HEADER STRUCTURAL PROTEIN 15-DEC-22 8HRQ TITLE CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM TITLE 2 CORYNEBACTERIUM GLUTAMICUM ATCC13032 (L36S/T37K) IN COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAPDH,NAD-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE COMPND 5 DEHYDROGENASE; COMPND 6 EC: 1.2.1.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 GENE: GAP, CGL1588, CG1791; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.F.SON,K.J.KIM REVDAT 1 06-DEC-23 8HRQ 0 JRNL AUTH H.F.SON,H.YU,J.HONG,D.LEE,I.K.KIM,K.J.KIM JRNL TITL STRUCTURE-GUIDED PROTEIN ENGINEERING OF JRNL TITL 2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM JRNL TITL 3 CORYNEBACTERIUM GLUTAMICUM FOR DUAL NAD/NADP COFACTOR JRNL TITL 4 SPECIFICITY. JRNL REF J.AGRIC.FOOD CHEM. V. 71 17852 2023 JRNL REFN ESSN 1520-5118 JRNL PMID 37935620 JRNL DOI 10.1021/ACS.JAFC.3C06176 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 39134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2077 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2616 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5093 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.24000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : 1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.516 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5300 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4954 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7211 ; 1.591 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11395 ; 0.528 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 7.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ;10.659 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 849 ;14.944 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 850 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6174 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1160 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2678 ; 4.049 ; 3.986 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2678 ; 4.037 ; 3.985 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3344 ; 5.230 ; 7.143 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3345 ; 5.248 ; 7.145 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2622 ; 5.238 ; 4.559 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2615 ; 5.168 ; 4.547 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3856 ; 7.496 ; 8.107 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5711 ; 8.845 ;44.040 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5712 ; 8.844 ;44.050 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8HRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300034154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39134 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.99100 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 8HRO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, CESIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.85500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.94550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.85500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.94550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -280.