data_8HR3 # _entry.id 8HR3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8HR3 pdb_00008hr3 10.2210/pdb8hr3/pdb WWPDB D_1300034167 ? ? BMRB 36529 ? 10.13018/BMR36529 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-09-20 2 'Structure model' 1 1 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_entry_details 3 2 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8HR3 _pdbx_database_status.recvd_initial_deposition_date 2022-12-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details '[D-Cys5,Asp7,Val8,D-Lys16]-STp(5-17)' _pdbx_database_related.db_id 36529 _pdbx_database_related.content_type unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 sh1nya.4sh1no@gmail.com Shinya Yoshino ? 'principal investigator/group leader' 0000-0002-5923-4464 4 tf.rongu.800@gmail.com Masaya Goto ? 'principal investigator/group leader' 0000-0001-7999-130X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shimamoto, S.' 1 0000-0002-9470-0352 'Hidaka, Y.' 2 0000-0002-3131-2619 'Yoshino, S.' 3 ? 'Goto, M.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Molecules _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1420-3049 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The Molecular Basis of Heat-Stable Enterotoxin for Vaccine Development and Cancer Cell Detection.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/molecules28031128 _citation.pdbx_database_id_PubMed 36770798 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goto, M.' 1 ? primary 'Yoshino, S.' 2 0000-0002-5923-4464 primary 'Hiroshima, K.' 3 ? primary 'Kawakami, T.' 4 0000-0001-6439-7623 primary 'Murota, K.' 5 ? primary 'Shimamoto, S.' 6 0000-0002-9470-0352 primary 'Hidaka, Y.' 7 0000-0002-3131-2619 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description DCY-CYS-ASP-VAL-CYS-CYS-ASN-PRO-ALA-CYS-ALA-DLY-CYS _entity.formula_weight 1332.637 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DCY)CDVCCNPACA(DLY)C' _entity_poly.pdbx_seq_one_letter_code_can CCDVCCNPACAKC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DCY n 1 2 CYS n 1 3 ASP n 1 4 VAL n 1 5 CYS n 1 6 CYS n 1 7 ASN n 1 8 PRO n 1 9 ALA n 1 10 CYS n 1 11 ALA n 1 12 DLY n 1 13 CYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DCY 'D-peptide linking' . D-CYSTEINE ? 'C3 H7 N O2 S' 121.158 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DCY 1 5 5 DCY DCY A . n A 1 2 CYS 2 6 6 CYS CYS A . n A 1 3 ASP 3 7 7 ASP ASP A . n A 1 4 VAL 4 8 8 VAL VAL A . n A 1 5 CYS 5 9 9 CYS CYS A . n A 1 6 CYS 6 10 10 CYS CYS A . n A 1 7 ASN 7 11 11 ASN ASN A . n A 1 8 PRO 8 12 12 PRO PRO A . n A 1 9 ALA 9 13 13 ALA ALA A . n A 1 10 CYS 10 14 14 CYS CYS A . n A 1 11 ALA 11 15 15 ALA ALA A . n A 1 12 DLY 12 16 16 DLY DLY A . n A 1 13 CYS 13 17 17 CYS CYS A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id DLY _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id DLY _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8HR3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8HR3 _struct.title '[D-Cys5,Asp7,Val8,D-Lys16]-STp(5-17)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8HR3 _struct_keywords.text 'Heat-stable enterotoxin, D-amino acid, topological isomer, STp, STp(5-17), TOXIN' _struct_keywords.pdbx_keywords TOXIN # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8HR3 _struct_ref.pdbx_db_accession 8HR3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8HR3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8HR3 _struct_ref_seq.db_align_beg 5 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'NMR Distance Restraints' ? 2 1 'mass spectrometry' ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A DCY 1 SG ? ? ? 1_555 A CYS 6 SG ? ? A DCY 5 A CYS 10 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 10 SG ? ? A CYS 6 A CYS 14 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 13 SG ? ? A CYS 9 A CYS 17 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale both ? A DCY 1 C ? ? ? 1_555 A CYS 2 N ? ? A DCY 5 A CYS 6 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A ALA 11 C ? ? ? 1_555 A DLY 12 N ? ? A ALA 15 A DLY 16 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A DLY 12 C ? ? ? 1_555 A CYS 13 N ? ? A DLY 16 A CYS 17 1_555 ? ? ? ? ? ? ? 1.337 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 DCY A 1 ? CYS A 6 ? DCY A 5 ? 1_555 CYS A 10 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 2 ? CYS A 10 ? CYS A 6 ? 1_555 CYS A 14 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 5 ? CYS A 13 ? CYS A 9 ? 1_555 CYS A 17 ? 1_555 SG SG . . . None 'Disulfide bridge' # _pdbx_entry_details.entry_id 8HR3 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details 'The side chain of DLY(D-Lys)16 were protonated.' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 7 ? ? -137.36 -48.56 2 1 VAL A 8 ? ? -147.67 -45.26 3 1 CYS A 14 ? ? 62.29 95.97 4 2 ASP A 7 ? ? -136.76 -48.77 5 2 VAL A 8 ? ? -145.52 -46.05 6 2 CYS A 14 ? ? 62.18 95.23 7 3 ASP A 7 ? ? -135.15 -50.61 8 3 VAL A 8 ? ? -147.51 -45.37 9 3 CYS A 14 ? ? 61.20 93.90 10 4 ASP A 7 ? ? -137.33 -48.40 11 4 VAL A 8 ? ? -144.44 -46.56 12 4 CYS A 14 ? ? 62.22 94.59 13 5 ASP A 7 ? ? -136.27 -49.43 14 5 VAL A 8 ? ? -148.06 -44.88 15 5 CYS A 14 ? ? 62.12 95.17 16 6 ASP A 7 ? ? -136.96 -48.74 17 6 VAL A 8 ? ? -147.76 -45.23 18 6 CYS A 14 ? ? 62.26 95.69 19 7 ASP A 7 ? ? -135.59 -49.54 20 7 VAL A 8 ? ? -146.40 -45.53 21 7 CYS A 14 ? ? 61.99 93.89 22 8 ASP A 7 ? ? -136.40 -50.54 23 8 VAL A 8 ? ? -149.48 -45.02 24 8 CYS A 14 ? ? 62.10 94.82 25 9 ASP A 7 ? ? -135.67 -50.06 26 9 VAL A 8 ? ? -148.40 -44.68 27 9 CYS A 14 ? ? 61.82 94.57 28 10 ASP A 7 ? ? -136.18 -50.35 29 10 VAL A 8 ? ? -149.19 -44.94 30 10 CYS A 14 ? ? 62.17 95.08 # _pdbx_nmr_ensemble.entry_id 8HR3 _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8HR3 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '3 mM NA- c5D7V8k16-STp(5-17), 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details 'c5D7V8k16-STp(5-17)' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'c5D7V8k16-STp(5-17)' _pdbx_nmr_exptl_sample.concentration 3 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling NA- # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 25 _pdbx_nmr_exptl_sample_conditions.details '20 mM sodium phosphate buffer prepared with a 90% H2O/10% D2O mixture at pH 6.5' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D DQF-COSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_refine.entry_id 8HR3 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.ordinal 1 _pdbx_nmr_software.classification 'structure calculation' _pdbx_nmr_software.name CNS _pdbx_nmr_software.version ? _pdbx_nmr_software.authors 'Brunger, Adams, Clore, Gros, Nilges and Read' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CYS N N N N 47 CYS CA C N R 48 CYS C C N N 49 CYS O O N N 50 CYS CB C N N 51 CYS SG S N N 52 CYS OXT O N N 53 CYS H H N N 54 CYS H2 H N N 55 CYS HA H N N 56 CYS HB2 H N N 57 CYS HB3 H N N 58 CYS HG H N N 59 CYS HXT H N N 60 DCY N N N N 61 DCY CA C N S 62 DCY C C N N 63 DCY O O N N 64 DCY CB C N N 65 DCY SG S N N 66 DCY OXT O N N 67 DCY H H N N 68 DCY H2 H N N 69 DCY HA H N N 70 DCY HB2 H N N 71 DCY HB3 H N N 72 DCY HG H N N 73 DCY HXT H N N 74 DLY N N N N 75 DLY CA C N R 76 DLY C C N N 77 DLY O O N N 78 DLY CB C N N 79 DLY CG C N N 80 DLY CD C N N 81 DLY CE C N N 82 DLY NZ N N N 83 DLY OXT O N N 84 DLY H H N N 85 DLY H2 H N N 86 DLY HA H N N 87 DLY HB2 H N N 88 DLY HB3 H N N 89 DLY HG2 H N N 90 DLY HG3 H N N 91 DLY HD2 H N N 92 DLY HD3 H N N 93 DLY HE2 H N N 94 DLY HE3 H N N 95 DLY HZ1 H N N 96 DLY HZ2 H N N 97 DLY HXT H N N 98 PRO N N N N 99 PRO CA C N S 100 PRO C C N N 101 PRO O O N N 102 PRO CB C N N 103 PRO CG C N N 104 PRO CD C N N 105 PRO OXT O N N 106 PRO H H N N 107 PRO HA H N N 108 PRO HB2 H N N 109 PRO HB3 H N N 110 PRO HG2 H N N 111 PRO HG3 H N N 112 PRO HD2 H N N 113 PRO HD3 H N N 114 PRO HXT H N N 115 VAL N N N N 116 VAL CA C N S 117 VAL C C N N 118 VAL O O N N 119 VAL CB C N N 120 VAL CG1 C N N 121 VAL CG2 C N N 122 VAL OXT O N N 123 VAL H H N N 124 VAL H2 H N N 125 VAL HA H N N 126 VAL HB H N N 127 VAL HG11 H N N 128 VAL HG12 H N N 129 VAL HG13 H N N 130 VAL HG21 H N N 131 VAL HG22 H N N 132 VAL HG23 H N N 133 VAL HXT H N N 134 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 DCY N CA sing N N 57 DCY N H sing N N 58 DCY N H2 sing N N 59 DCY CA C sing N N 60 DCY CA CB sing N N 61 DCY CA HA sing N N 62 DCY C O doub N N 63 DCY C OXT sing N N 64 DCY CB SG sing N N 65 DCY CB HB2 sing N N 66 DCY CB HB3 sing N N 67 DCY SG HG sing N N 68 DCY OXT HXT sing N N 69 DLY N CA sing N N 70 DLY N H sing N N 71 DLY N H2 sing N N 72 DLY CA C sing N N 73 DLY CA CB sing N N 74 DLY CA HA sing N N 75 DLY C O doub N N 76 DLY C OXT sing N N 77 DLY CB CG sing N N 78 DLY CB HB2 sing N N 79 DLY CB HB3 sing N N 80 DLY CG CD sing N N 81 DLY CG HG2 sing N N 82 DLY CG HG3 sing N N 83 DLY CD CE sing N N 84 DLY CD HD2 sing N N 85 DLY CD HD3 sing N N 86 DLY CE NZ sing N N 87 DLY CE HE2 sing N N 88 DLY CE HE3 sing N N 89 DLY NZ HZ1 sing N N 90 DLY NZ HZ2 sing N N 91 DLY OXT HXT sing N N 92 PRO N CA sing N N 93 PRO N CD sing N N 94 PRO N H sing N N 95 PRO CA C sing N N 96 PRO CA CB sing N N 97 PRO CA HA sing N N 98 PRO C O doub N N 99 PRO C OXT sing N N 100 PRO CB CG sing N N 101 PRO CB HB2 sing N N 102 PRO CB HB3 sing N N 103 PRO CG CD sing N N 104 PRO CG HG2 sing N N 105 PRO CG HG3 sing N N 106 PRO CD HD2 sing N N 107 PRO CD HD3 sing N N 108 PRO OXT HXT sing N N 109 VAL N CA sing N N 110 VAL N H sing N N 111 VAL N H2 sing N N 112 VAL CA C sing N N 113 VAL CA CB sing N N 114 VAL CA HA sing N N 115 VAL C O doub N N 116 VAL C OXT sing N N 117 VAL CB CG1 sing N N 118 VAL CB CG2 sing N N 119 VAL CB HB sing N N 120 VAL CG1 HG11 sing N N 121 VAL CG1 HG12 sing N N 122 VAL CG1 HG13 sing N N 123 VAL CG2 HG21 sing N N 124 VAL CG2 HG22 sing N N 125 VAL CG2 HG23 sing N N 126 VAL OXT HXT sing N N 127 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 16K01925 _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model JNM-ECA800 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer JEOL _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8HR3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #