HEADER SIGNALING PROTEIN 13-DEC-22 8HPW TITLE CRYSTAL STRUCTURE OF MOUSE LGI1 LRR DOMAIN IN SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE-RICH GLIOMA-INACTIVATED PROTEIN 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: LRR DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LGI1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SYNAPTIC MODULATOR, LRR DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.LIU,F.XU REVDAT 1 13-DEC-23 8HPW 0 JRNL AUTH H.LIU,F.XU JRNL TITL CRYSTAL STRUCTURE OF MOUSE LGI1 LRR DOMAIN IN SPACE GROUP JRNL TITL 2 P21 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 27856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2400 - 5.1390 0.94 2598 121 0.1874 0.2282 REMARK 3 2 5.1390 - 4.0803 1.00 2705 143 0.1746 0.2082 REMARK 3 3 4.0803 - 3.5649 0.99 2655 168 0.1993 0.2020 REMARK 3 4 3.5649 - 3.2391 0.99 2694 129 0.2380 0.2611 REMARK 3 5 3.2391 - 3.0070 0.99 2615 166 0.2707 0.2659 REMARK 3 6 3.0070 - 2.8298 0.99 2690 126 0.2933 0.3265 REMARK 3 7 2.8298 - 2.6881 0.98 2648 128 0.2895 0.3179 REMARK 3 8 2.6881 - 2.5711 0.98 2667 123 0.2937 0.3131 REMARK 3 9 2.5711 - 2.4721 0.98 2606 135 0.3024 0.3737 REMARK 3 10 2.4721 - 2.3900 0.96 2590 149 0.3241 0.3705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4463 REMARK 3 ANGLE : 0.841 6075 REMARK 3 CHIRALITY : 0.064 697 REMARK 3 PLANARITY : 0.005 781 REMARK 3 DIHEDRAL : 16.109 1684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.1857 -12.9685 142.6507 REMARK 3 T TENSOR REMARK 3 T11: 0.6511 T22: 1.1526 REMARK 3 T33: 0.6343 T12: -0.0777 REMARK 3 T13: 0.0102 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 9.9367 L22: 8.3023 REMARK 3 L33: 9.2938 L12: 0.3435 REMARK 3 L13: -1.9791 L23: 1.4625 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: 0.1039 S13: 0.0175 REMARK 3 S21: -0.3457 S22: 0.1036 S23: -1.0456 REMARK 3 S31: -0.0413 S32: 1.8294 S33: 0.0204 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.7765 -9.7542 142.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.5602 T22: 0.5662 REMARK 3 T33: 0.3830 T12: -0.1252 REMARK 3 T13: -0.0209 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 5.0260 L22: 1.7955 REMARK 3 L33: 6.1610 L12: -1.6464 REMARK 3 L13: -1.2915 L23: 0.4411 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: 0.2891 S13: 0.3903 REMARK 3 S21: -0.2165 S22: 0.0317 S23: -0.2087 REMARK 3 S31: -0.1485 S32: 0.4692 S33: -0.0775 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6784 -9.8414 147.6976 REMARK 3 T TENSOR REMARK 3 T11: 0.6015 T22: 0.7998 REMARK 3 T33: 0.6262 T12: -0.1610 REMARK 3 T13: -0.0289 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 2.9058 L22: 4.2711 REMARK 3 L33: 3.2173 L12: -2.8261 REMARK 3 L13: -1.1678 L23: -0.8985 REMARK 3 S TENSOR REMARK 3 S11: 0.1263 S12: -0.2365 S13: -0.2813 REMARK 3 S21: -0.0756 S22: 0.0149 S23: 0.6390 REMARK 3 S31: -0.0045 S32: -0.4662 S33: -0.1155 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1273 -4.0453 154.9053 REMARK 3 T TENSOR REMARK 3 T11: 0.7442 T22: 1.3824 REMARK 3 T33: 0.5546 T12: 0.0262 REMARK 3 T13: 0.1616 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 8.2908 L22: 7.1895 REMARK 3 L33: 4.5720 L12: -4.1023 REMARK 3 L13: 