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -89.71000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 MET B 1 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 502 O HOH B 523 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 325 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 325 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 77 57.00 -149.16 REMARK 500 PHE A 101 39.44 -142.23 REMARK 500 SER A 121 52.84 -91.48 REMARK 500 ASN A 136 28.68 -144.33 REMARK 500 ALA A 151 -160.64 65.01 REMARK 500 ALA A 201 106.32 -37.34 REMARK 500 GLU A 316 -61.23 -91.58 REMARK 500 PHE B 10 62.46 -100.57 REMARK 500 ASP B 62 -153.40 -143.48 REMARK 500 ASP B 64 20.95 -141.80 REMARK 500 ALA B 77 46.23 -155.02 REMARK 500 ALA B 122 163.55 172.14 REMARK 500 ASN B 136 23.78 -143.48 REMARK 500 ALA B 151 -160.89 55.32 REMARK 500 ALA B 201 114.84 -37.04 REMARK 500 GLU B 316 -63.19 -90.61 REMARK 500 LYS B 333 -158.19 -125.99 REMARK 500 LEU B 334 -83.83 -43.38 REMARK 500 LEU B 335 42.98 74.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 205 ILE B 206 146.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 12 0.09 SIDE CHAIN REMARK 500 ARG A 200 0.10 SIDE CHAIN REMARK 500 ARG B 12 0.09 SIDE CHAIN REMARK 500 ARG B 54 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 633 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 401 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 O REMARK 620 2 LYS A 37 O 73.9 REMARK 620 3 ASN A 39 OD1 146.2 90.6 REMARK 620 4 TYR A 76 O 52.9 125.9 127.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B 401 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 143 O REMARK 620 2 ASN B 146 ND2 65.3 REMARK 620 N 1 DBREF 8HRQ A 1 334 UNP Q01651 G3P_CORGL 1 334 DBREF 8HRQ B 1 334 UNP Q01651 G3P_CORGL 1 334 SEQADV 8HRQ SER A 36 UNP Q01651 LEU 36 ENGINEERED MUTATION SEQADV 8HRQ LYS A 37 UNP Q01651 THR 37 ENGINEERED MUTATION SEQADV 8HRQ LEU A 335 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ GLU A 336 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS A 337 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS A 338 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS A 339 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS A 340 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS A 341 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS A 342 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ SER B 36 UNP Q01651 LEU 36 ENGINEERED MUTATION SEQADV 8HRQ LYS B 37 UNP Q01651 THR 37 ENGINEERED MUTATION SEQADV 8HRQ LEU B 335 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ GLU B 336 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS B 337 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS B 338 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS B 339 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS B 340 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS B 341 UNP Q01651 EXPRESSION TAG SEQADV 8HRQ HIS B 342 UNP Q01651 EXPRESSION TAG SEQRES 1 A 342 MET THR ILE ARG VAL GLY ILE ASN GLY PHE GLY ARG ILE SEQRES 2 A 342 GLY ARG ASN PHE PHE ARG ALA VAL LEU GLU ARG SER ASP SEQRES 3 A 342 ASP LEU GLU VAL VAL ALA VAL ASN ASP SER LYS ASP ASN SEQRES 4 A 342 LYS THR LEU SER THR LEU LEU LYS PHE ASP SER ILE MET SEQRES 5 A 342 GLY ARG LEU GLY GLN GLU VAL GLU TYR ASP ASP ASP SER SEQRES 6 A 342 ILE THR VAL GLY GLY LYS ARG ILE ALA VAL TYR ALA GLU SEQRES 7 A 342 ARG ASP PRO LYS ASN LEU ASP TRP ALA ALA HIS ASN VAL SEQRES 8 A 342 ASP ILE VAL ILE GLU SER THR GLY PHE PHE THR ASP ALA SEQRES 9 A 342 ASN ALA ALA LYS ALA HIS ILE GLU ALA GLY ALA LYS LYS SEQRES 10 A 342 VAL ILE ILE SER ALA PRO ALA SER ASN GLU ASP ALA THR SEQRES 11 A 342 PHE VAL TYR GLY VAL ASN HIS GLU SER TYR ASP PRO GLU SEQRES 12 A 342 ASN HIS ASN VAL ILE SER GLY ALA SER CYS THR THR ASN SEQRES 13 A 342 CYS LEU ALA PRO MET ALA LYS VAL LEU ASN ASP LYS PHE SEQRES 14 A 342 GLY ILE GLU ASN