data_8HL9 # _entry.id 8HL9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8HL9 pdb_00008hl9 10.2210/pdb8hl9/pdb WWPDB D_1300033839 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8HL9 _pdbx_database_status.recvd_initial_deposition_date 2022-11-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Si, Y.L.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Int.J.Biol.Macromol. _citation.journal_id_ASTM IJBMDR _citation.journal_id_CSD 0708 _citation.journal_id_ISSN 0141-8130 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 245 _citation.language ? _citation.page_first 125456 _citation.page_last 125456 _citation.title 'Linker remodels human Galectin-8 structure and regulates its hemagglutination and pro-apoptotic activity.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.ijbiomac.2023.125456 _citation.pdbx_database_id_PubMed 37331541 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Si, Y.' 1 ? primary 'Cai, J.' 2 ? primary 'Zhu, J.' 3 ? primary 'Wang, Y.' 4 ? primary 'Zhang, F.' 5 ? primary 'Meng, L.' 6 ? primary 'Huang, J.' 7 ? primary 'Shi, A.' 8 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8HL9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 52.900 _cell.length_a_esd ? _cell.length_b 52.900 _cell.length_b_esd ? _cell.length_c 126.749 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8HL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Galectin-8 16713.098 1 ? ? ? ? 2 water nat water 18.015 139 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Gal-8,Po66 carbohydrate-binding protein,Po66-CBP,Prostate carcinoma tumor antigen 1,PCTA-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SRENVPKSGTPQLRLPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSFLQESWG EEERNITSFPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; _entity_poly.pdbx_seq_one_letter_code_can ;SRENVPKSGTPQLRLPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSFLQESWG EEERNITSFPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ARG n 1 3 GLU n 1 4 ASN n 1 5 VAL n 1 6 PRO n 1 7 LYS n 1 8 SER n 1 9 GLY n 1 10 THR n 1 11 PRO n 1 12 GLN n 1 13 LEU n 1 14 ARG n 1 15 LEU n 1 16 PRO n 1 17 PHE n 1 18 ALA n 1 19 ALA n 1 20 ARG n 1 21 LEU n 1 22 ASN n 1 23 THR n 1 24 PRO n 1 25 MET n 1 26 GLY n 1 27 PRO n 1 28 GLY n 1 29 ARG n 1 30 THR n 1 31 VAL n 1 32 VAL n 1 33 VAL n 1 34 LYS n 1 35 GLY n 1 36 GLU n 1 37 VAL n 1 38 ASN n 1 39 ALA n 1 40 ASN n 1 41 ALA n 1 42 LYS n 1 43 SER n 1 44 PHE n 1 45 ASN n 1 46 VAL n 1 47 ASP n 1 48 LEU n 1 49 LEU n 1 50 ALA n 1 51 GLY n 1 52 LYS n 1 53 SER n 1 54 LYS n 1 55 ASP n 1 56 ILE n 1 57 ALA n 1 58 LEU n 1 59 HIS n 1 60 LEU n 1 61 ASN n 1 62 PRO n 1 63 ARG n 1 64 LEU n 1 65 ASN n 1 66 ILE n 1 67 LYS n 1 68 ALA n 1 69 PHE n 1 70 VAL n 1 71 ARG n 1 72 ASN n 1 73 SER n 1 74 PHE n 1 75 LEU n 1 76 GLN n 1 77 GLU n 1 78 SER n 1 79 TRP n 1 80 GLY n 1 81 GLU n 1 82 GLU n 1 83 GLU n 1 84 ARG n 1 85 ASN n 1 86 ILE