2.7416 L23: -2.6669 REMARK 3 S TENSOR REMARK 3 S11: -0.5804 S12: -1.1400 S13: 0.0805 REMARK 3 S21: 0.5918 S22: 0.7324 S23: 0.4410 REMARK 3 S31: -0.6422 S32: -2.0495 S33: -0.2045 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.7629 -14.1220 118.5524 REMARK 3 T TENSOR REMARK 3 T11: 0.7124 T22: 0.8404 REMARK 3 T33: 0.3731 T12: -0.0962 REMARK 3 T13: -0.0183 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 5.1119 L22: 5.5385 REMARK 3 L33: 4.0887 L12: -0.7196 REMARK 3 L13: -0.9843 L23: -1.1720 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.0340 S13: 0.1323 REMARK 3 S21: -0.4475 S22: -0.0718 S23: -0.0397 REMARK 3 S31: -0.9540 S32: -0.0723 S33: 0.0592 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.5165 -34.7833 126.6711 REMARK 3 T TENSOR REMARK 3 T11: 0.8174 T22: 0.7977 REMARK 3 T33: 0.4765 T12: -0.0395 REMARK 3 T13: -0.0134 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 1.8777 L22: 7.8551 REMARK 3 L33: 3.6174 L12: 1.0113 REMARK 3 L13: 0.6440 L23: 0.4774 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.0905 S13: -0.3317 REMARK 3 S21: 0.8388 S22: 0.1446 S23: -0.0590 REMARK 3 S31: 0.6789 S32: 0.1720 S33: -0.1579 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 41 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.6897 -25.4855 100.1097 REMARK 3 T TENSOR REMARK 3 T11: 1.1155 T22: 1.0547 REMARK 3 T33: 0.6391 T12: -0.0348 REMARK 3 T13: -0.0709 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 6.0252 L22: 7.5810 REMARK 3 L33: 2.2334 L12: 1.4182 REMARK 3 L13: 3.4268 L23: 2.1047 REMARK 3 S TENSOR REMARK 3 S11: 0.4128 S12: 0.4922 S13: -1.2846 REMARK 3 S21: -1.6650 S22: -0.2368 S23: 1.3333 REMARK 3 S31: 1.0910 S32: -0.3601 S33: -0.0868 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 57 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.4828 -22.3362 94.8989 REMARK 3 T TENSOR REMARK 3 T11: 0.8157 T22: 0.7500 REMARK 3 T33: 0.5024 T12: -0.0066 REMARK 3 T13: 0.0072 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 2.2229 L22: 9.5916 REMARK 3 L33: 8.3000 L12: 1.8527 REMARK 3 L13: -0.4593 L23: -0.0102 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: 0.7513 S13: -0.7169 REMARK 3 S21: -0.4582 S22: -0.3850 S23: -0.5524 REMARK 3 S31: 2.2712 S32: -0.2554 S33: 0.3306 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 71 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.6571 -13.6327 99.3954 REMARK 3 T TENSOR REMARK 3 T11: 0.6524 T22: 0.9993 REMARK 3 T33: 0.4356 T12: 0.0509 REMARK 3 T13: 0.0271 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 4.0591 L22: 4.3099 REMARK 3 L33: 6.8097 L12: 0.6996 REMARK 3 L13: 0.2345 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.1096 S12: 0.1247 S13: -0.0772 REMARK 3 S21: -0.0644 S22: 0.0021 S23: -0.3375 REMARK 3 S31: 0.0376 S32: 1.4663 S33: 0.1233 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 146 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.2550 -5.0983 105.6141 REMARK 3 T TENSOR REMARK 3 T11: 0.7969 T22: 1.3312 REMARK 3 T33: 0.5394 T12: -0.3453 REMARK 3 T13: 0.0347 T23: -0.0745 REMARK 3 L TENSOR REMARK 3 L11: 3.4019 L22: 6.0458 REMARK 3 L33: 8.0642 L12: 0.2316 REMARK 3 L13: -1.3054 L23: -1.2052 