GLY LEU MET THR THR VAL HIS ALA TYR SEQRES 15 A 342 THR GLY ASP GLN ARG LEU HIS ASP ALA PRO HIS ARG ASP SEQRES 16 A 342 LEU ARG ARG ALA ARG ALA ALA ALA VAL ASN ILE VAL PRO SEQRES 17 A 342 THR SER THR GLY ALA ALA LYS ALA VAL ALA LEU VAL LEU SEQRES 18 A 342 PRO GLU LEU LYS GLY LYS LEU ASP GLY TYR ALA LEU ARG SEQRES 19 A 342 VAL PRO VAL ILE THR GLY SER ALA THR ASP LEU THR PHE SEQRES 20 A 342 ASN THR LYS SER GLU VAL THR VAL GLU SER ILE ASN ALA SEQRES 21 A 342 ALA ILE LYS GLU ALA ALA VAL GLY GLU PHE GLY GLU THR SEQRES 22 A 342 LEU ALA TYR SER GLU GLU PRO LEU VAL SER THR ASP ILE SEQRES 23 A 342 VAL HIS ASP SER HIS GLY SER ILE PHE ASP ALA GLY LEU SEQRES 24 A 342 THR LYS VAL SER GLY ASN THR VAL LYS VAL VAL SER TRP SEQRES 25 A 342 TYR ASP ASN GLU TRP GLY TYR THR CYS GLN LEU LEU ARG SEQRES 26 A 342 LEU THR GLU LEU VAL ALA SER LYS LEU LEU GLU HIS HIS SEQRES 27 A 342 HIS HIS HIS HIS SEQRES 1 B 342 MET THR ILE ARG VAL GLY ILE ASN GLY PHE GLY ARG ILE SEQRES 2 B 342 GLY ARG ASN PHE PHE ARG ALA VAL LEU GLU ARG SER ASP SEQRES 3 B 342 ASP LEU GLU VAL VAL ALA VAL ASN ASP SER LYS ASP ASN SEQRES 4 B 342 LYS THR LEU SER THR LEU LEU LYS PHE ASP SER ILE MET SEQRES 5 B 342 GLY ARG LEU GLY GLN GLU VAL GLU TYR ASP ASP ASP SER SEQRES 6 B 342 ILE THR VAL GLY GLY LYS ARG ILE ALA VAL TYR ALA GLU SEQRES 7 B 342 ARG ASP PRO LYS ASN LEU ASP TRP ALA ALA HIS ASN VAL SEQRES 8 B 342 ASP ILE VAL ILE GLU SER THR GLY PHE PHE THR ASP ALA SEQRES 9 B 342 ASN ALA ALA LYS ALA HIS ILE GLU ALA GLY ALA LYS LYS SEQRES 10 B 342 VAL ILE ILE SER ALA PRO ALA SER ASN GLU ASP ALA THR SEQRES 11 B 342 PHE VAL TYR GLY VAL ASN HIS GLU SER TYR ASP PRO GLU SEQRES 12 B 342 ASN HIS ASN VAL ILE SER GLY ALA SER CYS THR THR ASN SEQRES 13 B 342 CYS LEU ALA PRO MET ALA LYS VAL LEU ASN ASP LYS PHE SEQRES 14 B 342 GLY ILE GLU ASN GLY LEU MET THR THR VAL HIS ALA TYR SEQRES 15 B 342 THR GLY ASP GLN ARG LEU HIS ASP ALA PRO HIS ARG ASP SEQRES 16 B 342 LEU ARG ARG ALA ARG ALA ALA ALA VAL ASN ILE VAL PRO SEQRES 17 B 342 THR SER THR GLY ALA ALA LYS ALA VAL ALA LEU VAL LEU SEQRES 18 B 342 PRO GLU LEU LYS GLY LYS LEU ASP GLY TYR ALA LEU ARG SEQRES 19 B 342 VAL PRO VAL ILE THR GLY SER ALA THR ASP LEU THR PHE SEQRES 20 B 342 ASN THR LYS SER GLU VAL THR VAL GLU SER ILE ASN ALA SEQRES 21 B 342 ALA ILE LYS GLU ALA ALA VAL GLY GLU PHE GLY GLU THR SEQRES 22 B 342 LEU ALA TYR SER GLU GLU PRO LEU VAL SER THR ASP ILE SEQRES 23 B 342 VAL HIS ASP SER HIS GLY SER ILE PHE ASP ALA GLY LEU SEQRES 24 B 342 THR LYS VAL SER GLY ASN THR VAL LYS VAL VAL SER TRP SEQRES 25 B 342 TYR ASP ASN GLU TRP GLY TYR THR CYS GLN LEU LEU ARG SEQRES 26 B 342 LEU THR GLU LEU VAL ALA SER LYS LEU LEU GLU HIS HIS SEQRES 27 B 342 HIS HIS HIS HIS HET CS A 401 1 HET NAD A 402 44 HET EDO A 403 4 HET EDO A 404 4 HET GOL A 405 6 HET PO4 A 406 5 HET CS B 401 1 HET NAD B 402 44 HET GOL B 403 6 HET PO4 B 404 5 HETNAM CS CESIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CS 2(CS 1+) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 8 PO4 2(O4 P 3-) FORMUL 13 HOH *241(H2 O) HELIX 1 AA1 GLY A 11 SER A 25 1 15 HELIX 2 AA2 ASP A 38 LYS A 47 1 10 HELIX 3 AA3 ASP A 80 LEU A 84 5 5 HELIX 4 AA4 ASP A 85 ASN A 90 5 6 HELIX 5 AA5 ASP A 103 LYS A 108 1 6 HELIX 6 AA6 LYS A 108 ALA A 113 1 6 HELIX 7 AA7 ASN A 136 TYR A 140 5 5 HELIX 8 AA8 SER A 152 PHE A 169 1 18 HELIX 9 AA9 ALA A 201 ASN A 205 5 5 HELIX 10 AB1 ALA A 214 VAL A 220 5 7 HELIX 11 AB2 LEU A 221 LYS A 225 5 5 HELIX 12 AB3 THR A 254 ALA A 266 1 13 HELIX 13 AB4 GLU A 269 GLU A 272 5 4 HELIX 14 AB5 VAL A 282 ILE A 286 5 5 HELIX 15 AB6 GLY A 298 THR A 300 