n 1 87 THR n 1 88 SER n 1 89 PHE n 1 90 PRO n 1 91 PHE n 1 92 SER n 1 93 PRO n 1 94 GLY n 1 95 MET n 1 96 TYR n 1 97 PHE n 1 98 GLU n 1 99 MET n 1 100 ILE n 1 101 ILE n 1 102 TYR n 1 103 CYS n 1 104 ASP n 1 105 VAL n 1 106 ARG n 1 107 GLU n 1 108 PHE n 1 109 LYS n 1 110 VAL n 1 111 ALA n 1 112 VAL n 1 113 ASN n 1 114 GLY n 1 115 VAL n 1 116 HIS n 1 117 SER n 1 118 LEU n 1 119 GLU n 1 120 TYR n 1 121 LYS n 1 122 HIS n 1 123 ARG n 1 124 PHE n 1 125 LYS n 1 126 GLU n 1 127 LEU n 1 128 SER n 1 129 SER n 1 130 ILE n 1 131 ASP n 1 132 THR n 1 133 LEU n 1 134 GLU n 1 135 ILE n 1 136 ASN n 1 137 GLY n 1 138 ASP n 1 139 ILE n 1 140 HIS n 1 141 LEU n 1 142 LEU n 1 143 GLU n 1 144 VAL n 1 145 ARG n 1 146 SER n 1 147 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 147 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LGALS8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LEG8_HUMAN _struct_ref.pdbx_db_accession O00214 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SRENVPKSGTPQLRLPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSFLQESWG EEERNITSFPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; _struct_ref.pdbx_align_begin 171 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8HL9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O00214 _struct_ref_seq.db_align_beg 171 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 317 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 19 _struct_ref_seq.pdbx_auth_seq_align_end 165 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8HL9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Hepes pH 7.0, 0.2M MgCl2, 30% (W/V) PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-07-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8HL9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 19.62 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24410 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.63 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1173 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.52 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8HL9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 19.62 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24059 _refine.ls_number_reflns_R_free 1979 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.92 _refine.ls_percent_reflns_R_free 8.23 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2166 _refine.ls_R_factor_R_free 0.2511 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2135 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.37 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.17 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1136 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 1275 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 19.62 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1161 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.910 ? 