HEADER PLANT PROTEIN 13-DEC-22 8HQB TITLE NMR STRUCTURE OF OSCIE1-UBOX COMPND MOL_ID: 1; COMPND 2 MOLECULE: U-BOX DOMAIN-CONTAINING PROTEIN 12; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PLANT U-BOX PROTEIN 12,OSPUB12,RING-TYPE E3 UBIQUITIN COMPND 5 TRANSFERASE PUB12; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: PUB12, OS06G0102700, LOC_OS06G01304, OSJNBA0075G19.19-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITINATION, UBOX, LIGASE, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.ZHANG,C.Z.YU,W.X.LAN REVDAT 5 12-JUN-24 8HQB 1 JRNL REVDAT 4 29-MAY-24 8HQB 1 JRNL REVDAT 3 22-MAY-24 8HQB 1 JRNL REVDAT 2 08-MAY-24 8HQB 1 REMARK REVDAT 1 20-DEC-23 8HQB 0 JRNL AUTH G.WANG,X.CHEN,C.YU,X.SHI,W.LAN,C.GAO,J.YANG,H.DAI,X.ZHANG, JRNL AUTH 2 H.ZHANG,B.ZHAO,Q.XIE,N.YU,Z.HE,Y.ZHANG,E.WANG JRNL TITL RELEASE OF A UBIQUITIN BRAKE ACTIVATES OSCERK1-TRIGGERED JRNL TITL 2 IMMUNITY IN RICE. JRNL REF NATURE V. 629 1158 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 38750355 JRNL DOI 10.1038/S41586-024-07418-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300034092. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 WT-UBOX, 10 MM TRIS, 100 MM REMARK 210 SODIUM CHLORIDE, 1 MM PMSF, 2 MM REMARK 210 DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DD2 REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, NMRDRAW, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 282 103.28 -48.21 REMARK 500 1 PRO A 283 -65.40 -94.81 REMARK 500 1 PHE A 285 -105.54 -165.01 REMARK 500 1 LEU B 238 35.14 71.27 REMARK 500 1 PHE B 285 -107.02 -169.17 REMARK 500 2 LEU A 238 15.02 59.36 REMARK 500 2 GLN A 273 42.16 76.13 REMARK 500 2 SER A 277 12.22 -147.61 REMARK 500 2 SER A 280 16.87 -159.73 REMARK 500 2 LEU A 281 90.07 58.15 REMARK 500 2 PHE A 285 -85.82 -107.07 REMARK 500 2 THR B 279 -93.84 -67.61 REMARK 500 2 SER B 280 88.95 -174.16 REMARK 500 2 PHE B 285 -97.12 -113.27 REMARK 500 3 LYS A 267 15.19 -140.95 REMARK 500 3 PHE A 285 -105.41 -127.00 REMARK 500 3 LEU B 281 -171.58 -177.11 REMARK 500 3 THR B 282 99.35 43.55 REMARK 500 3 PHE B 285 -100.07 -124.23 REMARK 500 4 LEU A 238 26.57 48.85 REMARK 500 4 SER A 277 -93.48 50.34 REMARK 500 4 SER A 280 64.87 -168.61 REMARK 500 4 PHE A 285 -89.11 -119.21 REMARK 500 4 LEU B 238 35.76 75.48 REMARK 500 4 LYS B 267 18.10 -142.36 REMARK 500 4 PHE B 285 -78.14 -122.66 REMARK 500 5 LEU A 238 17.33 58.56 REMARK 500 5 LEU A 281 91.52 -64.77 REMARK 500 5 PHE A 285 -92.36 -121.42 REMARK 500 5 THR B 282 104.05 -46.81 REMARK 500 5 PRO B 283 -87.05 -87.83 REMARK 500 5 PHE B 285 -89.08 -153.99 REMARK 500 6 GLN A 273 46.54 74.73 REMARK 500 6 PHE A 285 -88.96 -112.64 REMARK 500 6 LYS B 267 20.68 -157.43 REMARK 500 6 PHE B 285 -96.15 -123.84 REMARK 500 7 GLN A 273 43.64 75.69 REMARK 500 7 PHE A 285 -96.92 -112.36 REMARK 500 7 PHE B 285 -95.33 -118.79 REMARK 500 8 SER A 237 -81.05 -101.58 REMARK 500 8 LEU A 238 -28.78 157.76 REMARK 500 8 SER A 277 -46.35 -134.89 REMARK 500 8 ASN A 284 120.97 -38.26 REMARK 500 8 PHE A 285 -96.10 -110.31 REMARK 500 8 LEU B 238 17.65 56.49 REMARK 500 8 GLN B 273 47.40 72.56 REMARK 500 8 THR B 282 88.34 -153.74 REMARK 500 8 PRO B 283 -72.42 -75.36 REMARK 500 8 PHE B 285 -91.54 -160.39 REMARK 500 9 LEU A 238 16.68 59.08 REMARK 500 REMARK 500 THIS ENTRY HAS 132 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7XED RELATED DB: PDB REMARK 900 RELATED ID: 36527 RELATED DB: BMRB REMARK 900 RELATED ID: 36528 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF OSCIE1-UBOX DBREF 8HQB A 227 303 UNP Q5VRH9 PUB12_ORYSJ 227 303 DBREF 8HQB B 227 303 UNP Q5VRH9 PUB12_ORYSJ 227 303 SEQADV 8HQB GLY A 224 UNP Q5VRH9 EXPRESSION TAG SEQADV 8HQB ALA A 225 UNP Q5VRH9 EXPRESSION TAG SEQADV 8HQB MET A 226 UNP Q5VRH9 EXPRESSION TAG SEQADV 8HQB GLY B 224 UNP Q5VRH9 EXPRESSION TAG SEQADV 8HQB ALA B 225 UNP Q5VRH9 EXPRESSION TAG SEQADV 8HQB MET B 226 UNP Q5VRH9 EXPRESSION TAG SEQRES 1 A 80 GLY ALA MET ILE ILE PRO ASP GLU PHE ARG CYS PRO ILE SEQRES 2 A 80 SER LEU GLU LEU MET GLN ASP PRO VAL ILE VAL SER SER SEQRES 3 A 80 GLY GLN THR TYR GLU ARG SER CYS ILE GLN LYS TRP LEU SEQRES 4 A 80 ASP SER GLY HIS LYS THR CYS PRO LYS THR GLN GLN PRO SEQRES 5 A 80 LEU SER HIS THR SER LEU THR PRO ASN PHE VAL LEU LYS SEQRES 6 A 80 SER LEU ILE SER GLN TRP CYS GLU ALA ASN GLY ILE GLU SEQRES 7 A 80 LEU PRO SEQRES 1 B 80 GLY ALA MET ILE ILE PRO ASP GLU PHE ARG CYS PRO ILE SEQRES 2 B 80 SER LEU GLU LEU MET GLN ASP PRO VAL ILE VAL SER SER SEQRES 3 B 80 GLY GLN THR TYR GLU ARG SER CYS ILE GLN LYS TRP LEU SEQRES 4 B 80 ASP SER GLY HIS LYS THR CYS PRO LYS THR GLN GLN PRO SEQRES 5 B 80 LEU SER HIS THR SER LEU THR PRO ASN PHE VAL LEU LYS SEQRES 6 B 80 SER LEU ILE SER GLN TRP CYS GLU ALA ASN GLY ILE GLU SEQRES 7 B 80 LEU PRO HELIX 1 AA1 PRO A 229 ARG A 233 5 5 HELIX 2 AA2 ARG A 255 GLY A 265 1 11 HELIX 3 AA3 PHE A 285 GLY A 299 1 15 HELIX 4 AA4 ARG B 255 GLY B 265 1 11 HELIX 5 AA5 PHE B 285 GLY B 299 1 15 SHEET 1 AA1 2 PRO A 244 ILE A 246 0 SHEET 2 AA1 2 THR A 252 GLU A 254 -1 O TYR A 253 N VAL A 245 SHEET 1 AA2 2 THR A 268 CYS A 269 0 SHEET 2 AA2 2 GLN A 274 PRO A 275 -1 O GLN A 274 N CYS A 269 SHEET 1 AA3 2 PRO B 244 ILE B 246 0 SHEET 2 AA3 2 THR B 252 GLU B 254 -1 O TYR B 253 N VAL B 245 SHEET 1 AA4 2 THR B 268 CYS B 269 0 SHEET 2 AA4 2 GLN B 274 PRO B 275 -1 O GLN B 274 N CYS B 269 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1