HEADER PROTEIN TRANSPORT 13-DEC-22 8HQL TITLE CRYSTAL STRUCTURE OF MOUSE SNX25 PX DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-25; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SNX25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PX DOMAIN, SORTING NEXINS, SNX25, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Z.YU,J.XU,J.LIU REVDAT 1 20-DEC-23 8HQL 0 JRNL AUTH Z.YU,J.XU,J.LIU JRNL TITL CRYSTAL STRUCTURE OF MOUSE SNX25 PX DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2319 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3132 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4851 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 224 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5135 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5040 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6844 ; 1.877 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11617 ; 1.376 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 6.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;37.732 ;22.463 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 916 ;18.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;24.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5552 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1186 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2399 ; 7.019 ; 5.355 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2396 ; 7.020 ; 5.350 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2984 ; 9.768 ; 8.008 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2985 ; 9.767 ; 8.010 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2736 ; 7.960 ; 6.173 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2737 ; 7.959 ; 6.173 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3861 ;10.934 ; 8.846 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5393 ;13.653 ;60.976 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5394 ;13.652 ;60.990 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 10 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 3545 0.12 0.05 REMARK 3 2 A C 3650 0.13 0.05 REMARK 3 3 A D 3583 0.11 0.05 REMARK 3 4 A E 3652 0.11 0.05 REMARK 3 5 B C 3521 0.12 0.05 REMARK 3 6 B D 3670 0.09 0.05 REMARK 3 7 B E 3549 0.12 0.05 REMARK 3 8 C D 3553 0.12 0.05 REMARK 3 9 C E 3629 0.12 0.05 REMARK 3 10 D E 3601 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8HQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 20-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300034109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46187 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M MAGNESIUM SULFATE HYDRATE, 0.1 M REMARK 280 SODIUM ACETATE TRIHYDRATE PH 4.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.84033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 299.68067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 224.76050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 374.60083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.92017 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 149.84033 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 299.68067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 374.60083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 224.76050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 74.92017 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -74.92017 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -92.68000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -46.34000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 80.26323 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -74.92017 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -74.92017 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL D 706 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 627 REMARK 465 HIS A 628 REMARK 465 HIS A 629 REMARK 465 HIS A 630 REMARK 465 HIS A 631 REMARK 465 HIS A 632 REMARK 465 SER B 579 REMARK 465 LYS B 580 REMARK 465 LEU B 581 REMARK 465 GLU B 626 REMARK 465 HIS B 627 REMARK 465 HIS B 628 REMARK 465 HIS B 629 REMARK 465 HIS B 630 REMARK 465 HIS B 631 REMARK 465 HIS B 632 REMARK 465 HIS C 627 REMARK 465 HIS C 628 REMARK 465 HIS C 629 REMARK 465 HIS C 630 REMARK 465 HIS C 631 REMARK 465 HIS C 632 REMARK 465 LYS D 580 REMARK 465 LEU D 581 REMARK 465 PRO D 582 REMARK 465 GLU D 626 REMARK 465 HIS D 627 REMARK 465 HIS D 628 REMARK 465 HIS D 629 REMARK 465 HIS D 630 REMARK 465 HIS D 631 REMARK 465 HIS D 632 REMARK 465 GLU E 626 REMARK 465 HIS E 627 REMARK 465 HIS E 628 REMARK 465 HIS E 629 REMARK 465 HIS E 630 REMARK 465 HIS E 631 REMARK 465 HIS E 632 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 518 CD GLU C 518 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 595 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 PHE E 583 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 523 -117.61 47.26 REMARK 500 LYS A 584 53.68 -110.39 REMARK 500 SER A 614 109.26 -56.95 REMARK 500 ASN B 523 -116.79 45.70 REMARK 500 PHE B 583 -140.08 65.29 REMARK 500 LYS B 584 48.34 -104.15 REMARK 500 SER B 614 107.84 -59.98 REMARK 500 ASN C 523 -109.59 86.34 REMARK 500 SER C 614 109.95 -57.92 REMARK 500 LEU C 625 -111.47 -118.74 REMARK 500 ASN D 523 -118.59 48.19 REMARK 500 ASN E 523 -122.53 49.64 REMARK 500 LYS E 580 -27.71 86.23 REMARK 500 LYS E 584 53.14 -101.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 701 REMARK 610 1PE A 702 REMARK 610 1PE A 703 REMARK 610 1PE A 704 REMARK 610 1PE B 701 REMARK 610 1PE B 702 REMARK 610 1PE B 703 REMARK 610 1PE B 704 REMARK 610 1PE B 705 REMARK 610 1PE B 706 REMARK 610 1PE C 701 REMARK 610 1PE D 701 REMARK 610 1PE D 702 REMARK 610 1PE D 703 REMARK 610 1PE D 704 REMARK 610 1PE E 701 REMARK 610 1PE E 702 DBREF 8HQL A 506 624 UNP Q3ZT31 SNX25_MOUSE 506 624 DBREF 8HQL B 506 624 UNP Q3ZT31 SNX25_MOUSE 506 624 DBREF 8HQL C 506 624 UNP Q3ZT31 SNX25_MOUSE 506 624 DBREF 8HQL D 506 624 UNP Q3ZT31 SNX25_MOUSE 506 624 DBREF 8HQL E 506 624 UNP Q3ZT31 SNX25_MOUSE 506 624 SEQADV 8HQL MET A 505 UNP Q3ZT31 INITIATING METHIONINE SEQADV 8HQL LEU A 625 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL GLU A 626 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS A 627 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS A 628 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS A 629 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS A 630 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS A 631 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS A 632 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL MET B 505 UNP Q3ZT31 INITIATING METHIONINE SEQADV 8HQL LEU B 625 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL GLU B 626 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS B 627 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS B 628 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS B 629 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS B 630 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS B 631 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS B 632 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL MET C 505 UNP Q3ZT31 INITIATING METHIONINE SEQADV 8HQL LEU C 625 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL GLU C 626 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS C 627 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS C 628 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS C 629 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS C 630 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS C 631 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS C 632 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL MET D 505 UNP Q3ZT31 INITIATING METHIONINE SEQADV 8HQL LEU D 625 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL GLU D 626 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS D 627 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS D 628 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS D 629 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS D 630 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS D 631 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS D 632 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL MET E 505 UNP Q3ZT31 INITIATING METHIONINE SEQADV 8HQL LEU E 625 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL GLU E 626 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS E 627 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS E 628 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS E 629 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS E 630 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS E 631 UNP Q3ZT31 EXPRESSION TAG SEQADV 8HQL HIS E 632 UNP Q3ZT31 EXPRESSION TAG SEQRES 1 A 128 MET ASN LEU GLY LEU TRP ARG ALA SER ILE THR SER ALA SEQRES 2 A 128 GLU VAL THR GLU GLU ASN GLY GLU GLN MET PRO CYS TYR SEQRES 3 A 128 PHE VAL ARG VAL ASN LEU GLN GLU VAL GLY GLY VAL GLU SEQRES 4 A 128 THR LYS ASN TRP THR VAL PRO ARG ARG LEU SER GLU PHE SEQRES 5 A 128 GLN ASN LEU HIS ARG LYS LEU SER GLU CYS VAL PRO SER SEQRES 6 A 128 LEU LYS LYS VAL GLN LEU PRO SER LEU SER LYS LEU PRO SEQRES 7 A 128 PHE LYS SER ILE ASP HIS LYS PHE LEU GLY LYS SER ARG SEQRES 8 A 128 ASN GLN LEU ASN ALA PHE LEU GLN ASN LEU LEU SER ASP SEQRES 9 A 128 GLU ARG LEU PHE GLN SER GLU ALA LEU TYR ALA PHE LEU SEQRES 10 A 128 SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 128 MET ASN LEU GLY LEU TRP ARG ALA SER ILE THR SER ALA SEQRES 2 B 128 GLU VAL THR GLU GLU ASN GLY GLU GLN MET PRO CYS TYR SEQRES 3 B 128 PHE VAL ARG VAL ASN LEU GLN GLU VAL GLY GLY VAL GLU SEQRES 4 B 128 THR LYS ASN TRP THR VAL PRO ARG ARG LEU SER GLU PHE SEQRES 5 B 128 GLN ASN LEU HIS ARG LYS LEU SER GLU CYS VAL PRO SER SEQRES 6 B 128 LEU LYS LYS VAL GLN LEU PRO SER LEU SER LYS LEU PRO SEQRES 7 B 128 PHE LYS SER ILE ASP HIS LYS PHE LEU GLY LYS SER ARG SEQRES 8 B 128 ASN GLN LEU ASN ALA PHE LEU GLN ASN LEU LEU SER ASP SEQRES 9 B 128 GLU ARG LEU PHE GLN SER GLU ALA LEU TYR ALA PHE LEU SEQRES 10 B 128 SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 128 MET ASN LEU GLY LEU TRP ARG ALA SER ILE THR SER ALA SEQRES 2 C 128 GLU VAL THR GLU GLU ASN GLY GLU GLN MET PRO CYS TYR SEQRES 3 C 128 PHE VAL ARG VAL ASN LEU GLN GLU VAL GLY GLY VAL GLU SEQRES 4 C 128 THR LYS ASN TRP THR VAL PRO ARG ARG LEU SER GLU PHE SEQRES 5 C 128 GLN ASN LEU HIS ARG LYS LEU SER GLU CYS VAL PRO SER SEQRES 6 C 128 LEU LYS LYS VAL GLN LEU PRO SER LEU SER LYS LEU PRO SEQRES 7 C 128 PHE LYS SER ILE ASP HIS LYS PHE LEU GLY LYS SER ARG SEQRES 8 C 128 ASN GLN LEU ASN ALA PHE LEU GLN ASN LEU LEU SER ASP SEQRES 9 C 128 GLU ARG LEU PHE GLN SER GLU ALA LEU TYR ALA PHE LEU SEQRES 10 C 128 SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 128 MET ASN LEU GLY LEU TRP ARG ALA SER ILE THR SER ALA SEQRES 2 D 128 GLU VAL THR GLU GLU ASN GLY GLU GLN MET PRO CYS TYR SEQRES 3 D 128 PHE VAL ARG VAL ASN LEU GLN GLU VAL GLY GLY VAL GLU SEQRES 4 D 128 THR LYS ASN TRP THR VAL PRO ARG ARG LEU SER GLU PHE SEQRES 5 D 128 GLN ASN LEU HIS ARG LYS LEU SER GLU CYS VAL PRO SER SEQRES 6 D 128 LEU LYS LYS VAL GLN LEU PRO SER LEU SER LYS LEU PRO SEQRES 7 D 128 PHE LYS SER ILE ASP HIS LYS PHE LEU GLY LYS SER ARG SEQRES 8 D 128 ASN GLN LEU ASN ALA PHE LEU GLN ASN LEU LEU SER ASP SEQRES 9 D 128 GLU ARG LEU PHE GLN SER GLU ALA LEU TYR ALA PHE LEU SEQRES 10 D 128 SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 128 MET ASN LEU GLY LEU TRP ARG ALA SER ILE THR SER ALA SEQRES 2 E 128 GLU VAL THR GLU GLU ASN GLY GLU GLN MET PRO CYS TYR SEQRES 3 E 128 PHE VAL ARG VAL ASN LEU GLN GLU VAL GLY GLY VAL GLU SEQRES 4 E 128 THR LYS ASN TRP THR VAL PRO ARG ARG LEU SER GLU PHE SEQRES 5 E 128 GLN ASN LEU HIS ARG LYS LEU SER GLU CYS VAL PRO SER SEQRES 6 E 128 LEU LYS LYS VAL GLN LEU PRO SER LEU SER LYS LEU PRO SEQRES 7 E 128 PHE LYS SER ILE ASP HIS LYS PHE LEU GLY LYS SER ARG SEQRES 8 E 128 ASN GLN LEU ASN ALA PHE LEU GLN ASN LEU LEU SER ASP SEQRES 9 E 128 GLU ARG LEU PHE GLN SER GLU ALA LEU TYR ALA PHE LEU SEQRES 10 E 128 SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS HET 1PE A 701 10 HET 1PE A 702 4 HET 1PE A 703 13 HET 1PE A 704 4 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HET GOL A 709 6 HET CL A 710 1 HET 1PE B 701 13 HET 1PE B 702 10 HET 1PE B 703 10 HET 1PE B 704 4 HET 1PE B 705 4 HET 1PE B 706 4 HET CL B 707 1 HET 1PE C 701 9 HET GOL C 702 6 HET GOL C 703 6 HET GOL C 704 6 HET GOL C 705 6 HET GOL C 706 6 HET CL C 707 1 HET ACY C 708 4 HET 1PE D 701 7 HET 1PE D 702 7 HET 1PE D 703 4 HET 1PE D 704 10 HET GOL D 705 6 HET CL D 706 1 HET ACY D 707 4 HET 1PE E 701 10 HET 1PE E 702 4 HET GOL E 703 6 HET GOL E 704 6 HET GOL E 705 6 HET CL E 706 1 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM ACY ACETIC ACID HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 1PE 17(C10 H22 O6) FORMUL 10 GOL 14(C3 H8 O3) FORMUL 15 CL 5(CL 1-) FORMUL 30 ACY 2(C2 H4 O2) FORMUL 44 HOH *134(H2 O) HELIX 1 AA1 ASN A 506 TRP A 510 5 5 HELIX 2 AA2 LEU A 553 VAL A 567 1 15 HELIX 3 AA3 PRO A 568 VAL A 573 5 6 HELIX 4 AA4 ASP A 587 SER A 607 1 21 HELIX 5 AA5 ASP A 608 PHE A 612 5 5 HELIX 6 AA6 SER A 614 SER A 622 1 9 HELIX 7 AA7 ASN B 506 TRP B 510 5 5 HELIX 8 AA8 LEU B 553 VAL B 567 1 15 HELIX 9 AA9 PRO B 568 VAL B 573 5 6 HELIX 10 AB1 ASP B 587 SER B 607 1 21 HELIX 11 AB2 ASP B 608 PHE B 612 5 5 HELIX 12 AB3 SER B 614 SER B 622 1 9 HELIX 13 AB4 ASN C 506 TRP C 510 5 5 HELIX 14 AB5 LEU C 553 VAL C 567 1 15 HELIX 15 AB6 PRO C 568 VAL C 573 5 6 HELIX 16 AB7 LYS C 580 LYS C 584 5 5 HELIX 17 AB8 ASP C 587 SER C 607 1 21 HELIX 18 AB9 ASP C 608 PHE C 612 5 5 HELIX 19 AC1 SER C 614 SER C 622 1 9 HELIX 20 AC2 ASN D 506 TRP D 510 5 5 HELIX 21 AC3 LEU D 553 VAL D 567 1 15 HELIX 22 AC4 PRO D 568 VAL D 573 5 6 HELIX 23 AC5 ASP D 587 SER D 607 1 21 HELIX 24 AC6 ASP D 608 PHE D 612 5 5 HELIX 25 AC7 SER D 614 SER D 622 1 9 HELIX 26 AC8 ASN E 506 TRP E 510 5 5 HELIX 27 AC9 LEU E 553 VAL E 567 1 15 HELIX 28 AD1 PRO E 568 VAL E 573 5 6 HELIX 29 AD2 ASP E 587 SER E 607 1 21 HELIX 30 AD3 ASP E 608 PHE E 612 5 5 HELIX 31 AD4 SER E 614 SER E 622 1 9 SHEET 1 AA1 3 ARG A 511 GLU A 522 0 SHEET 2 AA1 3 GLU A 525 ASN A 535 -1 O ARG A 533 N SER A 513 SHEET 3 AA1 3 ASN A 546 ARG A 552 -1 O ARG A 551 N TYR A 530 SHEET 1 AA2 3 ARG B 511 GLU B 522 0 SHEET 2 AA2 3 GLU B 525 ASN B 535 -1 O ARG B 533 N SER B 513 SHEET 3 AA2 3 ASN B 546 ARG B 552 -1 O VAL B 549 N VAL B 532 SHEET 1 AA3 3 ARG C 511 GLU C 522 0 SHEET 2 AA3 3 GLU C 525 ASN C 535 -1 O ARG C 533 N SER C 513 SHEET 3 AA3 3 ASN C 546 ARG C 552 -1 O ARG C 551 N TYR C 530 SHEET 1 AA4 3 ARG D 511 GLU D 522 0 SHEET 2 AA4 3 GLU D 525 ASN D 535 -1 O ARG D 533 N SER D 513 SHEET 3 AA4 3 ASN D 546 ARG D 552 -1 O ARG D 551 N TYR D 530 SHEET 1 AA5 3 ARG E 511 GLU E 522 0 SHEET 2 AA5 3 GLU E 525 ASN E 535 -1 O ARG E 533 N SER E 513 SHEET 3 AA5 3 ASN E 546 ARG E 552 -1 O ARG E 551 N TYR E 530 SSBOND 1 CYS B 566 CYS D 566 1555 1555 2.03 CRYST1 92.680 92.680 449.521 90.00 90.00 120.00 P 61 2 2 60 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010790 0.006230 0.000000 0.00000 SCALE2 0.000000 0.012459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002225 0.00000