1566 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 6.788 ? 152 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.063 ? 170 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 ? 203 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.60 1.64 . . 139 1551 100.00 . . . . 0.2259 . . . . . . . . . . . 0.2600 'X-RAY DIFFRACTION' 1.64 1.68 . . 141 1564 100.00 . . . . 0.2248 . . . . . . . . . . . 0.2492 'X-RAY DIFFRACTION' 1.68 1.73 . . 142 1583 100.00 . . . . 0.2231 . . . . . . . . . . . 0.3012 'X-RAY DIFFRACTION' 1.73 1.79 . . 141 1581 100.00 . . . . 0.2172 . . . . . . . . . . . 0.2487 'X-RAY DIFFRACTION' 1.79 1.85 . . 142 1570 100.00 . . . . 0.2404 . . . . . . . . . . . 0.2878 'X-RAY DIFFRACTION' 1.85 1.93 . . 137 1549 97.00 . . . . 0.3126 . . . . . . . . . . . 0.3209 'X-RAY DIFFRACTION' 1.93 2.02 . . 131 1472 92.00 . . . . 0.2984 . . . . . . . . . . . 0.3293 'X-RAY DIFFRACTION' 2.02 2.12 . . 142 1582 100.00 . . . . 0.2124 . . . . . . . . . . . 0.2511 'X-RAY DIFFRACTION' 2.12 2.25 . . 124 1380 87.00 . . . . 0.2578 . . . . . . . . . . . 0.2637 'X-RAY DIFFRACTION' 2.25 2.43 . . 142 1588 99.00 . . . . 0.2079 . . . . . . . . . . . 0.2760 'X-RAY DIFFRACTION' 2.43 2.67 . . 146 1625 100.00 . . . . 0.2151 . . . . . . . . . . . 0.2605 'X-RAY DIFFRACTION' 2.67 3.06 . . 146 1619 100.00 . . . . 0.2096 . . . . . . . . . . . 0.2993 'X-RAY DIFFRACTION' 3.06 3.85 . . 149 1663 99.00 . . . . 0.1816 . . . . . . . . . . . 0.2006 'X-RAY DIFFRACTION' 3.85 19.62 . . 157 1753 99.00 . . . . 0.1897 . . . . . . . . . . . 0.2168 # _struct.entry_id 8HL9 _struct.title 'Crystal structure of Galectin-8 C-CRD with part of linker' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8HL9 _struct_keywords.text 'Binding sugar, Immunological function, Linker, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 126 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ILE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 130 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 144 _struct_conf.end_auth_comp_id ILE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 148 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 15 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 33 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 16 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 34 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 4 ? PRO A 6 ? ASN A 22 PRO A 24 AA1 2 PHE A 17 ? LEU A 21 ? PHE A 35 LEU A 39 AA1 3 THR A 132 ? GLY A 137 ? THR A 150 GLY A 155 AA1 4 PHE A 44 ? LEU A 49 ? PHE A 62 LEU A 67 AA1 5 ILE A 56 ? ARG A 63 ? ILE A 74 ARG A 81 AA1 6 ALA A 68 ? LEU A 75 ? ALA A 86 LEU A 93 AA1 7 SER A 78 ? TRP A 79 ? SER A 96 TRP A 97 AA2 1 VAL A 115 ? LYS A 121 ? VAL A 133 LYS A 139 AA2 2 GLU A 107 ? VAL A 112 ? GLU A 125 VAL A 130 AA2 3 TYR A 96 ? CYS A 103 ? TYR A 114 CYS A 121 AA2 4 THR A 30 ? VAL A 37 ? THR A 48 VAL A 55 AA2 5 ILE A 139 ? TRP A 147 ? ILE A 157 