HEADER IMMUNE SYSTEM/VIRAL PROTEIN 12-DEC-22 8HPF TITLE CRYO-EM STRUCTURE OF SARS-COV-2 OMICRON BA.2 RBD IN COMPLEX WITH FAB TITLE 2 L4.65 AND L5.34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S2'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB L4.65; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FAB L4.65; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: FAB L5.34; COMPND 15 CHAIN: M; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: FAB L5.34; COMPND 19 CHAIN: N; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 STRAIN: OMICRON/BA.2; SOURCE 7 GENE: S, 2; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_TAXID: 9606; SOURCE 28 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, OMICRON BA.2 RBD, CRYO-EM STRUCTURE, FAB, IMMUNE KEYWDS 2 SYSTEM/VIRAL PROTEIN, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR G.F.GAO,S.LIU REVDAT 2 31-JAN-24 8HPF 1 JRNL REVDAT 1 20-DEC-23 8HPF 0 JRNL AUTH S.GUO,Y.ZHENG,Z.GAO,M.DUAN,S.LIU,P.DU,X.XU,K.XU,X.ZHAO, JRNL AUTH 2 Y.CHAI,P.WANG,Q.ZHAO,G.F.GAO,L.DAI JRNL TITL DOSING INTERVAL REGIMEN SHAPES POTENCY AND BREADTH OF JRNL TITL 2 ANTIBODY REPERTOIRE AFTER VACCINATION OF SARS-COV-2 RBD JRNL TITL 3 PROTEIN SUBUNIT VACCINE. JRNL REF CELL DISCOV V. 9 79 2023 JRNL REFN ESSN 2056-5968 JRNL PMID 37507370 JRNL DOI 10.1038/S41421-023-00585-5 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.340 REMARK 3 NUMBER OF PARTICLES : 588002 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8HPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 20-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300034087. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF SARS-COV-2 REMARK 245 OMICRON BA.2 RBD IN COMPLEX REMARK 245 WITH FAB L4.65 AND L5.34 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 5000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 139.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, H, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 448 CA - CB - SG ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO H 89 CA - N - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 387 -164.88 -78.18 REMARK 500 PRO A 389 -16.23 -48.48 REMARK 500 PHE A 390 67.03 60.31 REMARK 500 ASP A 405 -60.09 -94.93 REMARK 500 PHE A 502 -132.00 54.65 REMARK 500 ALA L 52 -7.66 70.93 REMARK 500 LYS L 170 -60.79 -92.59 REMARK 500 ASN H 57 -2.85 68.76 REMARK 500 ASP H 91 2.11 -67.57 REMARK 500 SER H 106 -4.54 66.53 REMARK 500 TYR H 110 71.42 60.84 REMARK 500 SER H 128 52.90 -91.80 REMARK 500 GLU M 26 -5.12 71.65 REMARK 500 LEU M 104 70.09 58.05 REMARK 500 THR M 125 128.79 -35.42 REMARK 500 ASP M 153 64.52 60.35 REMARK 500 PRO M 158 -174.33 -60.77 REMARK 500 THR M 200 -60.73 -93.93 REMARK 500 SER N 30 -127.13 56.47 REMARK 500 ALA N 51 -5.90 67.86 REMARK 500 SER N 52 -15.18 -140.01 REMARK 500 THR N 76 -60.25 -92.41 REMARK 500 ARG N 96 24.42 -144.