASN PRO GLU SEQRES 14 A 208 ILE GLU LYS LYS TYR PHE GLU LEU LEU GLN LEU ASP PHE SEQRES 15 A 208 ASP PHE GLU LYS ILE PRO LEU GLU LYS HIS ASP GLU GLU SEQRES 16 A 208 TYR ARG SER GLU ASP ILE HIS ILE ILE TYR ILE ARG LYS SEQRES 1 B 436 PRO ASN ARG LEU ILE VAL ASP GLU ALA ILE ASN GLU ASP SEQRES 2 B 436 ASN SER VAL VAL SER LEU SER GLN PRO LYS MET ASP GLU SEQRES 3 B 436 LEU GLN LEU PHE ARG GLY ASP THR VAL LEU LEU LYS GLY SEQRES 4 B 436 LYS LYS ARG ARG GLU ALA VAL CYS ILE VAL LEU SER ASP SEQRES 5 B 436 ASP THR CYS SER ASP GLU LYS ILE ARG MET ASN ARG VAL SEQRES 6 B 436 VAL ARG ASN ASN LEU ARG VAL ARG LEU GLY ASP VAL ILE SEQRES 7 B 436 SER ILE GLN PRO CYS PRO ASP VAL LYS TYR GLY LYS ARG SEQRES 8 B 436 ILE HIS VAL LEU PRO ILE ASP ASP THR VAL GLU GLY ILE SEQRES 9 B 436 THR GLY ASN LEU PHE GLU VAL TYR LEU LYS PRO TYR PHE SEQRES 10 B 436 LEU GLU ALA TYR ARG PRO ILE ARG LYS GLY ASP ILE PHE SEQRES 11 B 436 LEU VAL ARG GLY GLY MET ARG ALA VAL GLU PHE LYS VAL SEQRES 12 B 436 VAL GLU THR ASP PRO SER PRO TYR CYS ILE VAL ALA PRO SEQRES 13 B 436 ASP THR VAL ILE HIS CYS GLU GLY GLU PRO ILE LYS ARG SEQRES 14 B 436 GLU ASP GLU GLU GLU SER LEU ASN GLU VAL GLY TYR ASP SEQRES 15 B 436 ASP ILE GLY GLY CYS ARG LYS GLN LEU ALA GLN ILE LYS SEQRES 16 B 436 GLU MET VAL GLU LEU PRO LEU ARG HIS PRO ALA LEU PHE SEQRES 17 B 436 LYS ALA ILE GLY VAL LYS PRO PRO ARG GLY ILE LEU LEU SEQRES 18 B 436 TYR GLY PRO PRO GLY THR GLY LYS THR LEU ILE ALA ARG SEQRES 19 B 436 ALA VAL ALA ASN GLU THR GLY ALA PHE PHE PHE LEU ILE SEQRES 20 B 436 ASN GLY PRO GLU ILE MET SER LYS LEU ALA GLY GLU SER SEQRES 21 B 436 GLU SER ASN LEU ARG LYS ALA PHE GLU GLU ALA GLU LYS SEQRES 22 B 436 ASN ALA PRO ALA ILE ILE PHE ILE ASP GLU LEU ASP ALA SEQRES 23 B 436 ILE ALA PRO LYS ARG GLU M3L THR HIS GLY GLU VAL GLU SEQRES 24 B 436 ARG ARG ILE VAL SER GLN LEU LEU THR LEU MET ASP GLY SEQRES 25 B 436 LEU LYS GLN ARG ALA HIS VAL ILE VAL MET ALA ALA THR SEQRES 26 B 436 ASN ARG PRO ASN SER ILE ASP PRO ALA LEU ARG ARG PHE SEQRES 27 B 436 GLY ARG PHE ASP ARG GLU VAL ASP ILE GLY ILE PRO ASP SEQRES 28 B 436 ALA THR GLY ARG LEU GLU ILE LEU GLN ILE HIS THR LYS SEQRES 29 B 436 ASN MET LYS LEU ALA ASP ASP VAL ASP LEU GLU GLN VAL SEQRES 30 B 436 ALA ASN GLU THR HIS GLY HIS VAL GLY ALA ASP LEU ALA SEQRES 31 B 436 ALA LEU CYS SER GLU ALA ALA LEU GLN ALA ILE ARG LYS SEQRES 32 B 436 LYS MET ASP LEU ILE ASP LEU GLU ASP GLU THR ILE ASP SEQRES 33 B 436 ALA GLU VAL MET ASN SER LEU ALA VAL THR MET ASP ASP SEQRES 34 B 436 PHE ARG TRP ALA LEU SER GLN MODRES 8HL7 M3L B 315 LYS MODIFIED RESIDUE HET M3L B 315 12 HET SAH A 301 26 HET GOL A 302 6 HET GOL A 303 6 HET FMT A 304 3 HET ACT A 305 4 HET ADP B 501 27 HET FMT B 502 3 HET GOL B 503 6 HET EPE B 504 15 HETNAM M3L N-TRIMETHYLLYSINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM ACT ACETATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 2 M3L C9 H21 N2 O2 1+ FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 FMT 2(C H2 O2) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 ADP C10 H15 N5 O10 P2 FORMUL 11 EPE C8 H18 N2 O4 S FORMUL 12 HOH *10(H2 O) HELIX 1 AA1 GLY A 37 VAL A 41 5 5 HELIX 2 AA2 TRP A 43 GLU A 54 1 12 HELIX 3 AA3 GLY A 79 THR A 87 1 9 HELIX 4 AA4 LEU A 97 GLU A 99 5 3 HELIX 5 AA5 LEU A 100 LYS A 112 1 13 HELIX 6 AA6 HIS A 113 VAL A 115 5 3 HELIX 7 AA7 TYR A 148 SER A 151 5 4 HELIX 8 AA8 LEU A 152 SER A 163 1 12 HELIX 9 AA9 LYS A 180 GLN A 193 1 14 HELIX 10 AB1 PRO A 202 HIS A 206 5 5 HELIX 11 AB2 SER B 42 LEU B 49 1 8 HELIX 12 AB3 ASN B 85 LEU B 92 1 8 HELIX 13 AB4 ILE B 119 GLU B 124 1 6 HELIX 14 AB5 ASN B 129 TYR B 134 1 6 HELIX 15 AB6 TYR B 134 LEU B 140 1 7 HELIX 16 AB7 GLY B 202 ILE B 206 5 5 HELIX 17 AB8 CYS B 209 HIS B 226 1 18 HELIX 18 AB9 ALA B 228 GLY B 234 1 7 HELIX 19 AC1 GLY B 250 GLY B 263 1 14 HELIX 20 AC2 GLY B 271 LYS B 277 1 7 HELIX 21 AC3 GLY B 280 ASN B 296 1 17 HELIX 22 AC4 GLU B 305 ALA B 310 1 6 HELIX 23 AC5 ARG B 323 GLY B 334 1 12 HELIX 24 AC6 ARG B 349 ILE B 353 5 5 HELIX 25 AC7 ASP B 354 ARG B 359 5 6 HELIX 26 AC8 ASP B 373 THR B 385 1 13 HELIX 27 AC9 ASP B 395 GLU B 402 1 8 HELIX 28 AD1 VAL B 407 ASP B 428 1 22 HELIX 29 AD2 THR B 448 SER B 457 1 10 SHEET 1 AA1 2 PHE A 16 GLU A 21 0 SHEET 2 AA1 2 VAL A 27 GLN A 32 -1 O LEU A 28 N LEU A 20 SHEET 1 AA2 7 SER A 118 VAL A 123 0 SHEET 2 AA2 7 ASP A 91 ASP A 96 1 N VAL A 92 O SER A 118 SHEET 3 AA2 7 SER A 70 LEU A 74 1 N VAL A 71 O ASP A 91 SHEET 4 AA2 7 PHE A 139 ALA A 143 1 O LEU A 141 N LEU A 72 SHEET 5 AA2 7 CYS A 168 GLU A 174 1 O ILE A 170 N ILE A 140 SHEET 6 AA2 7 ILE A 215 ARG A 221 -1 O ILE A 218 N CYS A 171 SHEET 7 AA2 7 ASP A 197 LYS A 200 -1 N GLU A 199 O TYR A 219 SHEET 1 AA3 7 ARG B 25 GLU B 30 0 SHEET 2 AA3 7 LYS B 81 MET B 84 1 O ILE B 82 N ASP B 29 SHEET 3 AA3 7 VAL B 38 LEU B 41 -1 N SER B 40 O ARG B 83 SHEET 4 AA3 7 GLU B 66 SER B 73 1 O ILE B 70 N VAL B 39 SHEET 5 AA3 7 THR B 56 LYS B 60 -1 N LEU B 59 O ALA B 67 SHEET 6 AA3 7 VAL B 99 PRO B 104 -1 O GLN B 103 N LEU B 58 SHEET 7 AA3 7 ARG B 25 GLU B 30 -1 N LEU B 26 O ILE B 100 SHEET 1 AA4 4 ILE B 151 VAL B 154 0 SHEET 2 AA4 4 VAL B 161 GLU B 167 -1 O PHE B 163 N PHE B 152 SHEET 3 AA4 4 ARG B 113 PRO B 118 -1 N LEU B 117 O LYS B 164 SHEET 4 AA4 4 VAL B 181 HIS B 183 1 O VAL B 181 N ILE B 114 SHEET 1 AA5 2 ARG B 144 PRO B 145 0 SHEET 2 AA5 2 ILE B 175 VAL B 176 -1 O VAL B 176 N ARG B 144 SHEET 1 AA6 5 PHE B 265 ASN B 270 0 SHEET 2 AA6 5 ALA B 299 ASP B 304 1 O PHE B 302 N ILE B 269 SHEET 3 AA6 5 VAL B 341 THR B 347 1 O MET B 344 N ILE B 301 SHEET 4 AA6 5 GLY B 240 TYR B 244 1 N LEU B 243 O ALA B 345 SHEET 5 AA6 5 PHE B 363 ASP B 368 1 O ARG B 365 N LEU B 242 LINK C GLU B 314 N M3L B 315 1555 1555 1.33 LINK C M3L B 315 N THR B 316 1555 1555 1.33 CISPEP 1 ALA B 297 PRO B 298 0 -0.10 CRYST1 60.780 60.780 473.910 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016453 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002110 0.00000