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: -0.9324 S13: -0.0704 REMARK 3 S21: -0.0326 S22: -0.2290 S23: -0.2426 REMARK 3 S31: -0.6553 S32: 1.9258 S33: 0.1786 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 170 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.2960 -1.1398 109.1508 REMARK 3 T TENSOR REMARK 3 T11: 1.2909 T22: 2.1131 REMARK 3 T33: 0.7567 T12: -0.5613 REMARK 3 T13: 0.0009 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 2.6325 L22: 5.8341 REMARK 3 L33: 2.5054 L12: 0.5964 REMARK 3 L13: 0.8728 L23: -1.4839 REMARK 3 S TENSOR REMARK 3 S11: 0.5914 S12: -0.9890 S13: 0.1132 REMARK 3 S21: 0.6179 S22: -0.2889 S23: -0.7722 REMARK 3 S31: -1.6053 S32: 2.4198 S33: -0.1750 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 191 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.6595 0.3539 115.4162 REMARK 3 T TENSOR REMARK 3 T11: 1.5353 T22: 2.4174 REMARK 3 T33: 0.9948 T12: -0.6558 REMARK 3 T13: 0.0009 T23: -0.3375 REMARK 3 L TENSOR REMARK 3 L11: 9.1761 L22: 3.9573 REMARK 3 L33: 4.0707 L12: 0.6766 REMARK 3 L13: 0.8242 L23: 0.4206 REMARK 3 S TENSOR REMARK 3 S11: 0.5435 S12: -0.9551 S13: 0.9155 REMARK 3 S21: 0.5037 S22: 0.3131 S23: -1.0303 REMARK 3 S31: -1.7890 S32: 2.1771 S33: -0.7708 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300034108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 20.3830 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : 0.24200 REMARK 200 FOR SHELL : 3.271 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1W8A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3000, 0.1M POTASSIUM/SODIUM REMARK 280 PHOSPHATE PH=6.2, 0.2M SODIUM CHLORIDE, PH 6.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.84700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 LYS A 39 REMARK 465 PRO A 40 REMARK 465 ILE A 222 REMARK 465 ILE A 223 REMARK 465 ALA A 224 REMARK 465 ALA A 225 REMARK 465 ALA A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS B 32 REMARK 465 HIS B 33 REMARK 465 HIS B 34 REMARK 465 HIS B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 HIS B 38 REMARK 465 LYS B 39 REMARK 465 PRO B 40 REMARK 465 ILE B 222 REMARK 465 ILE B 223 REMARK 465 ALA B 224 REMARK 465 ALA B 225 REMARK 465 ALA B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS C 32 REMARK 465 HIS C 33 REMARK 465 HIS C 34 REMARK 465 HIS C 35 REMARK 465 HIS C 36 REMARK 465 HIS C 37 REMARK 465 HIS C 38 REMARK 465 LYS C 39 REMARK 465 PRO C 40 REMARK 465 ILE C 222 REMARK 465 ILE C 223 REMARK 465 ALA C 224 REMARK 465 ALA C 225 REMARK 465 ALA C 226 REMARK 465 HIS C 227 REMARK 465 HIS C 228 REMARK 465 HIS C 229 REMARK 465 HIS C 230 REMARK 465 HIS C 231 REMARK 465 HIS C 232 REMARK 465 HIS C 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 220 -129.93 64.26 REMARK 500 LYS B 50 -70.65 -55.94 REMARK 500 THR B 90 66.42 -119.