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34931 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF SARS-COV-2 OMICRON BA.2 RBD IN COMPLEX WITH REMARK 900 FAB L4.65 AND L5.34 DBREF 8HPF A 351 543 UNP P0DTC2 SPIKE_SARS2 335 527 DBREF 8HPF L 1 215 PDB 8HPF 8HPF 1 215 DBREF 8HPF H 1 231 PDB 8HPF 8HPF 1 231 DBREF 8HPF M 2 225 PDB 8HPF 8HPF 2 225 DBREF 8HPF N 1 216 PDB 8HPF 8HPF 1 216 SEQADV 8HPF ASP A 355 UNP P0DTC2 GLY 339 VARIANT SEQADV 8HPF PHE A 387 UNP P0DTC2 SER 371 VARIANT SEQADV 8HPF PRO A 389 UNP P0DTC2 SER 373 VARIANT SEQADV 8HPF PHE A 391 UNP P0DTC2 SER 375 VARIANT SEQADV 8HPF ALA A 392 UNP P0DTC2 THR 376 VARIANT SEQADV 8HPF ASN A 421 UNP P0DTC2 ASP 405 VARIANT SEQADV 8HPF SER A 424 UNP P0DTC2 ARG 408 VARIANT SEQADV 8HPF ASN A 433 UNP P0DTC2 LYS 417 VARIANT SEQADV 8HPF LYS A 456 UNP P0DTC2 ASN 440 VARIANT SEQADV 8HPF ASN A 493 UNP P0DTC2 SER 477 VARIANT SEQADV 8HPF LYS A 494 UNP P0DTC2 THR 478 VARIANT SEQADV 8HPF ALA A 500 UNP P0DTC2 GLU 484 VARIANT SEQADV 8HPF ARG A 509 UNP P0DTC2 GLN 493 VARIANT SEQADV 8HPF ARG A 514 UNP P0DTC2 GLN 498 VARIANT SEQADV 8HPF TYR A 517 UNP P0DTC2 ASN 501 VARIANT SEQADV 8HPF HIS A 521 UNP P0DTC2 TYR 505 VARIANT SEQRES 1 A 193 LEU CYS PRO PHE ASP GLU VAL PHE ASN ALA THR ARG PHE SEQRES 2 A 193 ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SER ASN SEQRES 3 A 193 CYS VAL ALA ASP TYR SER VAL LEU TYR ASN PHE ALA PRO SEQRES 4 A 193 PHE PHE ALA PHE LYS CYS TYR GLY VAL SER PRO THR LYS SEQRES 5 A 193 LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SER SEQRES 6 A 193 PHE VAL ILE ARG GLY ASN GLU VAL SER GLN ILE ALA PRO SEQRES 7 A 193 GLY GLN THR GLY ASN ILE ALA ASP TYR ASN TYR LYS LEU SEQRES 8 A 193 PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SER SEQRES 9 A 193 ASN LYS LEU ASP SER LYS VAL GLY GLY ASN TYR ASN TYR SEQRES 10 A 193 LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS PRO PHE SEQRES 11 A 193 GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA GLY ASN SEQRES 12 A 193 LYS PRO CYS ASN GLY VAL ALA GLY PHE ASN CYS TYR PHE SEQRES 13 A 193 PRO LEU ARG SER TYR GLY PHE ARG PRO THR TYR GLY VAL SEQRES 14 A 193 GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SER PHE GLU SEQRES 15 A 193 LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER PHE ASP SER ARG TYR LEU GLY TRP TYR GLN GLN SEQRES 4 L 215 LYS SER GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 PHE GLY ASP SER PRO PHE THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 231 GLN ILE THR LEU LYS GLU SER GLY PRO THR LEU VAL LYS SEQRES 2 H 231 PRO THR GLN THR LEU THR LEU THR CYS THR PHE SER GLY SEQRES 3 H 231 PHE SER LEU SER THR SER GLY VAL GLY VAL ALA TRP ILE SEQRES 4 H 231 ARG GLN PRO PRO GLY LYS ALA LEU GLU TRP LEU ALA LEU SEQRES 5 H 231 ILE TYR TRP ASP ASN ASP LYS ARG SER SER PRO SER LEU SEQRES 6 H 231 ASN ASN ARG LEU THR ILE THR LYS ASP THR SER LYS ASN SEQRES 7 H 231 GLN VAL VAL LEU THR MET THR ASN MET ASP PRO GLU ASP SEQRES 8 H 231 THR ALA THR TYR TYR CYS ALA HIS PHE PHE SER HIS TYR SEQRES 9 H 231 ASP SER SER ASN TYR TYR TYR GLY SER TRP PHE ASP PRO SEQRES 10 H 231 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER SEQRES 11 H 231 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 H 231 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 13 H 231 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 H 231 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 H 231 