HEADER TOXIN 30-NOV-22 8HLK TITLE STRUCTURE OF MCYB-C1A1 COMPLEXED WITH L-LEU AND AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROCYSTIN SYNTHETASE B (FRAGMENT); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROCYSTIS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 1126; SOURCE 4 GENE: MCYB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NRPSS, MICROCYSTIN SYNTHASE, CONDENSATION DOMAIN, ADENYLATION DOAMIN, KEYWDS 2 TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.PENG REVDAT 1 13-DEC-23 8HLK 0 JRNL AUTH Y.J.PENG JRNL TITL STRUCTURE OF MCYB-C1A1 COMPLEXED WITH L-LEU AND AMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 47370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2540 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3345 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.388 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.107 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7502 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 7177 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10214 ; 1.701 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16531 ; 0.572 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 904 ; 8.371 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ; 9.375 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1288 ;17.922 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1161 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8760 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1689 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3637 ; 7.843 ; 6.601 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3637 ; 7.843 ; 6.601 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4534 ;12.069 ;11.835 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4535 ;12.067 ;11.834 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3865 ; 8.248 ; 7.376 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3865 ; 8.247 ; 7.376 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5681 ;12.755 ;13.241 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8551 ;17.665 ;66.610 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8552 ;17.664 ;66.620 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8HLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300032471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49972 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 13.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.27400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.24600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.49200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.49200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.24600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 76660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -45.24600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 ASN A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 76 REMARK 465 LYS A 77 REMARK 465 ARG A 78 REMARK 465 GLU A 79 REMARK 465 LYS A 80 REMARK 465 PRO A 81 REMARK 465 LEU A 82 REMARK 465 GLN A 83 REMARK 465 LEU A 101 REMARK 465 SER A 102 REMARK 465 PRO A 103 REMARK 465 THR A 104 REMARK 465 GLU A 105 REMARK 465 GLN A 106 REMARK 465 GLN A 107 REMARK 465 GLN A 108 REMARK 465 ARG A 109 REMARK 465 LEU A 110 REMARK 465 ASP A 111 REMARK 465 LEU A 225 REMARK 465 MET A 226 REMARK 465 LYS A 227 REMARK 465 SER A 228 REMARK 465 GLU A 229 REMARK 465 GLY A 230 REMARK 465 LYS A 231 REMARK 465 PRO A 368 REMARK 465 ARG A 369 REMARK 465 GLU A 370 REMARK 465 ALA A 371 REMARK 465 LEU A 372 REMARK 465 SER A 373 REMARK 465 ARG A 374 REMARK 465 ASP A 375 REMARK 465 SER A 376 REMARK 465 ARG A 377 REMARK 465 GLN A 378 REMARK 465 GLY A 625 REMARK 465 SER A 626 REMARK 465 THR A 627 REMARK 465 GLU A 964 REMARK 465 THR A 965 REMARK 465 SER A 966 REMARK 465 ILE A 967 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 379 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 120 OE2 GLU A 123 1.65 REMARK 500 O ASP A 221 O HOH A 1301 2.01 REMARK 500 NE2 GLN A 96 O TRP A 98 2.08 REMARK 500 CB ASN A 836 O GLY A 841 2.13 REMARK 500 O HIS A 28 OG1 THR A 32 2.17 REMARK 500 O VAL A 883 OG1 THR A 886 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 173 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 TYR A 186 CB - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG A 219 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 LYS A 953 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 125.26 -36.91 REMARK 500 SER A 35 -63.98 -124.48 REMARK 500 ASP A 90 60.97 84.57 REMARK 500 LEU A 91 -60.71 -160.19 REMARK 500 TRP A 93 -145.35 -151.53 REMARK 500 GLN A 115 -60.63 -99.07 REMARK 500 ARG A 118 -52.49 -132.66 REMARK 500 LYS A 125 117.16 -171.02 REMARK 500 PRO A 128 46.15 -72.05 REMARK 500 ARG A 131 112.52 -37.91 REMARK 500 CYS A 132 129.42 -39.26 REMARK 500 TYR A 142 63.09 89.96 REMARK 500 ARG A 219 26.22 39.80 REMARK 500 ASN A 257 31.99 75.58 REMARK 500 PRO A 291 -135.88 -104.94 REMARK 500 VAL A 297 -64.00 -130.44 REMARK 500 ALA A 338 49.65 -92.01 REMARK 500 ASN A 387 50.30 -104.77 REMARK 500 GLU A 390 -38.33 -39.36 REMARK 500 ASN A 485 64.44 -150.77 REMARK 500 GLU A 494 -124.20 46.62 REMARK 500 THR A 575 -158.04 -146.25 REMARK 500 ASP A 594 -61.80 -95.26 REMARK 500 GLU A 761 2.17 -66.55 REMARK 500 ASN A 762 52.57 -140.27 REMARK 500 VAL A 764 -68.51 67.09 REMARK 500 GLU A 775 -75.02 -102.64 REMARK 500 GLU A 776 -59.52 -179.83 REMARK 500 SER A 783 152.63 -49.87 REMARK 500 LEU A 861 -62.74 -108.46 REMARK 500 ARG A 874 -17.63 77.35 REMARK 500 GLU A 889 -16.91 94.49 REMARK 500 LEU A 897 -72.50 -79.08 REMARK 500 THR A 901 -158.18 -90.05 REMARK 500 PRO A 916 2.09 -63.31 REMARK 500 GLN A 930 -60.88 -90.86 REMARK 500 TYR A 934 -6.18 71.35 REMARK 500 ASP A 945 153.03 178.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 121 PHE A 122 -149.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 56 0.14 SIDE CHAIN REMARK 500 ARG A 86 0.14 SIDE CHAIN REMARK 500 ARG A 131 0.28 SIDE CHAIN REMARK 500 ARG A 423 0.08 SIDE CHAIN REMARK 500 ARG A 531 0.08 SIDE CHAIN REMARK 500 ARG A 825 0.09 SIDE CHAIN REMARK 500 ARG A 906 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8HLK A 1 967 PDB 8HLK 8HLK 1 967 SEQRES 1 A 967 MET ALA ASP THR LYS ASN GLN PRO ALA LYS ASN VAL GLU SEQRES 2 A 967 SER ILE TYR PRO LEU SER PRO MET GLN GLU GLY MET LEU SEQRES 3 A 967 PHE HIS SER LEU TYR THR PRO ASP SER GLY ILE TYR CYS SEQRES 4 A 967 SER GLN THR LEU ILE THR LEU GLU GLY GLU ILE ASN LEU SEQRES 5 A 967 THR VAL PHE ARG GLN ALA TRP GLU LYS VAL VAL GLU ARG SEQRES 6 A 967 HIS SER VAL LEU ARG THR LEU PHE LEU TRP GLU LYS ARG SEQRES 7 A 967 GLU LYS PRO LEU GLN ILE VAL ARG LYS LYS VAL ASP LEU SEQRES 8 A 967 PRO TRP ASP TYR GLN ASP TRP ARG ASN LEU SER PRO THR SEQRES 9 A 967 GLU GLN GLN GLN ARG LEU ASP LEU LEU LEU GLN THR GLU SEQRES 10 A 967 ARG GLN GLN GLY PHE GLU PHE LYS VAL ALA PRO LEU MET SEQRES 11 A 967 ARG CYS LEU MET ILE GLN LEU SER ASP GLN THR TYR LYS SEQRES 12 A 967 PHE LEU CYS ASN HIS HIS HIS ILE ILE LEU ASP GLY TRP SEQRES 13 A 967 SER MET PRO ILE ILE TYR GLN GLU VAL LEU GLY PHE TYR SEQRES 14 A 967 GLU ALA GLY ILE GLN GLY LYS SER HIS HIS LEU PRO SER SEQRES 15 A 967 PRO ARG PRO TYR GLN ASP TYR ILE VAL TRP LEU GLN GLU SEQRES 16 A 967 GLN ASN PRO SER VAL ALA GLU SER TYR TRP GLN ARG THR SEQRES 17 A 967 LEU GLU GLY PHE MET THR PRO THR PRO LEU ARG VAL ASP SEQRES 18 A 967 ARG LEU GLN LEU MET LYS SER GLU GLY LYS PRO THR TYR SEQRES 19 A 967 LYS GLU TYR ASN CYS HIS LEU SER ALA SER LEU SER LYS SEQRES 20 A 967 ASP LEU GLN SER LEU ALA GLN LYS HIS ASN LEU THR LEU SEQRES 21 A 967 SER THR LEU VAL GLN ALA ALA TRP ALA ILE LEU LEU SER SEQRES 22 A 967 ARG TYR SER GLY GLU SER GLU VAL LEU PHE GLY VAL THR SEQRES 23 A 967 VAL SER GLY ARG PRO HIS ASP LEU SER GLY VAL GLU ARG SEQRES 24 A 967 ARG VAL GLY LEU PHE ILE ASN THR LEU PRO LEU ARG VAL SEQRES 25 A 967 SER ILE ARG GLU SER ASP LEU LEU LEU SER TRP LEU GLN SEQRES 26 A 967 GLU LEU GLN GLN LYS GLN ALA GLU ILE GLN ASP TYR ALA SEQRES 27 A 967 TYR VAL SER LEU ALA GLU ILE GLN ARG LEU SER ASP ILE SEQRES 28 A 967 PRO PRO GLY VAL PRO LEU PHE GLU SER LEU VAL VAL PHE SEQRES 29 A 967 GLU ASN TYR PRO ARG GLU ALA LEU SER ARG ASP SER ARG SEQRES 30 A 967 GLN SER LEU ARG VAL LYS ASP VAL GLU ASN PHE GLU GLU SEQRES 31 A 967 THR ASN TYR PRO LEU THR VAL VAL ALA ILE PRO ARG GLN SEQRES 32 A 967 GLU LEU LEU ILE GLN LEU ILE TYR ASP THR SER ARG PHE SEQRES 33 A 967 THR GLN ASP THR ILE GLU ARG MET ALA GLY HIS LEU GLN SEQRES 34 A 967 THR ILE LEU THR GLY ILE VAL THR ASP PRO ARG GLN ARG SEQRES 35 A 967 VAL THR GLN LEU PRO ILE LEU THR THR GLN GLU GLN HIS SEQRES 36 A 967 GLN LEU LEU VAL GLU TRP ASN ASN THR GLU ALA ASP TYR SEQRES 37 A 967 PRO LEU ASP LYS SER LEU HIS GLN LEU PHE GLU GLU GLN SEQRES 38 A 967 ALA ALA GLN ASN PRO GLN GLY ILE ALA VAL ILE PHE GLU SEQRES 39 A 967 ASP GLN LYS LEU THR TYR GLN GLN LEU ASN ASN ARG GLY SEQRES 40 A 967 ASN GLN LEU ALA HIS CYS LEU ARG ASP LYS GLY VAL GLY SEQRES 41 A 967 PRO GLU SER LEU