TRP A 165 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL A 23 O ARG A 20 ? O ARG A 38 AA1 2 3 N PHE A 17 ? N PHE A 35 O ILE A 135 ? O ILE A 153 AA1 3 4 O GLU A 134 ? O GLU A 152 N ASP A 47 ? N ASP A 65 AA1 4 5 N VAL A 46 ? N VAL A 64 O LEU A 60 ? O LEU A 78 AA1 5 6 N ARG A 63 ? N ARG A 81 O ALA A 68 ? O ALA A 86 AA1 6 7 N LEU A 75 ? N LEU A 93 O SER A 78 ? O SER A 96 AA2 1 2 O SER A 117 ? O SER A 135 N VAL A 110 ? N VAL A 128 AA2 2 3 O LYS A 109 ? O LYS A 127 N TYR A 102 ? N TYR A 120 AA2 3 4 O ILE A 101 ? O ILE A 119 N VAL A 31 ? N VAL A 49 AA2 4 5 N GLU A 36 ? N GLU A 54 O HIS A 140 ? O HIS A 158 # _atom_sites.entry_id 8HL9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018904 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018904 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007890 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 19 19 SER SER A . n A 1 2 ARG 2 20 20 ARG ARG A . n A 1 3 GLU 3 21 21 GLU GLU A . n A 1 4 ASN 4 22 22 ASN ASN A . n A 1 5 VAL 5 23 23 VAL VAL A . n A 1 6 PRO 6 24 24 PRO PRO A . n A 1 7 LYS 7 25 25 LYS LYS A . n A 1 8 SER 8 26 ? ? ? A . n A 1 9 GLY 9 27 ? ? ? A . n A 1 10 THR 10 28 ? ? ? A . n A 1 11 PRO 11 29 ? ? ? A . n A 1 12 GLN 12 30 ? ? ? A . n A 1 13 LEU 13 31 ? ? ? A . n A 1 14 ARG 14 32 32 ARG ARG A . n A 1 15 LEU 15 33 33 LEU LEU A . n A 1 16 PRO 16 34 34 PRO PRO A . n A 1 17 PHE 17 35 35 PHE PHE A . n A 1 18 ALA 18 36 36 ALA ALA A . n A 1 19 ALA 19 37 37 ALA ALA A . n A 1 20 ARG 20 38 38 ARG ARG A . n A 1 21 LEU 21 39 39 LEU LEU A . n A 1 22 ASN 22 40 40 ASN ASN A . n A 1 23 THR 23 41 41 THR THR A . n A 1 24 PRO 24 42 42 PRO PRO A . n A 1 25 MET 25 43 43 MET MET A . n A 1 26 GLY 26 44 44 GLY GLY A . n A 1 27 PRO 27 45 45 PRO PRO A . n A 1 28 GLY 28 46 46 GLY GLY A . n A 1 29 ARG 29 47 47 ARG ARG A . n A 1 30 THR 30 48 48 THR THR A . n A 1 31 VAL 31 49 49 VAL VAL A . n A 1 32 VAL 32 50 50 VAL VAL A . n A 1 33 VAL 33 51 51 VAL VAL A . n A 1 34 LYS 34 52 52 LYS LYS A . n A 1 35 GLY 35 53 53 GLY GLY A . n A 1 36 GLU 36 54 54 GLU GLU A . n A 1 37 VAL 37 55 55 VAL VAL A . n A 1 38 ASN 38 56 56 ASN ASN A . n A 1 39 ALA 39 57 57 ALA ALA A . n A 1 40 ASN 40 58 58 ASN ASN A . n A 1 41 ALA 41 59 59 ALA ALA A . n A 1 42 LYS 42 60 60 LYS LYS A . n A 1 43 SER 43 61 61 SER SER A . n A 1 44 PHE 44 62 62 PHE PHE A . n A 1 45 ASN 45 63 63 ASN ASN A . n A 1 46 VAL 46 64 64 VAL VAL A . n A 1 47 ASP 47 65 65 ASP ASP A . n A 1 48 LEU 48 66 66 LEU LEU A . n A 1 49 LEU 49 67 67 LEU LEU A . n A 1 50 ALA 50 68 68 ALA ALA A . n A 1 51 GLY 51 69 69 GLY GLY A . n A 1 52 LYS 52 70 70 LYS LYS A . n A 1 53 SER 53 71 71 SER SER A . n A 1 54 LYS 54 72 72 LYS LYS A . n A 1 55 ASP 55 73 73 ASP ASP A . n A 1 56 ILE 56 74 74 ILE ILE A . n A 1 57 ALA 57 75 75 ALA ALA A . n A 1 58 LEU 58 76 76 LEU LEU A . n A 1 59 HIS 59 77 77 HIS HIS A . n A 1 60 LEU 60 78 78 LEU LEU A . n A 1 61 ASN 61 79 79 ASN ASN A . n A 1 62 PRO 62 80 80 PRO PRO A . n A 1 63 ARG 63 81 81 ARG ARG A . n A 1 64 LEU 64 82 82 LEU LEU A . n A 1 65 ASN 65 83 83 ASN ASN A . n A 1 66 ILE 66 84 84 ILE ILE A . n A 1 67 LYS 67 85 85 LYS LYS A . n A 1 68 ALA 68 86 86 ALA ALA A . n A 1 69 PHE 69 87 87 PHE PHE A . n A 1 70 VAL 70 88 88 VAL VAL A . n A 1 71 ARG 71 89 89 ARG ARG A . n A 1 72 ASN 72 90 90 ASN ASN A . n A 1 73 SER 73 91 91 SER SER A . n A 1 74 PHE 74 92 92 PHE PHE A . n A 1 75 LEU 75 93 93 LEU LEU A . n A 1 76 GLN 76 94 94 GLN GLN A . n A 1 77 GLU 77 95 95 GLU GLU A . n A 1 78 SER 78 96 96 SER SER A . n A 1 79 TRP 79 97 97 TRP TRP A . n A 1 80 GLY 80 98 98 GLY GLY A . n A 1 81 GLU 81 99 99 GLU GLU A . n A 1 82 GLU 82 100 100 GLU GLU A . n A 1 83 GLU 83 101 101 GLU GLU A . n A 1 84 ARG 84 102 102 ARG ARG A . n A 1 85 ASN 85 103 103 ASN ASN A . n A 1 86 ILE 86 104 104 ILE ILE A . n A 1 87 THR 87 105 105 THR THR A . n A 1 88 SER 88 106 106 SER SER A . n A 1 89 PHE 89 107 107 PHE PHE A . n A 1 90 PRO 90 108 108 PRO PRO A . n A 1 91 PHE 91 109 109 PHE PHE A . n A 1 92 SER 92 110 110 SER SER A . n A 1 93 PRO 93 111 111 PRO PRO A . n A 1 94 GLY 94 112 112 GLY GLY A . n A 1 95 MET 95 113 113 MET MET A . n A 1 96 TYR 96 114 114 TYR TYR A . n A 1 97 PHE 97 115 115 PHE PHE A . n A 1 98 GLU 98 116 116 GLU GLU A . n A 1 99 MET 99 117 117 MET MET A . n A 1 100 ILE 100 118 118 ILE ILE A . n A 1 101 ILE 101 119 119 ILE ILE A . n A 1 102 TYR 102 120 120 TYR TYR A . n A 1 103 CYS 103 121 121 CYS CYS A . n A 1 104 ASP 104 122 122 ASP ASP A . n A 1 105 VAL 105 123 123 VAL VAL A . n A 1 106 ARG 106 124 124 ARG ARG A . n A 1 107 GLU 107 125 125 GLU GLU A . n A 1 108 PHE 108 126 126 PHE PHE A . n A 1 109 LYS 109 127 127 LYS LYS A . n A 1 110 VAL 110 128 128 VAL VAL A . n A 1 111 ALA 111 129 129 ALA ALA A . n A 1 112 VAL 112 130 130 VAL VAL A . n A 1 113 ASN 113 131 131 ASN ASN A . n A 1 114 GLY 114 132 132 GLY GLY A . n A 1 115 VAL 115 133 133 VAL VAL A . n A 1 116 HIS 116 134 134 HIS HIS A . n A 1 117 SER 117 135 135 SER SER A . n A 1 118 LEU 118 136 136 LEU LEU A . n A 1 119 GLU 119 137 137 GLU GLU A . n A 1 120 TYR 120 138 138 TYR TYR A . n A 1 121 LYS 121 139 139 LYS LYS A . n A 1 122 HIS 122 140 140 HIS HIS A . n A 1 123 ARG 123 141 141 ARG ARG A . n A 1 124 PHE 124 142 142 PHE PHE A . n A 1 125 LYS 125 143 143 LYS LYS A . n A 1 126 GLU 126 144 144 GLU GLU A . n A 1 127 LEU 127 145 145 LEU LEU A . n A 1 128 SER 128 146 146 SER SER A . n A 1 129 SER 129 147 147 SER SER A . n A 1 130 ILE 130 148 148 ILE ILE A . n A 1 131 ASP 131 149 149 ASP ASP A . n A 1 132 THR 132 150 150 THR THR A . n A 1 133 LEU 133 151 151 LEU LEU A . n A 1 134 GLU 134 152 152 GLU GLU A . n A 1 135 ILE 135 153 153 ILE ILE A . n A 1 136 ASN 136 154 154 ASN ASN A . n A 1 137 GLY 137 155 155 GLY GLY A . n A 1 138 ASP 138 156 156 ASP ASP A . n A 1 139 ILE 139 157 157 ILE ILE A . n A 1 140 HIS 140 158 158 HIS HIS A . n A 1 141 LEU 141 159 159 LEU LEU A . n A 1 142 LEU 142 160 160 LEU LEU A . n A 1 143 GLU 143 161 161 GLU GLU A . n A 1 144 VAL 144 162 162 VAL VAL A . n A 1 145 ARG 145 163 163 ARG ARG A . n A 1 146 SER 146 164 164 SER SER A . n A 1 147 TRP 147 165 165 TRP TRP A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email siyunlong@xzhmu.edu.cn _pdbx_contact_author.name_first Yunlong _pdbx_contact_author.name_last Si _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7943-7229 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 73 HOH HOH A . B 2 HOH 2 202 71 HOH HOH A . B 2 HOH 3 203 4 HOH HOH A . B 2 HOH 4 204 103 HOH HOH A . B 2 HOH 5 205 83 HOH HOH A . B 2 HOH 6 206 23 HOH HOH A . B 2 HOH 7 207 88 HOH HOH A . B 2 HOH 8 208 70 HOH HOH A . B 2 HOH 9 209 75 HOH HOH A . B 2 HOH 10 210 104 HOH HOH A . B 2 HOH 11 211 99 HOH HOH A . B 2 HOH 12 212 94 HOH HOH A . B 2 HOH 13 213 128 HOH HOH A . B 2 HOH 14 214 32 HOH HOH A . B 2 HOH 15 215 8 HOH HOH A . B 2 HOH 16 216 64 HOH HOH A . B 2 HOH 17 217 44 HOH HOH A . B 2 HOH 18 218 7 HOH HOH A . B 2 HOH 19 219 48 HOH HOH A . B 2 HOH 20 220 14 HOH HOH A . B 2 HOH 21 221 36 HOH HOH A . B 2 HOH 22 222 87 HOH HOH A . B 2 HOH 23 223 38 HOH HOH A . B 2 HOH 24 224 10 HOH HOH A . B 2 HOH 25 225 30 HOH HOH A . B 2 HOH 26 226 40 HOH HOH A . B 2 HOH 27 227 101 HOH HOH A . B 2 HOH 28 228 2 HOH HOH A . B 2 HOH 29 229 17 HOH HOH A . B 2 HOH 30 230 37 HOH HOH A . B 2 HOH 31 231 140 HOH HOH A . B 2 HOH 32 232 47 HOH HOH A . B 2 HOH 33 233 33 HOH HOH A . B 2 HOH 34 234 115 HOH HOH A . B 2 HOH 35 235 54 HOH HOH A . B 2 HOH 36 236 11 HOH HOH A . B 2 HOH 37 237 107 HOH HOH A . B 2 HOH 38 238 67 HOH HOH A . B 2 HOH 39 239 16 HOH HOH A . B 2 HOH 40 240 129 HOH HOH A . B 2 HOH 41 241 91 HOH HOH A . B 2 HOH 42 242 81 HOH HOH A . B 2 HOH 43 243 143 HOH HOH A . B 2 HOH 44 244 1 HOH HOH A . B 2 HOH 45 245 13 HOH HOH A . B 2 HOH 46 246 3 HOH HOH A . B 2 HOH 47 247 29 HOH HOH A . B 2 HOH 48 248 26 HOH HOH A . B 2 HOH 49 249 39 HOH HOH A . B 2 HOH 50 250 24 HOH HOH A . B 2 HOH 51 251 82 HOH HOH A . B 2 HOH 52 252 5 HOH HOH A . B 2 HOH 53 253 34 HOH HOH A . B 2 HOH 54 254 15 HOH HOH A . B 2 HOH 55 255 137 HOH HOH A . B 2 HOH 56 256 55 HOH HOH A . B 2 HOH 57 257 31 HOH HOH A . B 2 HOH 58 258 18 HOH HOH A . B 2 HOH 59 259 68 HOH HOH A . B 2 HOH 60 260 27 HOH HOH A . B 2 HOH 61 261 63 HOH HOH A . B 2 HOH 62 262 20 HOH HOH A . B 2 HOH 63 263 121 HOH HOH A . B 2 HOH 64 264 116 HOH HOH A . B 2 HOH 65 265 86 HOH HOH A . B 2 HOH 66 266 46 HOH HOH A . B 2 HOH 67 267 93 HOH HOH A . B 2 HOH 68 268 106 HOH HOH A . B 2 HOH 69 269 92 HOH HOH A . B 2 HOH 70 270 42 HOH HOH A . B 2 HOH 71 271 126 HOH HOH A . B 2 HOH 72 272 28 HOH HOH A . B 2 HOH 73 273 130 HOH HOH A . B 2 HOH 74 274 21 HOH HOH A . B 2 HOH 75 275 58 HOH HOH A . B 2 HOH 76 276 72 HOH HOH A . B 2 HOH 77 277 12 HOH HOH A . B 2 HOH 78 278 108 HOH HOH A . B 2 HOH 79 279 89 HOH HOH A . B 2 HOH 80 280 69 HOH HOH A . B 2 HOH 