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 H 231 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 H 231 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 H 231 VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 M 224 VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN PRO SEQRES 2 M 224 GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLU ILE SEQRES 3 M 224 THR VAL SER SER ASN TYR MET ASN TRP VAL ARG GLN ALA SEQRES 4 M 224 PRO GLY LYS GLY LEU GLU TRP VAL SER VAL VAL TYR PRO SEQRES 5 M 224 GLY GLY SER THR PHE TYR THR ASP SER VAL LYS GLY ARG SEQRES 6 M 224 PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU TYR SEQRES 7 M 224 LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA VAL SEQRES 8 M 224 TYR TYR CYS ALA ARG GLU SER GLY GLY PHE PRO LEU ALA SEQRES 9 M 224 GLU GLY ALA PHE ASP ILE TRP GLY GLN GLY THR MET VAL SEQRES 10 M 224 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 M 224 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 M 224 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 M 224 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 M 224 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 M 224 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 M 224 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 M 224 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 M 224 LYS SER CYS SEQRES 1 N 216 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 N 216 SER VAL GLY ASP ARG VAL SER ILE THR CYS ARG ALA SER SEQRES 3 N 216 GLN SER ILE SER THR HIS LEU HIS TRP TYR GLN GLN LYS SEQRES 4 N 216 PRO GLY LYS ALA PRO LYS LEU LEU ILE SER ALA ALA SER SEQRES 5 N 216 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 N 216 GLY SER GLY THR ASP PHE THR LEU THR ILE THR SER LEU SEQRES 7 N 216 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 N 216 TYR SER THR PRO ARG GLY LEU SER PHE GLY GLY GLY THR SEQRES 9 N 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 N 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 N 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 N 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 N 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 N 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 N 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 N 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 N 216 LYS SER PHE ASN ARG GLY GLU CYS HET NAG A1201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 6 NAG C8 H15 N O6 HELIX 1 AA1 PHE A 354 ASN A 359 1 6 HELIX 2 AA2 SER A 365 TRP A 369 5 5 HELIX 3 AA3 TYR A 381 PHE A 387 1 7 HELIX 4 AA4 ASN A 421 ILE A 426 5 6 HELIX 5 AA5 GLY A 432 ASN A 438 1 7 HELIX 6 AA6 SER A 454 SER A 459 1 6 HELIX 7 AA7 ASP L 30 ARG L 32 5 3 HELIX 8 AA8 GLU L 80 PHE L 84 5 5 HELIX 9 AA9 SER L 122 SER L 128 1 7 HELIX 10 AB1 LYS L 184 LYS L 189 1 6 HELIX 11 AB2 PRO H 63 ASN H 66 5 4 HELIX 12 AB3 SER H 171 ALA H 173 5 3 HELIX 13 AB4 PRO H 200 LEU H 204 5 5 HELIX 14 AB5 THR M 28 ASN M 32 5 5 HELIX 15 AB6 ASP M 61 LYS M 64 5 4 HELIX 16 AB7 ARG M 86 THR M 90 5 5 HELIX 17 AB8 PRO M 194 GLY M 199 5 6 HELIX 18 AB9 GLN N 79 PHE N 83 5 5 HELIX 19 AC1 SER N 123 LYS N 128 1 6 HELIX 20 AC2 SER N 184 LYS N 190 1 7 SHEET 1 AA1 5 ASN A 370 ILE A 374 0 SHEET 2 AA1 5 ASN A 410 ARG A 419 -1 O ALA A 413 N LYS A 372 SHEET 3 AA1 5 PRO A 523 GLU A 532 -1 O VAL A 526 N PHE A 416 SHEET 4 AA1 5 GLY A 447 ASN A 453 -1 N CYS A 448 O LEU A 529 SHEET 5 AA1 5 ALA A 392 TYR A 396 -1 N ALA A 392 O ALA A 451 SHEET 1 AA2 2 LEU A 468 ARG A 470 0 SHEET 2 AA2 2 LEU A 508 SER A 510 -1 O ARG A 509 N TYR A 469 SHEET 1 AA3 2 TYR A 489 GLN A 490 0 SHEET 2 AA3 2 CYS A 504 TYR A 505 -1 O TYR A 505 N TYR A 489 SHEET 1 AA4 4 LEU L 4 SER L 7 0 SHEET 2 AA4 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA4 4 ASP L 71 ILE L 76 -1 O ILE L 76 N ALA L 19 SHEET 4 AA4 4 SER L 64 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AA5 6 THR L 10 SER L 12 0 SHEET 2 AA5 6 THR L 103 GLU L 106 1 O LYS L 104 N LEU L 11 SHEET 3 AA5 6 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AA5 6 LEU L 34 GLN L 39 -1 N GLN L 39 O VAL L 86 SHEET 5 AA5 6 ARG L 46 TYR L 50 -1 O ARG L 46 N GLN L 38 SHEET 6 AA5 6 SER L 54 ARG L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA6 4 SER L 115 PHE L 119 0 SHEET 2 AA6 4 THR L 130 PHE L 140 -1 O ASN L 138 N SER L 115 SHEET 3 AA6 4 TYR L 174 SER L 183 -1 O LEU L 180 N VAL L 133 SHEET 4 AA6 4 SER L 160 THR L 165 -1 N THR L 165 O SER L 175 SHEET 1 AA7 3 LYS L 146 VAL L 151 0 SHEET 2 AA7 3 VAL L 192 THR L 198 -1 O ALA L 194 N LYS L 150 SHEET 3 AA7 3 VAL L 206 ASN L 211 -1 O PHE L 210 N TYR L 193 SHEET 1 AA8 4 THR H 3 SER H 7 0 SHEET 2 AA8 4 THR H 17 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA8 4 GLN H 79 THR H 85 -1 O VAL H 80 N CYS H 22 SHEET 4 AA8 4 LEU H 69 ASP H 74 -1 N ASP H 74 O GLN H 79 SHEET 1 AA9 6 LEU H 11 VAL H 12 0 SHEET 2 AA9 6 THR H 122 VAL H 126 1 O THR H 125 N VAL H 12 SHEET 3 AA9 6 ALA H 93 SER H 102 -1 N TYR H 95 O THR H 122 SHEET 4 AA9 6 GLY H 35 GLN H 41 -1 N ILE H 39 O TYR H 96 SHEET 5 AA9 6 GLU H 48 TYR H 54 -1 O GLU H 48 N ARG H 40 SHEET 6 AA9 6 LYS H 59 SER H 61 -1 O ARG H 60 N LEU H 52 SHEET 1 AB1 4 LEU H 11 VAL H 12 0 SHEET 2 AB1 4 THR H 122 VAL H 126 1 O THR H 125 N VAL H 12 SHEET 3 AB1 4 ALA H 93 SER H 102 -1 N TYR H 95 O THR H 122 SHEET 4 AB1 4 SER H 113 ASP H 116 -1 O TRP H 114 N PHE H 101 SHEET 1 AB2 4 SER H 135 LEU H 139 0 SHEET 2 AB2 4 ALA H 151 TYR H 160 -1 O LEU H 156 N PHE H 137 SHEET 3 AB2 4 TYR H 191 VAL H 199 -1 O VAL H 199 N ALA H 151 SHEET 4 AB2 4 VAL H 178 THR H 180 -1 N HIS H 179 O VAL H 196 SHEET 1 AB3 4 SER H 135 LEU H 139 0 SHEET 2 AB3 4 ALA H 151 TYR H 160 -1 O LEU H 156 N PHE H 137 SHEET 3 AB3 4 TYR H 191 VAL H 199 -1 O VAL H 199 N ALA H 151 SHEET 4 AB3 4 VAL H 184 LEU H 185 -1 N VAL H 184 O SER H 192 SHEET 1 AB4 3 THR H 166 TRP H 169 0 SHEET 2 AB4 3 TYR H 209 HIS H 215 -1 O ASN H 212 N SER H 168 SHEET 3 AB4 3 THR H 220 VAL H 226 -1 O LYS H 224 N CYS H 211 SHEET 1 AB5 4 GLN M 3 SER M 7 0 SHEET 2 AB5 4 LEU M 18 SER M 25 -1 O ALA M 23 N VAL M 5 SHEET 3 AB5 4 THR M 77 MET M 82 -1 O MET M 82 N LEU M 18 SHEET 4 AB5 4 PHE M 67 ASP M 72 -1 N SER M 70 O TYR M 79 SHEET 1 AB6 6 GLY M 10 VAL M 12 0 SHEET 2 AB6 6 THR M 116 VAL M 120 1 O THR M 119 N GLY M 10 SHEET 3 AB6 6 ALA M 91 GLU M 98 -1 N ALA M 91 O VAL M 118 SHEET 4 AB6 6 TYR M 33 GLN M 39 -1 N GLN M 39 O VAL M 92 SHEET 5 AB6 6 LEU M 45 VAL M 51 -1 O GLU M 46 N ARG M 38 SHEET 6 AB6 6 THR M 57 TYR M 59 -1 O PHE M 58 N VAL M 50 SHEET 1 AB7 4 GLY M 10 VAL M 12 0 SHEET 2 AB7 4 THR M 116 VAL M 120 1 O THR M 119 N GLY M 10 SHEET 3 AB7 4 ALA M 91 GLU M 98 -1 N ALA M 91 O VAL M 118 SHEET 4 AB7 4 PHE M 109 TRP M 112 -1 O ILE M 111 N ARG M 97 SHEET 1 AB8 4 SER M 129 LEU M 133 0 SHEET 2 AB8 4 ALA M 145 TYR M 154 -1 O LEU M 150 N PHE M 131 SHEET 3 AB8 4 TYR M 185 VAL M 193 -1 O VAL M 191 N LEU M 147 SHEET 4 AB8 4 HIS M 173 THR M 174 -1 N HIS M 173 O VAL M 190 SHEET 1 AB9 4 SER M 129 LEU M 133 0 SHEET 2 AB9 4 ALA M 145 TYR M 154 -1 O LEU M 150 N PHE M 131 SHEET 3 AB9 4 TYR M 185 VAL M 193 -1 O VAL M 191 N LEU M 147 SHEET 4 AB9 4 VAL M 178 LEU M 179 -1 N VAL M 178 O SER M 186 SHEET 1 AC1 3 THR M 160 TRP M 163 0 SHEET 2 AC1 3 TYR M 203 HIS M 209 -1 O ASN M 206 N SER M 162 SHEET 3 AC1 3 THR M 214 VAL M 220 -1 O VAL M 216 N VAL M 207 SHEET 1 AC2 4 MET N 4 SER N 7 0 SHEET 2 AC2 4 VAL N 19 ALA N 25 -1 O THR N 22 N SER N 7 SHEET 3 AC2 4 ASP N 70 ILE N 75 -1 O PHE N 71 N CYS N 23 SHEET 4 AC2 4 SER N 63 SER N 67 -1 N SER N 63 O THR N 74 SHEET 1 AC3 6 SER N 10 SER N 12 0 SHEET 2 AC3 6 THR N 104 GLU N 107 1 O LYS N 105 N LEU N 11 SHEET 3 AC3 6 THR N 85 GLN N 90 -1 N TYR N 86 O THR N 104 SHEET 4 AC3 6 LEU N 33 GLN N 38 -1 N GLN N 38 O THR N 85 SHEET 5 AC3 6 LYS N 45 SER N 49 -1 O LYS N 45 N GLN N 37 SHEET 6 AC3 6 THR N 53 LEU N 54 -1 O THR N 53 N SER N 49 SHEET 1 AC4 4 SER N 10 SER N 12 0 SHEET 2 AC4 4 THR N 104 GLU N 107 1 O LYS N 105 N LEU N 11 SHEET 3 AC4 4 THR N 85 GLN N 90 -1 N TYR N 86 O THR N 104 SHEET 4 AC4 4 SER N 99 PHE N 100 -1 O SER N 99 N GLN N 90 SHEET 1 AC5 4 SER N 116 PHE N 120 0 SHEET 2 AC5 4 ALA N 132 PHE N 141 -1 O VAL N 135 N PHE N 120 SHEET 3 AC5 4 TYR N 175 LEU N 183 -1 O LEU N 177 N LEU N 138 SHEET 4 AC5 4 SER N 161 VAL N 165 -1 N SER N 164 O SER N 178 SHEET 1 AC6 3 LYS N 147 VAL N 152 0 SHEET 2 AC6 3 VAL N 193 THR N 199 -1 O THR N 199 N LYS N 147 SHEET 3 AC6 3 VAL N 207 ASN N 212 -1 O VAL N 207 N VAL N 198 SSBOND 1 CYS A 352 CYS A 377 1555 1555 2.03 SSBOND 2 CYS A 395 CYS A 448 1555 1555 2.05 SSBOND 3 CYS A 407 CYS A 541 1555 1555 2.03 SSBOND 4 CYS A 496 CYS A 504 1555 1555 2.03 SSBOND 5 CYS L 23 CYS L 89 1555 1555 2.04 SSBOND 6 CYS L 135 CYS L 195 1555 1555 2.04 SSBOND 7 CYS L 215 CYS H 231 1555 1555 2.03 SSBOND 8 CYS H 22 CYS H 97 1555 1555 2.03 SSBOND 9 CYS H 155 CYS H 211 1555 1555 2.03 SSBOND 10 CYS M 22 CYS M 95 1555 1555 2.03 SSBOND 11 CYS M 149 CYS M 205 1555 1555 2.03 SSBOND 12 CYS M 225 CYS N 216 1555 1555 2.03 SSBOND 13 CYS N 23 CYS N 88 1555 1555 2.04 SSBOND 14 CYS N 136 CYS N 196 1555 1555 2.04 LINK ND2 ASN A 359 C1 NAG A1201 1555 1555 1.44 CISPEP 1 SER L 7 PRO L 8 0 -3.77 CISPEP 2 SER L 95 PRO L 96 0 0.20 CISPEP 3 TYR L 141 PRO L 142 0 -1.03 CISPEP 4 PHE H 161 PRO H 162 0 -7.89 CISPEP 5 GLU H 163 PRO H 164 0 -3.47 CISPEP 6 PHE M 155 PRO M 156 0 -8.43 CISPEP 7 GLU M 157 PRO M 158 0 -14.34 CISPEP 8 SER N 7 PRO N 8 0 -7.95 CISPEP 9 TYR N 142 PRO N 143 0 2.79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000