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 301 bound REMARK 800 to ASN A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG B 301 bound REMARK 800 to ASN B 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG C 301 bound REMARK 800 to ASN C 192 DBREF 8HPW A 39 223 UNP Q9JIA1 LGI1_MOUSE 39 223 DBREF 8HPW B 39 223 UNP Q9JIA1 LGI1_MOUSE 39 223 DBREF 8HPW C 39 223 UNP Q9JIA1 LGI1_MOUSE 39 223 SEQADV 8HPW HIS A 32 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 33 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 34 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 35 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 36 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 37 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 38 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA A 224 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA A 225 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA A 226 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 227 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 228 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 229 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 230 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 231 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 232 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS A 233 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 32 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 33 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 34 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 35 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 36 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 37 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 38 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA B 224 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA B 225 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA B 226 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 227 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 228 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 229 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 230 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 231 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 232 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS B 233 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 32 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 33 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 34 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 35 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 36 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 37 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 38 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA C 224 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA C 225 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW ALA C 226 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 227 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 228 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 229 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 230 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 231 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 232 UNP Q9JIA1 EXPRESSION TAG SEQADV 8HPW HIS C 233 UNP Q9JIA1 EXPRESSION TAG SEQRES 1 A 202 HIS HIS HIS HIS HIS HIS HIS LYS PRO LYS CYS PRO ALA SEQRES 2 A 202 VAL CYS THR CYS SER LYS ASP ASN ALA LEU CYS GLU ASN SEQRES 3 A 202 ALA ARG SER ILE PRO ARG THR VAL PRO PRO ASP VAL ILE