81 281 43 HOH HOH A . B 2 HOH 82 282 19 HOH HOH A . B 2 HOH 83 283 62 HOH HOH A . B 2 HOH 84 284 25 HOH HOH A . B 2 HOH 85 285 9 HOH HOH A . B 2 HOH 86 286 49 HOH HOH A . B 2 HOH 87 287 22 HOH HOH A . B 2 HOH 88 288 117 HOH HOH A . B 2 HOH 89 289 66 HOH HOH A . B 2 HOH 90 290 6 HOH HOH A . B 2 HOH 91 291 98 HOH HOH A . B 2 HOH 92 292 119 HOH HOH A . B 2 HOH 93 293 133 HOH HOH A . B 2 HOH 94 294 80 HOH HOH A . B 2 HOH 95 295 141 HOH HOH A . B 2 HOH 96 296 50 HOH HOH A . B 2 HOH 97 297 109 HOH HOH A . B 2 HOH 98 298 59 HOH HOH A . B 2 HOH 99 299 97 HOH HOH A . B 2 HOH 100 300 60 HOH HOH A . B 2 HOH 101 301 120 HOH HOH A . B 2 HOH 102 302 95 HOH HOH A . B 2 HOH 103 303 127 HOH HOH A . B 2 HOH 104 304 118 HOH HOH A . B 2 HOH 105 305 65 HOH HOH A . B 2 HOH 106 306 123 HOH HOH A . B 2 HOH 107 307 79 HOH HOH A . B 2 HOH 108 308 96 HOH HOH A . B 2 HOH 109 309 77 HOH HOH A . B 2 HOH 110 310 113 HOH HOH A . B 2 HOH 111 311 74 HOH HOH A . B 2 HOH 112 312 53 HOH HOH A . B 2 HOH 113 313 132 HOH HOH A . B 2 HOH 114 314 105 HOH HOH A . B 2 HOH 115 315 52 HOH HOH A . B 2 HOH 116 316 114 HOH HOH A . B 2 HOH 117 317 51 HOH HOH A . B 2 HOH 118 318 125 HOH HOH A . B 2 HOH 119 319 35 HOH HOH A . B 2 HOH 120 320 110 HOH HOH A . B 2 HOH 121 321 131 HOH HOH A . B 2 HOH 122 322 138 HOH HOH A . B 2 HOH 123 323 102 HOH HOH A . B 2 HOH 124 324 78 HOH HOH A . B 2 HOH 125 325 135 HOH HOH A . B 2 HOH 126 326 100 HOH HOH A . B 2 HOH 127 327 124 HOH HOH A . B 2 HOH 128 328 61 HOH HOH A . B 2 HOH 129 329 136 HOH HOH A . B 2 HOH 130 330 41 HOH HOH A . B 2 HOH 131 331 134 HOH HOH A . B 2 HOH 132 332 56 HOH HOH A . B 2 HOH 133 333 84 HOH HOH A . B 2 HOH 134 334 76 HOH HOH A . B 2 HOH 135 335 111 HOH HOH A . B 2 HOH 136 336 139 HOH HOH A . B 2 HOH 137 337 57 HOH HOH A . B 2 HOH 138 338 85 HOH HOH A . B 2 HOH 139 339 90 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-07-05 2 'Structure model' 1 1 2023-07-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_volume' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? v1.0 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? ARP/wARP ? ? ? . 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 334 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 338 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_465 _pdbx_validate_symm_contact.dist 2.09 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 70 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -62.94 _pdbx_validate_torsion.psi -72.32 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 339 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.50 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 26 ? A SER 8 2 1 Y 1 A GLY 27 ? A GLY 9 3 1 Y 1 A THR 28 ? A THR 10 4 1 Y 1 A PRO 29 ? A PRO 11 5 1 Y 1 A GLN 30 ? A GLN 12 6 1 Y 1 A LEU 31 ? A LEU 13 # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 82201916 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #