HEADER ANTIMICROBIAL PROTEIN 08-DEC-22 8HNV TITLE CRYOEM STRUCTURE OF HPACAS9-SGRNA-DSDNA IN THE PRESENCE OF ACRIIC4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: TWO MUTATIONS D13A AND H581A WERE INTRODUCED TO COMPND 7 INACTIVATE THE CATALYTIC SITES OF HPACAS9. THE FIRST RESIDUE 'SER' OF COMPND 8 THE SAMPLE SEQUENCE IS THE ONE EXPRESSED FROM THE VECTOR LEFT AFTER COMPND 9 TAG CLEAVAGE.; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SGRNA; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: RNA IS ORIGINALLY DERIVED FROM HAEMOPHILUS COMPND 15 PARAINFLUENZAE AND MODIFIED BY AUTHOR.; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: TARGET STRAND; COMPND 18 CHAIN: C; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: NON-TARGET STRAND; COMPND 22 CHAIN: D; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 5; COMPND 25 MOLECULE: ANTI-CRISPR PROTEIN ACRIIC4; COMPND 26 CHAIN: E; COMPND 27 ENGINEERED: YES; COMPND 28 OTHER_DETAILS: WP_049372635.1;THE FIRST RESIDUE 'SER' OF THE SAMPLE COMPND 29 SEQUENCE IS THE ONE EXPRESSED FROM THE VECTOR LEFT AFTER TAG COMPND 30 CLEAVAGE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAINFLUENZAE; SOURCE 3 ORGANISM_TAXID: 729; SOURCE 4 GENE: CSN1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAINFLUENZAE; SOURCE 14 ORGANISM_TAXID: 729; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAINFLUENZAE; SOURCE 18 ORGANISM_TAXID: 729; SOURCE 19 MOL_ID: 5; SOURCE 20 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAINFLUENZAE; SOURCE 21 ORGANISM_TAXID: 729; SOURCE 22 GENE: ACRIIC4; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CAS9, CLEAVAGE INHIBITION, ANTIMICROBIAL PROTEIN, HYDROLASE-RNA- KEYWDS 2 ANTIMICROBIAL PROTEIN COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR W.SUN,Z.CHENG,J.WANG,X.YANG,Y.WANG REVDAT 3 03-JUL-24 8HNV 1 REMARK REVDAT 2 02-AUG-23 8HNV 1 JRNL REVDAT 1 19-JUL-23 8HNV 0 JRNL AUTH W.SUN,Z.CHENG,J.WANG,J.YANG,X.LI,J.WANG,M.CHEN,X.YANG, JRNL AUTH 2 G.SHENG,J.LOU,Y.WANG JRNL TITL ACRIIC4 INHIBITS TYPE II-C CAS9 BY PREVENTING R-LOOP JRNL TITL 2 FORMATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 75120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 37494395 JRNL DOI 10.1073/PNAS.2303675120 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.LEE,A.MIR,A.EDRAKI,B.GARCIA,N.AMRANI,H.E.LOU, REMARK 1 AUTH 2 I.GAINETDINOV,A.PAWLUK,R.IBRAHEIM,X.D.GAO,P.LIU, REMARK 1 AUTH 3 A.R.DAVIDSON,K.L.MAXWELL,E.J.SONTHEIMER REMARK 1 TITL POTENT CAS9 INHIBITION IN BACTERIAL AND HUMAN CELLS BY REMARK 1 TITL 2 ACRIIC4 AND ACRIIC5 ANTI-CRISPR PROTEINS. REMARK 1 REF MBIO V. 9 2018 REMARK 1 REFN ESSN 2150-7511 REMARK 1 PMID 30514786 REMARK 1 DOI 10.1186/1758-907X-3-9 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 212049 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8HNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300034014. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF HPACAS9-SGRNA-DNA IN REMARK 245 THE PRESENCE OF ACRIIC4; REMARK 245 HPACAS9/ACRIIC4; RNA/DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 SER A 91 REMARK 465 THR A 92 REMARK 465 ASP A 93 REMARK 465 GLU A 94 REMARK 465 LEU A 131 REMARK 465 SER A 132 REMARK 465 GLN A 133 REMARK 465 ARG A 134 REMARK 465 LYS A 135 REMARK 465 ASN A 136 REMARK 465 GLU A 137 REMARK 465 SER A 138 REMARK 465 LYS A 139 REMARK 465 SER A 140 REMARK 465 GLU A 141 REMARK 465 ASN A 142 REMARK 465 LYS A 143 REMARK 465 GLU A 144 REMARK 465 LEU A 145 REMARK 465 GLY A 146 REMARK 465 LEU A 272 REMARK 465 ASN A 273 REMARK 465 ASN A 274 REMARK 465 LEU A 275 REMARK 465 ARG A 276 REMARK 465 ILE A 277 REMARK 465 GLN A 278 REMARK 465 GLU A 279 REMARK 465 ASN A 280 REMARK 465 GLY A 281 REMARK 465 LEU A 282 REMARK 465 GLU A 283 REMARK 465 ARG A 284 REMARK 465 ALA A 285 REMARK 465 LEU A 286 REMARK 465 ASN A 287 REMARK 465 ASP A 288 REMARK 465 ASN A 289 REMARK 465 GLU A 290 REMARK 465 ARG A 310 REMARK 465 SER A 311 REMARK 465 ILE A 312 REMARK 465 LEU A 313 REMARK 465 LYS A 314 REMARK 465 LEU A 315 REMARK 465 SER A 316 REMARK 465 ASP A 317 REMARK 465 GLU A 318 REMARK 465 ALA A 319 REMARK 465 ILE A 320 REMARK 465 PHE A 321 REMARK 465 LYS A 322 REMARK 465 GLY A 323 REMARK 465 LEU A 324 REMARK 465 ARG A 325 REMARK 465 TYR A 326 REMARK 465 SER A 327 REMARK 465 GLY A 328 REMARK 465 GLU A 329 REMARK 465 ASP A 330 REMARK 465 LYS A 331 REMARK 465 LYS A 332 REMARK 465 ALA A 333 REMARK 465 ILE A 334 REMARK 465 GLU A 335 REMARK 465 THR A 336 REMARK 465 LYS A 337 REMARK 465 ALA A 338 REMARK 465 VAL A 339 REMARK 465 LEU A 340 REMARK 465 GLY A 431 REMARK 465 LEU A 432 REMARK 465 ARG A 433 REMARK 465 TYR A 434 REMARK 465 GLY A 443 REMARK 465 ASP A 444 REMARK 465 HIS A 445 REMARK 465 TYR A 446 REMARK 465 GLY A 447 REMARK 465 LYS A 448 REMARK 465 LYS A 449 REMARK 465 THR A 450 REMARK 465 GLU A 451 REMARK 465 GLU A 452 REMARK 465 ARG A 500 REMARK 465 GLU A 501 REMARK 465 VAL A 502 REMARK 465 GLY A 503 REMARK 465 LYS A 504 REMARK 465 SER A 505 REMARK 465 TYR A 506 REMARK 465 LYS A 507 REMARK 465 ASP A 508 REMARK 465 ARG A 509 REMARK 465 ARG A 510 REMARK 465 GLU A 511 REMARK 465 LEU A 512 REMARK 465 GLU A 513 REMARK 465 LYS A 514 REMARK 465 ARG A 515 REMARK 465 GLN A 516 REMARK 465 GLU A 517 REMARK 465 GLU A 518 REMARK 465 ASN A 519 REMARK 465 ARG A 520 REMARK 465 LYS A 521 REMARK 465 GLN A 522 REMARK 465 ARG A 523 REMARK 465 GLU A 524 REMARK 465 ASN A 525 REMARK 465 ALA A 526 REMARK 465 ILE A 527 REMARK 465 LYS A 528 REMARK 465 GLU A 529 REMARK 465 PHE A 530 REMARK 465 LYS A 531 REMARK 465 GLU A 532 REMARK 465 TYR A 533 REMARK 465 PHE A 534 REMARK 465 PRO A 535 REMARK 465 HIS A 536 REMARK 465 PHE A 537 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 GLU A 540 REMARK 465 PRO A 541 REMARK 465 LYS A 542 REMARK 465 ALA A 543 REMARK 465 LYS A 544 REMARK 465 ASP A 545 REMARK 465 ILE A 546 REMARK 465 LEU A 547 REMARK 465 LYS A 548 REMARK 465 MET A 549 REMARK 465 ARG A 550 REMARK 465 LEU A 551 REMARK 465 TYR A 552 REMARK 465 LYS A 553 REMARK 465 GLN A 554 REMARK 465 GLN A 555 REMARK 465 ASN A 556 REMARK 465 ALA A 557 REMARK 465 LYS A 558 REMARK 465 CYS A 559 REMARK 465 LEU A 560 REMARK 465 TYR A 561 REMARK 465 SER A 562 REMARK 465 GLY A 563 REMARK 465 LYS A 564 REMARK 465 PRO A 565 REMARK 465 ILE A 566 REMARK 465 GLU A 567 REMARK 465 LEU A 568 REMARK 465 HIS A 569 REMARK 465 ARG A 570 REMARK 465 LEU A 571 REMARK 465 LEU A 572 REMARK 465 GLU A 573 REMARK 465 LYS A 574 REMARK 465 GLY A 575 REMARK 465 TYR A 576 REMARK 465 VAL A 577 REMARK 465 GLU A 578 REMARK 465 VAL A 579 REMARK 465 ASP A 580 REMARK 465 ALA A 581 REMARK 465 ALA A 582 REMARK 465 LEU A 583 REMARK 465 PRO A 584 REMARK 465 PHE A 585 REMARK 465 SER A 586 REMARK 465 ARG A 587 REMARK 465 THR A 588 REMARK 465 TRP A 589 REMARK 465 ASP A 590 REMARK 465 ASP A 591 REMARK 465 SER A 592 REMARK 465 PHE A 593 REMARK 465 ASN A 594 REMARK 465 ASN A 595 REMARK 465 LYS A 596 REMARK 465 VAL A 597 REMARK 465 LEU A 598 REMARK 465 VAL A 599 REMARK 465 LEU A 600 REMARK 465 ALA A 601 REMARK 465 ASN A 602 REMARK 465 GLU A 603 REMARK 465 ASN A 604 REMARK 465 GLN A 605 REMARK 465 ASN A 606 REMARK 465 LYS A 607 REMARK 465 GLY A 608 REMARK 465 ASN A 609 REMARK 465 LEU A 610 REMARK 465 THR A 611 REMARK 465 PRO A 612 REMARK 465 PHE A 613 REMARK 465 GLU A 614 REMARK 465 TRP A 615 REMARK 465 LEU A 616 REMARK 465 ASP A 617 REMARK 465 GLY A 618 REMARK 465 LYS A 619 REMARK 465 HIS A 620 REMARK 465 ASN A 621 REMARK 465 SER A 622 REMARK 465 GLU A 623 REMARK 465 ARG A 624 REMARK 465 TRP A 625 REMARK 465 ARG A 626 REMARK 465 ALA A 627 REMARK 465 PHE A 628 REMARK 465 LYS A 629 REMARK 465 ALA A 630 REMARK 465 LEU A 631 REMARK 465 VAL A 632 REMARK 465 GLU A 633 REMARK 465 THR A 634 REMARK 465 SER A 635 REMARK 465 ALA A 636 REMARK 465 PHE A 637 REMARK 465 PRO A 638 REMARK 465 TYR A 639 REMARK 465 ALA A 640 REMARK 465 LYS A 641 REMARK 465 LYS A 642 REMARK 465 GLN A 643 REMARK 465 ARG A 644 REMARK 465 ILE A 645 REMARK 465 LEU A 646 REMARK 465 SER A 647 REMARK 465 GLN A 648 REMARK 465 LYS A 649 REMARK 465 LEU A 650 REMARK 465 ASP A 651 REMARK 465 GLU A 652 REMARK 465 LYS A 653 REMARK 465 GLY A 654 REMARK 465 PHE A 655 REMARK 465 ILE A 656 REMARK 465 GLU A 657 REMARK 465 ARG A 658 REMARK 465 ASN A 659 REMARK 465 LEU A 660 REMARK 465 ASN A 661 REMARK 465 ASP A 662 REMARK 465 THR A 663 REMARK 465 ARG A 664 REMARK 465 THR A 727 REMARK 465 VAL A 728 REMARK 465 ALA A 729 REMARK 465 MET A 730 REMARK 465 GLN A 731 REMARK 465 GLN A 732 REMARK 465 LYS A 733 REMARK 465 ILE A 734 REMARK 465 THR A 735 REMARK 465 ARG A 736 REMARK 465 PHE A 737 REMARK 465 VAL A 738 REMARK 465 ARG A 739 REMARK 465 PHE A 740 REMARK 465 GLU A 741 REMARK 465 ALA A 742 REMARK 465 GLY A 743 REMARK 465 ASP A 744 REMARK 465 VAL A 745 REMARK 465 PHE A 746 REMARK 465 THR A 747 REMARK 465 GLY A 748 REMARK 465 GLU A 749 REMARK 465 ARG A 750 REMARK 465 ILE A 751 REMARK 465 ASP A 752 REMARK 465 ARG A 753 REMARK 465 GLU A 754 REMARK 465 THR A 755 REMARK 465 GLY A 756 REMARK 465 GLU A 757 REMARK 465 ILE A 758 REMARK 465 ILE A 759 REMARK 465 PRO A 760 REMARK 465 LEU A 761 REMARK 465 HIS A 762 REMARK 465 PHE A 763 REMARK 465 PRO A 764 REMARK 465 THR A 765 REMARK 465 PRO A 766 REMARK 465 TRP A 767 REMARK 465 GLN A 768 REMARK 465 PHE A 769 REMARK 465 GLU A 788 REMARK 465 ASN A 789 REMARK 465 ARG A 790 REMARK 465 LEU A 791 REMARK 465 PRO A 792 REMARK 465 ASP A 793 REMARK 465 ARG A 794 REMARK 465 PRO A 795 REMARK 465 GLN A 796 REMARK 465 ALA A 797 REMARK 465 ASN A 798 REMARK 465 HIS A 799 REMARK 465 GLU A 800 REMARK 465 PHE A 801 REMARK 465 G B 1 REMARK 465 G B 2 REMARK 465 U B 3 REMARK 465 C B 4 REMARK 465 A B 5 REMARK 465 C B 6 REMARK 465 U B 7 REMARK 465 C B 8 REMARK 465 U B 9 REMARK 465 A B 10 REMARK 465 A B 11 REMARK 465 C B 12 REMARK 465 A B 13 REMARK 465 U B 14 REMARK 465 U B 15 REMARK 465 U B 16 REMARK 465 A B 17 REMARK 465 A B 44 REMARK 465 A B 45 REMARK 465 A B 73 REMARK 465 G B 74 REMARK 465 A B 75 REMARK 465 U B 103 REMARK 465 G B 104 REMARK 465 U B 105 REMARK 465 A B 106 REMARK 465 A B 107 REMARK 465 G B 108 REMARK 465 U B 126 REMARK 465 U B 127 REMARK 465 C B 128 REMARK 465 DT C 19 REMARK 465 DA C 20 REMARK 465 DA C 21 REMARK 465 DA C 22 REMARK 465 DT C 23 REMARK 465 DG C 24 REMARK 465 DT C 25 REMARK 465 DT C 26 REMARK 465 DA C 27 REMARK 465 DG C 28 REMARK 465 DA C 29 REMARK 465 DG C 30 REMARK 465 DT C 31 REMARK 465 DG C 32 REMARK 465 DA C 33 REMARK 465 DC C 34 REMARK 465 DC C 35 REMARK 465 DG D 1 REMARK 465 DG D 2 REMARK 465 DT D 3 REMARK 465 DC D 4 REMARK 465 DA D 5 REMARK 465 DC D 6 REMARK 465 DT D 7 REMARK 465 DC D 8 REMARK 465 DT D 9 REMARK 465 DA D 10 REMARK 465 DA D 11 REMARK 465 DC D 12 REMARK 465 DA D 13 REMARK 465 DT D 14 REMARK 465 DT D 15 REMARK 465 DT D 16 REMARK 465 DA D 17 REMARK 465 DA D 18 REMARK 465 DT D 19 REMARK 465 DG D 20 REMARK 465 DT D 21 REMARK 465 DG D 22 REMARK 465 SER E 0 REMARK 465 PHE E 88 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 87 CG OD1 ND2 REMARK 470 LEU A 90 CG CD1 CD2 REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 130 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 PHE A 250 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 292 CG CD1 CD2 REMARK 470 ASP A 300 CG OD1 OD2 REMARK 470 TYR A 306 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 341 CG SD CE REMARK 470 TYR A 346 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 ASP A 411 CG OD1 OD2 REMARK 470 GLN A 429 CG CD OE1 NE2 REMARK 470 GLN A 430 CG CD OE1 NE2 REMARK 470 ARG A 439 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 453 CG OD1 ND2 REMARK 470 ASP A 463 CG OD1 OD2 REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 665 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 668 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 685 CG CD CE NZ REMARK 470 GLN A 694 CG CD OE1 NE2 REMARK 470 LYS A 707 CG CD CE NZ REMARK 470 ARG A 709 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 710 CG CD OE1 OE2 REMARK 470 GLU A 958 CG CD OE1 OE2 REMARK 470 LYS A 984 CG CD CE NZ REMARK 470 LYS A 985 CG CD CE NZ REMARK 470 GLU A1020 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 891 O2' U B 56 2.10 REMARK 500 O HIS A 98 O2' U B 59 2.13 REMARK 500 O2' G B 69 O ASN E 26 2.16 REMARK 500 OP1 U B 124 NZ LYS E 32 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 99 52.39 -91.01 REMARK 500 HIS A 110 139.01 82.73 REMARK 500 GLN A 160 31.73 -94.01 REMARK 500 GLU A 176 47.88 -92.47 REMARK 500 VAL A 177 -51.84 -129.37 REMARK 500 PHE A 216 53.23 -91.17 REMARK 500 SER A 237 -141.67 44.66 REMARK 500 CYS A 248 -11.68 71.25 REMARK 500 THR A 249 -0.62 60.76 REMARK 500 GLU A 253 -68.96 -100.09 REMARK 500 LEU A 358 54.46 -90.91 REMARK 500 LEU A 405 47.62 -91.60 REMARK 500 LYS A 412 162.61 71.37 REMARK 500 THR A 498 -65.90 61.17 REMARK 500 VAL A 666 -61.42 -121.07 REMARK 500 LEU A 680 159.92 63.55 REMARK 500 ASN A 782 70.10 -155.39 REMARK 500 ASP A 874 -1.74 65.65 REMARK 500 GLN A1016 18.91 56.95 REMARK 500 ASN A1041 63.30 60.99 REMARK 500 LYS A1046 85.82 -156.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34919 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF HPACAS9-SGRNA-DSDNA IN THE PRESENCE OF ACRIIC4 DBREF 8HNV A 1 1054 UNP F0ET08 F0ET08_HAEPA 1 1054 DBREF 8HNV B 1 128 PDB 8HNV 8HNV 1 128 DBREF 8HNV C 1 35 PDB 8HNV 8HNV 1 35 DBREF 8HNV D 1 35 PDB 8HNV 8HNV 1 35 DBREF 8HNV E 0 88 PDB 8HNV 8HNV 0 88 SEQADV 8HNV SER A 0 UNP F0ET08 EXPRESSION TAG SEQADV 8HNV ALA A 13 UNP F0ET08 ASP 13 ENGINEERED MUTATION SEQADV 8HNV ALA A 581 UNP F0ET08 HIS 581 ENGINEERED MUTATION SEQRES 1 A 1055 SER MET GLU ASN LYS ASN LEU ASN TYR ILE LEU GLY LEU SEQRES 2 A 1055 ALA LEU GLY ILE ALA SER VAL GLY TRP ALA VAL VAL GLU SEQRES 3 A 1055 ILE ASP GLU LYS GLU ASN PRO LEU ARG LEU ILE ASP VAL SEQRES 4 A 1055 GLY VAL ARG THR PHE GLU ARG ALA GLU VAL PRO LYS THR SEQRES 5 A 1055 GLY GLU SER LEU ALA LEU SER ARG ARG LEU ALA ARG SER SEQRES 6 A 1055 ALA ARG ARG LEU THR GLN ARG ARG VAL ALA ARG LEU LYS SEQRES 7 A 1055 LYS ALA LYS ARG LEU LEU LYS SER GLU ASN ILE LEU LEU SEQRES 8 A 1055 SER THR ASP GLU ARG LEU PRO HIS GLN VAL TRP GLN LEU SEQRES 9 A 1055 ARG VAL GLU GLY LEU ASP HIS LYS LEU GLU ARG GLN GLU SEQRES 10 A 1055 TRP ALA ALA VAL LEU LEU HIS LEU ILE LYS HIS ARG GLY SEQRES 11 A 1055 TYR LEU SER GLN ARG LYS ASN GLU SER LYS SER GLU ASN SEQRES 12 A 1055 LYS GLU LEU GLY ALA LEU LEU SER GLY VAL ASP ASN ASN SEQRES 13 A 1055 HIS LYS LEU LEU GLN GLN ALA THR TYR ARG SER PRO ALA SEQRES 14 A 1055 GLU LEU ALA VAL LYS LYS PHE GLU VAL GLU GLU GLY HIS SEQRES 15 A 1055 ILE ARG ASN GLN GLN GLY ALA TYR THR HIS THR PHE SER SEQRES 16 A 1055 ARG LEU ASP LEU LEU ALA GLU MET GLU LEU LEU PHE SER SEQRES 17 A 1055 ARG GLN GLN HIS PHE GLY ASN PRO PHE ALA SER GLU LYS SEQRES 18 A 1055 LEU LEU GLU ASN LEU THR ALA LEU LEU MET TRP GLN LYS SEQRES 19 A 1055 PRO ALA LEU SER GLY GLU ALA ILE LEU LYS MET LEU GLY SEQRES 20 A 1055 LYS CYS THR PHE GLU ASP GLU TYR LYS ALA ALA LYS ASN SEQRES 21 A 1055 THR TYR SER ALA GLU ARG PHE VAL TRP ILE THR LYS LEU SEQRES 22 A 1055 ASN ASN LEU ARG ILE GLN GLU ASN GLY LEU GLU ARG ALA SEQRES 23 A 1055 LEU ASN ASP ASN GLU ARG LEU ALA LEU MET GLU GLN PRO SEQRES 24 A 1055 TYR ASP LYS ASN ARG LEU PHE TYR SER GLN VAL ARG SER SEQRES 25 A 1055 ILE LEU LYS LEU SER ASP GLU ALA ILE PHE LYS GLY LEU SEQRES 26 A 1055 ARG TYR SER GLY GLU ASP LYS LYS ALA ILE GLU THR LYS SEQRES 27 A 1055 ALA VAL LEU MET GLU MET LYS ALA TYR HIS GLN ILE ARG SEQRES 28 A 1055 LYS VAL LEU GLU GLY ASN ASN LEU LYS ALA GLU TRP ALA SEQRES 29 A 1055 GLU LEU LYS ALA ASN PRO THR LEU LEU ASP GLU ILE GLY SEQRES 30 A 1055 THR ALA PHE SER LEU TYR LYS THR ASP GLU ASP ILE SER SEQRES 31 A 1055 ALA TYR LEU ALA GLY LYS LEU SER GLN PRO VAL LEU ASN SEQRES 32 A 1055 ALA LEU LEU GLU ASN LEU SER PHE ASP LYS PHE ILE GLN SEQRES 33 A 1055 LEU SER LEU LYS ALA LEU TYR LYS LEU LEU PRO LEU MET SEQRES 34 A 1055 GLN GLN GLY LEU ARG TYR ASP GLU ALA CYS ARG GLU ILE SEQRES 35 A 1055 TYR GLY ASP HIS TYR GLY LYS LYS THR GLU GLU ASN HIS SEQRES 36 A 1055 HIS PHE LEU PRO GLN ILE PRO ALA ASP GLU ILE ARG ASN SEQRES 37 A 1055 PRO VAL VAL LEU ARG THR LEU THR GLN ALA ARG LYS VAL SEQRES 38 A 1055 ILE ASN GLY VAL VAL ARG LEU TYR GLY SER PRO ALA ARG SEQRES 39 A 1055 ILE HIS ILE GLU THR GLY ARG GLU VAL GLY LYS SER TYR SEQRES 40 A 1055 LYS ASP ARG ARG GLU LEU GLU LYS ARG GLN GLU GLU ASN SEQRES 41 A 1055 ARG LYS GLN ARG GLU ASN ALA ILE LYS GLU PHE LYS GLU SEQRES 42 A 1055 TYR PHE PRO HIS PHE ALA GLY GLU PRO LYS ALA LYS ASP SEQRES 43 A 1055 ILE LEU LYS MET ARG LEU TYR LYS GLN GLN ASN ALA LYS SEQRES 44 A 1055 CYS LEU TYR SER GLY LYS PRO ILE GLU LEU HIS ARG LEU SEQRES 45 A 1055 LEU GLU LYS GLY TYR VAL GLU VAL ASP ALA ALA LEU PRO SEQRES 46 A 1055 PHE SER ARG THR TRP ASP ASP SER PHE ASN ASN LYS VAL SEQRES 47 A 1055 LEU VAL LEU ALA ASN GLU ASN GLN ASN LYS GLY ASN LEU SEQRES 48 A 1055 THR PRO PHE GLU TRP LEU ASP GLY LYS HIS ASN SER GLU SEQRES 49 A 1055 ARG TRP ARG ALA PHE LYS ALA LEU VAL GLU THR SER ALA SEQRES 50 A 1055 PHE PRO TYR ALA LYS LYS GLN ARG ILE LEU SER GLN LYS SEQRES 51 A 1055 LEU ASP GLU LYS GLY PHE ILE GLU ARG ASN LEU ASN ASP SEQRES 52 A 1055 THR ARG TYR VAL ALA ARG PHE LEU CYS ASN PHE ILE ALA SEQRES 53 A 1055 ASP ASN MET HIS LEU THR GLY GLU GLY LYS ARG LYS VAL SEQRES 54 A 1055 PHE ALA SER ASN GLY GLN ILE THR ALA LEU LEU ARG SER SEQRES 55 A 1055 ARG TRP GLY LEU ALA LYS SER ARG GLU ASP ASN ASP ARG SEQRES 56 A 1055 HIS HIS ALA LEU ASP ALA VAL VAL VAL ALA CYS SER THR SEQRES 57 A 1055 VAL ALA MET GLN GLN LYS ILE THR ARG PHE VAL ARG PHE SEQRES 58 A 1055 GLU ALA GLY ASP VAL PHE THR GLY GLU ARG ILE ASP ARG SEQRES 59 A 1055 GLU THR GLY GLU ILE ILE PRO LEU HIS PHE PRO THR PRO SEQRES 60 A 1055 TRP GLN PHE PHE LYS GLN GLU VAL GLU ILE ARG ILE PHE SEQRES 61 A 1055 SER ASP ASN PRO LYS LEU GLU LEU GLU ASN ARG LEU PRO SEQRES 62 A 1055 ASP ARG PRO GLN ALA ASN HIS GLU PHE VAL GLN PRO LEU SEQRES 63 A 1055 PHE VAL SER ARG MET PRO THR ARG LYS MET THR GLY GLN SEQRES 64 A 1055 GLY HIS MET GLU THR VAL LYS SER ALA LYS ARG LEU ASN SEQRES 65 A 1055 GLU GLY ILE SER VAL ILE LYS MET PRO LEU THR LYS LEU SEQRES 66 A 1055 LYS LEU LYS ASP LEU GLU LEU MET VAL ASN ARG GLU ARG SEQRES 67 A 1055 GLU LYS ASP LEU TYR ASP THR LEU LYS ALA ARG LEU GLU SEQRES 68 A 1055 ALA PHE ASN ASP ASP PRO ALA LYS ALA PHE ALA GLU PRO SEQRES 69 A 1055 PHE ILE LYS LYS GLY GLY ALA ILE VAL LYS SER VAL ARG SEQRES 70 A 1055 VAL GLU GLN ILE GLN LYS SER GLY VAL LEU VAL ARG GLU SEQRES 71 A 1055 GLY ASN GLY VAL ALA ASP ASN ALA SER MET VAL ARG VAL SEQRES 72 A 1055 ASP VAL PHE THR LYS GLY GLY LYS TYR PHE LEU VAL PRO SEQRES 73 A 1055 ILE TYR THR TRP GLN VAL ALA LYS GLY ILE LEU PRO ASN SEQRES 74 A 1055 LYS ALA ALA THR GLN TYR LYS ASP GLU GLU ASP TRP GLU SEQRES 75 A 1055 VAL MET ASP ASN SER ALA THR PHE LYS PHE SER LEU HIS SEQRES 76 A 1055 PRO ASN ASP LEU VAL LYS LEU VAL THR LYS LYS LYS THR SEQRES 77 A 1055 ILE LEU GLY TYR PHE ASN GLY LEU ASN ARG ALA THR GLY SEQRES 78 A 1055 ASN ILE ASP ILE LYS GLU HIS ASP LEU ASP LYS SER LYS SEQRES 79 A 1055 GLY LYS GLN GLY ILE PHE GLU GLY VAL GLY ILE LYS LEU SEQRES 80 A 1055 ALA LEU SER PHE GLU LYS TYR GLN VAL ASP GLU LEU GLY SEQRES 81 A 1055 LYS ASN ILE ARG LEU CYS LYS PRO SER LYS ARG GLN PRO SEQRES 82 A 1055 VAL ARG SEQRES 1 B 128 G G U C A C U C U A A C A SEQRES 2 B 128 U U U A A U C A C A C G U SEQRES 3 B 128 U G U A G C U C C C U U U SEQRES 4 B 128 U U C G A A A G A A A A A SEQRES 5 B 128 C G U U G U U A C A A U A SEQRES 6 B 128 A G A G A A A A G A U U U SEQRES 7 B 128 C U C G C A A A G C U C U SEQRES 8 B 128 G U C C C U U G A A A U G SEQRES 9 B 128 U A A G U U U C A A G G G SEQRES 10 B 128 A C A U C U U U U U C SEQRES 1 C 35 DT DG DA DA DA DT DC DA DT DA DT DG DT SEQRES 2 C 35 DG DT DG DA DT DT DA DA DA DT DG DT DT SEQRES 3 C 35 DA DG DA DG DT DG DA DC DC SEQRES 1 D 35 DG DG DT DC DA DC DT DC DT DA DA DC DA SEQRES 2 D 35 DT DT DT DA DA DT DG DT DG DT DG DA DT SEQRES 3 D 35 DA DT DG DA DT DT DT DC DA SEQRES 1 E 89 SER MET LYS ILE THR SER SER ASN PHE ALA THR ILE ALA SEQRES 2 E 89 THR SER GLU ASN PHE ALA LYS LEU SER VAL LEU PRO LYS SEQRES 3 E 89 ASN HIS ARG GLU PRO ILE LYS GLY LEU PHE LYS SER ALA SEQRES 4 E 89 VAL GLU GLN PHE SER SER ALA ARG ASP PHE PHE LYS ASN SEQRES 5 E 89 GLU ASN TYR SER LYS GLU LEU ALA GLU LYS PHE ASN LYS SEQRES 6 E 89 GLU ALA VAL ASN GLU ALA VAL GLU LYS LEU GLN LYS ALA SEQRES 7 E 89 ILE ASP LEU ALA GLU LYS GLN GLY ILE GLN PHE HELIX 1 AA1 SER A 54 GLU A 86 1 33 HELIX 2 AA2 GLN A 99 ASP A 109 1 11 HELIX 3 AA3 GLU A 113 HIS A 127 1 15 HELIX 4 AA4 LEU A 148 LEU A 159 1 12 HELIX 5 AA5 SER A 166 LYS A 173 1 8 HELIX 6 AA6 LYS A 174 GLU A 179 1 6 HELIX 7 AA7 ALA A 188 THR A 192 5 5 HELIX 8 AA8 SER A 194 PHE A 212 1 19 HELIX 9 AA9 SER A 218 TRP A 231 1 14 HELIX 10 AB1 THR A 260 LYS A 271 1 12 HELIX 11 AB2 ARG A 291 MET A 295 5 5 HELIX 12 AB3 GLU A 296 LYS A 301 1 6 HELIX 13 AB4 PHE A 305 VAL A 309 5 5 HELIX 14 AB5 MET A 343 ASN A 356 1 14 HELIX 15 AB6 LEU A 358 ASN A 368 1 11 HELIX 16 AB7 ASN A 368 TYR A 382 1 15 HELIX 17 AB8 THR A 384 LEU A 392 1 9 HELIX 18 AB9 SER A 397 LEU A 405 1 9 HELIX 19 AC1 SER A 417 GLN A 430 1 14 HELIX 20 AC2 GLU A 436 TYR A 442 1 7 HELIX 21 AC3 ASN A 467 GLY A 489 1 23 HELIX 22 AC4 VAL A 666 MET A 678 1 13 HELIX 23 AC5 ASN A 692 TRP A 703 1 12 HELIX 24 AC6 ASN A 712 ARG A 714 5 3 HELIX 25 AC7 HIS A 715 VAL A 722 1 8 HELIX 26 AC8 VAL A 723 CYS A 725 5 3 HELIX 27 AC9 LYS A 771 PHE A 779 1 9 HELIX 28 AD1 ASN A 782 LEU A 787 1 6 HELIX 29 AD2 ARG A 829 GLU A 832 5 4 HELIX 30 AD3 THR A 842 LEU A 844 5 3 HELIX 31 AD4 LYS A 845 LEU A 851 1 7 HELIX 32 AD5 GLU A 858 PHE A 872 1 15 HELIX 33 AD6 ASP A 875 PHE A 880 1 6 HELIX 34 AD7 THR A 938 GLY A 944 1 7 HELIX 35 AD8 ASP A 956 TRP A 960 5 5 HELIX 36 AD9 ASN E 7 ALA E 12 1 6 HELIX 37 AE1 THR E 13 LEU E 20 1 8 HELIX 38 AE2 SER E 21 LEU E 23 5 3 HELIX 39 AE3 PRO E 24 SER E 44 1 21 HELIX 40 AE4 ARG E 46 LYS E 50 5 5 HELIX 41 AE5 SER E 55 GLN E 84 1 30 SHEET 1 AA1 3 TYR A 8 ILE A 9 0 SHEET 2 AA1 3 SER A 18 GLU A 25 -1 O VAL A 24 N ILE A 9 SHEET 3 AA1 3 LEU A 12 ALA A 13 -1 N ALA A 13 O GLY A 20 SHEET 1 AA2 3 TYR A 8 ILE A 9 0 SHEET 2 AA2 3 SER A 18 GLU A 25 -1 O VAL A 24 N ILE A 9 SHEET 3 AA2 3 LEU A 35 THR A 42 -1 O ARG A 41 N VAL A 19 SHEET 1 AA3 2 ILE A 494 ILE A 496 0 SHEET 2 AA3 2 VAL A 688 ALA A 690 1 O PHE A 689 N ILE A 494 SHEET 1 AA4 3 LYS A 825 SER A 826 0 SHEET 2 AA4 3 GLY A 912 ALA A 914 -1 O VAL A 913 N LYS A 825 SHEET 3 AA4 3 VAL A 905 VAL A 907 -1 N VAL A 905 O ALA A 914 SHEET 1 AA5 2 ILE A 834 PRO A 840 0 SHEET 2 AA5 2 SER A 894 ILE A 900 -1 O GLN A 899 N SER A 835 SHEET 1 AA6 2 PHE A 884 ILE A 885 0 SHEET 2 AA6 2 ILE A 891 VAL A 892 -1 O VAL A 892 N PHE A 884 SHEET 1 AA7 3 LYS A 930 TYR A 937 0 SHEET 2 AA7 3 MET A 919 LYS A 927 -1 N ARG A 921 O ILE A 936 SHEET 3 AA7 3 THR A 968 LEU A 973 -1 O LEU A 973 N VAL A 922 SHEET 1 AA8 6 ILE A1018 VAL A1022 0 SHEET 2 AA8 6 ILE A1002 GLU A1006 -1 N ILE A1004 O PHE A1019 SHEET 3 AA8 6 ILE A 988 TYR A 991 -1 N TYR A 991 O LYS A1005 SHEET 4 AA8 6 LEU A 978 VAL A 982 -1 N VAL A 979 O GLY A 990 SHEET 5 AA8 6 SER A1029 GLN A1034 -1 O GLU A1031 N LYS A 980 SHEET 6 AA8 6 ARG A1043 LEU A1044 -1 O ARG A1043 N GLN A1034 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000