SEQRES 4 A 202 SER LEU SER PHE VAL ARG SER GLY PHE THR GLU ILE SER SEQRES 5 A 202 GLU GLY SER PHE LEU PHE THR PRO SER LEU GLN LEU LEU SEQRES 6 A 202 LEU PHE THR SER ASN SER PHE ASP VAL ILE SER ASP ASP SEQRES 7 A 202 ALA PHE ILE GLY LEU PRO HIS LEU GLU TYR LEU PHE ILE SEQRES 8 A 202 GLU ASN ASN ASN ILE LYS SER ILE SER ARG HIS THR PHE SEQRES 9 A 202 ARG GLY LEU LYS SER LEU ILE HIS LEU SER LEU ALA ASN SEQRES 10 A 202 ASN ASN LEU GLN THR LEU PRO LYS ASP ILE PHE LYS GLY SEQRES 11 A 202 LEU ASP SER LEU THR ASN VAL ASP LEU ARG GLY ASN ALA SEQRES 12 A 202 PHE ASN CYS ASP CYS LYS LEU LYS TRP LEU VAL GLU TRP SEQRES 13 A 202 LEU GLY HIS THR ASN ALA THR VAL GLU ASP ILE TYR CYS SEQRES 14 A 202 GLU GLY PRO PRO GLU TYR LYS LYS ARG LYS ILE ASN SER SEQRES 15 A 202 LEU SER PRO LYS ASP PHE ASP CYS ILE ILE ALA ALA ALA SEQRES 16 A 202 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 202 HIS HIS HIS HIS HIS HIS HIS LYS PRO LYS CYS PRO ALA SEQRES 2 B 202 VAL CYS THR CYS SER LYS ASP ASN ALA LEU CYS GLU ASN SEQRES 3 B 202 ALA ARG SER ILE PRO ARG THR VAL PRO PRO ASP VAL ILE SEQRES 4 B 202 SER LEU SER PHE VAL ARG SER GLY PHE THR GLU ILE SER SEQRES 5 B 202 GLU GLY SER PHE LEU PHE THR PRO SER LEU GLN LEU LEU SEQRES 6 B 202 LEU PHE THR SER ASN SER PHE ASP VAL ILE SER ASP ASP SEQRES 7 B 202 ALA PHE ILE GLY LEU PRO HIS LEU GLU TYR LEU PHE ILE SEQRES 8 B 202 GLU ASN ASN ASN ILE LYS SER ILE SER ARG HIS THR PHE SEQRES 9 B 202 ARG GLY LEU LYS SER LEU ILE HIS LEU SER LEU ALA ASN SEQRES 10 B 202 ASN ASN LEU GLN THR LEU PRO LYS ASP ILE PHE LYS GLY SEQRES 11 B 202 LEU ASP SER LEU THR ASN VAL ASP LEU ARG GLY ASN ALA SEQRES 12 B 202 PHE ASN CYS ASP CYS LYS LEU LYS TRP LEU VAL GLU TRP SEQRES 13 B 202 LEU GLY HIS THR ASN ALA THR VAL GLU ASP ILE TYR CYS SEQRES 14 B 202 GLU GLY PRO PRO GLU TYR LYS LYS ARG LYS ILE ASN SER SEQRES 15 B 202 LEU SER PRO LYS ASP PHE ASP CYS ILE ILE ALA ALA ALA SEQRES 16 B 202 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 202 HIS HIS HIS HIS HIS HIS HIS LYS PRO LYS CYS PRO ALA SEQRES 2 C 202 VAL CYS THR CYS SER LYS ASP ASN ALA LEU CYS GLU ASN SEQRES 3 C 202 ALA ARG SER ILE PRO ARG THR VAL PRO PRO ASP VAL ILE SEQRES 4 C 202 SER LEU SER PHE VAL ARG SER GLY PHE THR GLU ILE SER SEQRES 5 C 202 GLU GLY SER PHE LEU PHE THR PRO SER LEU GLN LEU LEU SEQRES 6 C 202 LEU PHE THR SER ASN SER PHE ASP VAL ILE SER ASP ASP SEQRES 7 C 202 ALA PHE ILE GLY LEU PRO HIS LEU GLU TYR LEU PHE ILE SEQRES 8 C 202 GLU ASN ASN ASN ILE LYS SER ILE SER ARG HIS THR PHE SEQRES 9 C 202 ARG GLY LEU LYS SER LEU ILE HIS LEU SER LEU ALA ASN SEQRES 10 C 202 ASN ASN LEU GLN THR LEU PRO LYS ASP ILE PHE LYS GLY SEQRES 11 C 202 LEU ASP SER LEU THR ASN VAL ASP LEU ARG GLY ASN ALA SEQRES 12 C 202 PHE ASN CYS ASP CYS LYS LEU LYS TRP LEU VAL GLU TRP SEQRES 13 C 202 LEU GLY HIS THR ASN ALA THR VAL GLU ASP ILE TYR CYS SEQRES 14 C 202 GLU GLY PRO PRO GLU TYR LYS LYS ARG LYS ILE ASN SER SEQRES 15 C 202 LEU SER PRO LYS ASP PHE ASP CYS ILE ILE ALA ALA ALA SEQRES 16 C 202 HIS HIS HIS HIS HIS HIS HIS HET NAG A 301 14 HET NAG B 301 14 HET NAG C 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 7 HOH *124(H2 O) HELIX 1 AA1 ASP A 178 LYS A 180 5 3 HELIX 2 AA2 LEU A 181 THR A 191 1 11 HELIX 3 AA3 SER A 215 ASP A 220 5 6 HELIX 4 AA4 ASP B 178 THR B 191 1 14 HELIX 5 AA5 ASP C 178 LYS C 180 5 3 HELIX 6 AA6 LEU C 181 THR C 191 1 11 HELIX 7 AA7 SER C 215 PHE C 219 5 5 SHEET 1 AA1 8 CYS A 46 CYS A 48 0 SHEET 2 AA1 8 ASN A 52 GLU A 56 -1 O LEU A 54 N THR A 47 SHEET 3 AA1 8 SER A 71 VAL A 75 1 O SER A 73 N CYS A 55 SHEET 4 AA1 8 LEU A 95 THR A 99 1 O LEU A 97 N PHE A 74 SHEET 5 AA1 8 TYR A 119 GLU A 123 1 O PHE A 121 N LEU A 96 SHEET 6 AA1 8 HIS A 143 SER A 145 1 O SER A 145 N ILE A 122 SHEET 7 AA1 8 ASN A 167 ASP A 169 1 O ASN A 167 N LEU A 144 SHEET 8 AA1 8 THR A 194 VAL A 195 1 O THR A 194 N VAL A 168 SHEET 1 AA2 3 GLU A 81 ILE A 82 0 SHEET 2 AA2 3 SER A 102 ILE A 106 1 O VAL A 105 N ILE A 82 SHEET 3 AA2 3 ASN A 126 ILE A 130 1 O ASN A 126 N PHE A 103 SHEET 1 AA3 2 PHE A 175 ASN A 176 0 SHEET 2 AA3 2 CYS A 200 GLY A 202 1 O GLU A 201 N PHE A 175 SHEET 1 AA4 8 CYS B 46 CYS B 48 0 SHEET 2 AA4 8 ASN B 52 GLU B 56 -1 O LEU B 54 N THR B 47 SHEET 3 AA4 8 SER B 71 VAL B 75 1 O SER B 73 N CYS B 55 SHEET 4 AA4 8 LEU B 95 THR B 99 1 O LEU B 97 N PHE B 74 SHEET 5 AA4 8 TYR B 119 GLU B 123 1 O PHE B 121 N LEU B 96 SHEET 6 AA4 8 HIS B 143 SER B 145 1 O SER B 145 N ILE B 122 SHEET 7 AA4 8 ASN B 167 ASP B 169 1 O ASN B 167 N LEU B 144 SHEET 8 AA4 8 THR B 194 VAL B 195 1 O THR B 194 N VAL B 168 SHEET 1 AA5 3 GLU B 81 ILE B 82 0 SHEET 2 AA5 3 SER B 102 ILE B 106 1 O VAL B 105 N ILE B 82 SHEET 3 AA5 3 ASN B 126 ILE B 130 1 O ASN B 126 N PHE B 103 SHEET 1 AA6 2 PHE B 175 ASN B 176 0 SHEET 2 AA6 2 CYS B 200 GLY B 202 1 O GLY B 202 N PHE B 175 SHEET 1 AA7 8 CYS C 46 CYS C 48 0 SHEET 2 AA7 8 ASN C 52 GLU C 56 -1 O LEU C 54 N THR C 47 SHEET 3 AA7 8 SER C 71 VAL C 75 1 O SER C 73 N CYS C 55 SHEET 4 AA7 8 LEU C 95 THR C 99 1 O LEU C 97 N PHE C 74 SHEET 5 AA7 8 TYR C 119 GLU C 123 1 O PHE C 121 N PHE C 98 SHEET 6 AA7 8 HIS C 143 SER C 145 1 O SER C 145 N ILE C 122 SHEET 7 AA7 8 ASN C 167 ASP C 169 1 O ASP C 169 N LEU C 144 SHEET 8 AA7 8 THR C 194 VAL C 195 1 O THR C 194 N VAL C 168 SHEET 1 AA8 2 SER C 102 PHE C 103 0 SHEET 2 AA8 2 ASN C 126 ILE C 127 1 O ASN C 126 N PHE C 103 SSBOND 1 CYS A 42 CYS A 48 1555 1555 2.04 SSBOND 2 CYS A 46 CYS A 55 1555 1555 2.03 SSBOND 3 CYS A 177 CYS A 200 1555 1555 2.04 SSBOND 4 CYS A 179 CYS A 221 1555 1555 2.03 SSBOND 5 CYS B 42 CYS B 48 1555 1555 2.04 SSBOND 6 CYS B 46 CYS B 55 1555 1555 2.03 SSBOND 7 CYS B 177 CYS B 200 1555 1555 2.03 SSBOND 8 CYS B 179 CYS B 221 1555 1555 2.03 SSBOND 9 CYS C 42 CYS C 48 1555 1555 2.03 SSBOND 10 CYS C 46 CYS C 55 1555 1555 2.03 SSBOND 11 CYS C 177 CYS C 200 1555 1555 2.03 SSBOND 12 CYS C 179 CYS C 221 1555 1555 2.03 LINK ND2 ASN A 192 C1 NAG A 301 1555 1555 1.45 LINK ND2 ASN B 192 C1 NAG B 301 1555 1555 1.44 LINK ND2 ASN C 192 C1 NAG C 301 1555 1555 1.45 CISPEP 1 GLY A 202 PRO A 203 0 -0.68 CISPEP 2 GLY B 202 PRO B 203 0 -0.33 CISPEP 3 GLY C 202 PRO C 203 0 -1.70 SITE 1 AC1 2 HIS A 190 ASN A 192 SITE 1 AC2 1 ASN B 192 SITE 1 AC3 1 ASN C 192 CRYST1 54.158 101.694 65.848 90.00 91.70 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018464 0.000000 0.000547 0.00000 SCALE2 0.000000 0.009833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015193 0.00000