VAL GLY ILE PHE MET GLU ARG SER LEU SEQRES 42 A 967 GLU MET VAL ILE GLY LEU LEU GLY ILE LEU LYS ALA GLY SEQRES 43 A 967 GLY ALA TYR VAL PRO LEU ASP PRO ASP TYR PRO THR GLU SEQRES 44 A 967 ARG LEU GLY ASP ILE LEU SER ASP SER GLY VAL SER LEU SEQRES 45 A 967 VAL LEU THR GLN GLU SER LEU GLY ASP PHE LEU PRO GLN SEQRES 46 A 967 THR GLY ALA GLU SER LEU CYS LEU ASP ARG ASP TRP GLU SEQRES 47 A 967 LYS ILE ALA THR TYR SER PRO GLU ASN HIS PHE ASN LEU SEQRES 48 A 967 THR THR PRO GLU ASN LEU ALA TYR VAL ILE TYR THR SER SEQRES 49 A 967 GLY SER THR GLY LYS PRO LYS GLY VAL LEU ILE SER HIS SEQRES 50 A 967 ARG GLY LEU MET ASN LEU ILE CYS TRP HIS GLN ASP ALA SEQRES 51 A 967 PHE GLU ILE THR PRO LEU ASP LYS ILE THR GLN LEU ALA SEQRES 52 A 967 ARG ILE ALA PHE ASP ALA ALA VAL TRP GLU LEU TRP PRO SEQRES 53 A 967 CYS LEU THR ALA GLY ALA SER LEU VAL LEU VAL LYS PRO SEQRES 54 A 967 GLU ILE MET GLN SER PRO PRO ASP LEU ARG ASP TRP LEU SEQRES 55 A 967 ILE ALA GLN GLU ILE THR VAL SER PHE LEU PRO THR PRO SEQRES 56 A 967 LEU VAL GLU LYS ILE LEU SER LEU GLU TRP ASP GLU ASN SEQRES 57 A 967 ILE ALA LEU ARG ILE ILE LEU THR GLY GLY ASP LYS LEU SEQRES 58 A 967 HIS HIS TYR PRO SER GLY LEU MET PRO PHE LYS LEU ILE SEQRES 59 A 967 ASN ASN TYR GLY PRO THR GLU ASN SER VAL VAL THR THR SEQRES 60 A 967 SER GLY LEU VAL ARG ASP TYR GLU GLU GLY ASN PRO PRO SEQRES 61 A 967 SER PRO SER ILE GLY LYS PRO VAL TYR ASN THR LYS ILE SEQRES 62 A 967 TYR ILE LEU ASP GLN ASN LEU GLN PRO LEU PRO ILE GLY SEQRES 63 A 967 VAL PRO GLY GLU LEU HIS ILE SER SER VAL GLY LEU ALA SEQRES 64 A 967 ARG GLY TYR LEU ASN ARG LEU GLU LEU THR GLN GLU LYS SEQRES 65 A 967 PHE ILE SER ASN PRO PHE ASN SER GLY ILE LEU TYR LYS SEQRES 66 A 967 THR GLY ASP LEU VAL ARG TYR LEU PRO GLU GLY ASN ILE SEQRES 67 A 967 GLU PHE LEU GLY ARG ILE ASP ASN GLN VAL LYS LEU ARG SEQRES 68 A 967 GLY LEU ARG ILE GLU LEU GLY GLU ILE GLU ALA VAL LEU SEQRES 69 A 967 GLU THR HIS SER GLU VAL GLU LYS ALA VAL VAL ILE LEU SEQRES 70 A 967 ARG GLU ASP THR SER ASP ASN GLN ARG LEU VAL ALA TYR SEQRES 71 A 967 ILE VAL ARG LYS SER PRO SER LEU GLY ILE GLY GLU LEU SEQRES 72 A 967 ARG ARG PHE LEU GLN GLN GLN LEU PRO ALA TYR MET VAL SEQRES 73 A 967 PRO SER ALA PHE VAL ILE LEU SER ASP PHE PRO LEU ASN SEQRES 74 A 967 ASN ASN GLY LYS ILE ASP ARG LYS LYS LEU PRO VAL PRO SEQRES 75 A 967 ASP GLU THR SER ILE HET LEU A1201 9 HET AMP A1202 23 HETNAM LEU LEUCINE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 LEU C6 H13 N O2 FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 HOH *203(H2 O) HELIX 1 AA1 SER A 19 THR A 32 1 14 HELIX 2 AA2 ASN A 51 HIS A 66 1 16 HELIX 3 AA3 SER A 67 LEU A 69 5 3 HELIX 4 AA4 TRP A 156 ALA A 171 1 16 HELIX 5 AA5 GLN A 187 GLN A 196 1 10 HELIX 6 AA6 ASN A 197 LEU A 209 1 13 HELIX 7 AA7 SER A 242 ASN A 257 1 16 HELIX 8 AA8 THR A 259 GLY A 277 1 19 HELIX 9 AA9 LEU A 319 TYR A 337 1 19 HELIX 10 AB1 SER A 341 SER A 349 1 9 HELIX 11 AB2 THR A 417 ASP A 438 1 22 HELIX 12 AB3 ARG A 442 LEU A 446 5 5 HELIX 13 AB4 THR A 450 VAL A 459 1 10 HELIX 14 AB5 SER A 473 ASN A 485 1 13 HELIX 15 AB6 TYR A 500 LYS A 517 1 18 HELIX 16 AB7 SER A 532 GLY A 546 1 15 HELIX 17 AB8 PRO A 557 GLY A 569 1 13 HELIX 18 AB9 GLN A 576 ASP A 581 1 6 HELIX 19 AC1 ASP A 596 THR A 602 1 7 HELIX 20 AC2 HIS A 637 PHE A 651 1 15 HELIX 21 AC3 PHE A 667 ALA A 669 5 3 HELIX 22 AC4 ALA A 670 THR A 679 1 10 HELIX 23 AC5 LYS A 688 GLN A 693 1 6 HELIX 24 AC6 SER A 694 GLN A 705 1 12 HELIX 25 AC7 PRO A 713 LEU A 721 1 9 HELIX 26 AC8 PRO A 759 SER A 763 5 5 HELIX 27 AC9 ARG A 825 LYS A 832 1 8 HELIX 28 AD1 ASP A 865 GLN A 867 5 3 HELIX 29 AD2 GLU A 876 HIS A 887 1 12 HELIX 30 AD3 GLY A 919 LEU A 931 1 13 HELIX 31 AD4 ASP A 955 LEU A 959 5 5 SHEET 1 AA1 4 MET A 134 LEU A 137 0 SHEET 2 AA1 4 LYS A 143 HIS A 149 -1 O LEU A 145 N LEU A 137 SHEET 3 AA1 4 CYS A 39 LEU A 46 -1 N ILE A 44 O PHE A 144 SHEET 4 AA1 4 ARG A 381 GLU A 386 -1 O VAL A 382 N THR A 45 SHEET 1 AA2 2 THR A 71 LEU A 74 0 SHEET 2 AA2 2 VAL A 85 LYS A 88 -1 O VAL A 85 N LEU A 74 SHEET 1 AA3 6 TYR A 234 HIS A 240 0 SHEET 2 AA3 6 LEU A 405 ASP A 412 -1 O LEU A 409 N TYR A 237 SHEET 3 AA3 6 LEU A 395 PRO A 401 -1 N THR A 396 O ILE A 410 SHEET 4 AA3 6 SER A 360 PHE A 364 1 N LEU A 361 O VAL A 397 SHEET 5 AA3 6 GLU A 280 THR A 286 1 N GLY A 284 O SER A 360 SHEET 6 AA3 6 THR A 307 SER A 313 -1 O LEU A 310 N PHE A 283 SHEET 1 AA4 4 GLN A 496 THR A 499 0 SHEET 2 AA4 4 ILE A 489 PHE A 493 -1 N ALA A 490 O LEU A 498 SHEET 3 AA4 4 SER A 683 LEU A 686 1 O LEU A 684 N ALA A 490 SHEET 4 AA4 4 LYS A 658 GLN A 661 1 N ILE A 659 O SER A 683 SHEET 1 AA5 4 ALA A 548 PRO A 551 0 SHEET 2 AA5 4 LEU A 524 ILE A 527 1 N VAL A 525 O ALA A 548 SHEET 3 AA5 4 LEU A 572 THR A 575 1 O LEU A 572 N GLY A 526 SHEET 4 AA5 4 GLU A 589 CYS A 592 1 O LEU A 591 N THR A 575 SHEET 1 AA6 3 LEU A 617 THR A 623 0 SHEET 2 AA6 3 LYS A 631 SER A 636 -1 O ILE A 635 N ALA A 618 SHEET 3 AA6 3 GLY A 821 TYR A 822 -1 O GLY A 821 N LEU A 634 SHEET 1 AA7 5 VAL A 709 PHE A 711 0 SHEET 2 AA7 5 ILE A 733 GLY A 737 1 O LEU A 735 N SER A 710 SHEET 3 AA7 5 LYS A 752 TYR A 757 1 O ILE A 754 N ILE A 734 SHEET 4 AA7 5 THR A 767 VAL A 771 -1 O VAL A 771 N LEU A 753 SHEET 5 AA7 5 LYS A 786 PRO A 787 -1 O LYS A 786 N SER A 768 SHEET 1 AA8 4 THR A 791 LEU A 796 0 SHEET 2 AA8 4 GLY A 809 SER A 815 -1 O SER A 814 N LYS A 792 SHEET 3 AA8 4 ILE A 842 TYR A 852 -1 O VAL A 850 N GLY A 809 SHEET 4 AA8 4 PHE A 833 SER A 835 -1 N ILE A 834 O LEU A 843 SHEET 1 AA9 4 THR A 791 LEU A 796 0 SHEET 2 AA9 4 GLY A 809 SER A 815 -1 O SER A 814 N LYS A 792 SHEET 3 AA9 4 ILE A 842 TYR A 852 -1 O VAL A 850 N GLY A 809 SHEET 4 AA9 4 ILE A 858 ARG A 863 -1 O GLY A 862 N LEU A 849 SHEET 1 AB1 3 VAL A 890 ILE A 896 0 SHEET 2 AB1 3 VAL A 908 ARG A 913 -1 O TYR A 910 N VAL A 894 SHEET 3 AB1 3 ALA A 939 LEU A 943 1 O LEU A 943 N ILE A 911 CRYST1 152.534 152.534 135.738 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006556 0.003785 0.000000 0.00000 SCALE2 0.000000 0.007570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007367 0.00000