5 3 HELIX 16 AB7 GLU A 316 LYS A 333 1 18 HELIX 17 AB8 GLY B 11 SER B 25 1 15 HELIX 18 AB9 ASP B 38 PHE B 48 1 11 HELIX 19 AC1 ASP B 80 LEU B 84 5 5 HELIX 20 AC2 TRP B 86 ASN B 90 5 5 HELIX 21 AC3 ASP B 103 LYS B 108 1 6 HELIX 22 AC4 LYS B 108 ALA B 113 1 6 HELIX 23 AC5 ASN B 136 TYR B 140 5 5 HELIX 24 AC6 SER B 152 GLY B 170 1 19 HELIX 25 AC7 GLY B 212 LEU B 221 1 10 HELIX 26 AC8 PRO B 222 LYS B 225 5 4 HELIX 27 AC9 THR B 254 ALA B 266 1 13 HELIX 28 AD1 VAL B 267 GLU B 272 5 6 HELIX 29 AD2 VAL B 282 ILE B 286 5 5 HELIX 30 AD3 GLY B 298 THR B 300 5 3 HELIX 31 AD4 GLU B 316 SER B 332 1 17 SHEET 1 AA1 9 VAL A 59 TYR A 61 0 SHEET 2 AA1 9 SER A 65 VAL A 68 -1 O THR A 67 N GLU A 60 SHEET 3 AA1 9 LYS A 71 TYR A 76 -1 O ILE A 73 N ILE A 66 SHEET 4 AA1 9 LEU A 28 ASN A 34 1 N VAL A 33 O ALA A 74 SHEET 5 AA1 9 ILE A 3 ASN A 8 1 N VAL A 5 O GLU A 29 SHEET 6 AA1 9 ILE A 93 GLU A 96 1 O ILE A 95 N ASN A 8 SHEET 7 AA1 9 LYS A 117 ILE A 120 1 O ILE A 119 N GLU A 96 SHEET 8 AA1 9 VAL A 147 SER A 149 1 O ILE A 148 N ILE A 120 SHEET 9 AA1 9 ALA A 129 THR A 130 1 N ALA A 129 O SER A 149 SHEET 1 AA2 2 PHE A 48 ASP A 49 0 SHEET 2 AA2 2 GLY A 53 ARG A 54 -1 O GLY A 53 N ASP A 49 SHEET 1 AA3 7 VAL A 207 SER A 210 0 SHEET 2 AA3 7 LEU A 228 VAL A 235 -1 O ARG A 234 N VAL A 207 SHEET 3 AA3 7 ASN A 173 ALA A 181 1 N THR A 178 O LEU A 233 SHEET 4 AA3 7 SER A 241 ASN A 248 -1 O ASP A 244 N THR A 177 SHEET 5 AA3 7 THR A 306 TYR A 313 -1 O SER A 311 N THR A 243 SHEET 6 AA3 7 SER A 293 ASP A 296 -1 N ILE A 294 O TRP A 312 SHEET 7 AA3 7 LEU A 274 SER A 277 1 N ALA A 275 O PHE A 295 SHEET 1 AA4 6 VAL A 207 SER A 210 0 SHEET 2 AA4 6 LEU A 228 VAL A 235 -1 O ARG A 234 N VAL A 207 SHEET 3 AA4 6 ASN A 173 ALA A 181 1 N THR A 178 O LEU A 233 SHEET 4 AA4 6 SER A 241 ASN A 248 -1 O ASP A 244 N THR A 177 SHEET 5 AA4 6 THR A 306 TYR A 313 -1 O SER A 311 N THR A 243 SHEET 6 AA4 6 LYS A 301 SER A 303 -1 N SER A 303 O THR A 306 SHEET 1 AA5 9 VAL B 59 TYR B 61 0 SHEET 2 AA5 9 SER B 65 VAL B 68 -1 O THR B 67 N GLU B 60 SHEET 3 AA5 9 LYS B 71 TYR B 76 -1 O ILE B 73 N ILE B 66 SHEET 4 AA5 9 LEU B 28 ASN B 34 1 N VAL B 33 O TYR B 76 SHEET 5 AA5 9 ILE B 3 ASN B 8 1 N VAL B 5 O GLU B 29 SHEET 6 AA5 9 ILE B 93 GLU B 96 1 O ILE B 95 N ASN B 8 SHEET 7 AA5 9 LYS B 117 ILE B 120 1 O ILE B 119 N GLU B 96 SHEET 8 AA5 9 VAL B 147 SER B 149 1 O ILE B 148 N ILE B 120 SHEET 9 AA5 9 ALA B 129 THR B 130 1 N ALA B 129 O SER B 149 SHEET 1 AA6 7 VAL B 207 SER B 210 0 SHEET 2 AA6 7 LEU B 228 VAL B 235 -1 O ALA B 232 N THR B 209 SHEET 3 AA6 7 ASN B 173 ALA B 181 1 N THR B 178 O LEU B 233 SHEET 4 AA6 7 SER B 241 ASN B 248 -1 O THR B 246 N LEU B 175 SHEET 5 AA6 7 THR B 306 TYR B 313 -1 O SER B 311 N THR B 243 SHEET 6 AA6 7 SER B 293 ASP B 296 -1 N ILE B 294 O TRP B 312 SHEET 7 AA6 7 LEU B 274 SER B 277 1 N ALA B 275 O SER B 293 SHEET 1 AA7 6 VAL B 207 SER B 210 0 SHEET 2 AA7 6 LEU B 228 VAL B 235 -1 O ALA B 232 N THR B 209 SHEET 3 AA7 6 ASN B 173 ALA B 181 1 N THR B 178 O LEU B 233 SHEET 4 AA7 6 SER B 241 ASN B 248 -1 O THR B 246 N LEU B 175 SHEET 5 AA7 6 THR B 306 TYR B 313 -1 O SER B 311 N THR B 243 SHEET 6 AA7 6 LYS B 301 SER B 303 -1 N SER B 303 O THR B 306 LINK O ASP A 35 CS CS A 401 1555 1555 3.43 LINK O LYS A 37 CS CS A 401 1555 1555 2.89 LINK OD1 ASN A 39 CS CS A 401 1555 1555 3.17 LINK O TYR A 76 CS CS A 401 1555 1555 3.47 LINK O GLU B 143 CS CS B 401 1555 1555 3.15 LINK ND2 ASN B 146 CS CS B 401 1555 1555 3.08 CRYST1 89.710 117.891 77.128 90.00 116.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011147 0.000000 0.005660 0.00000 SCALE2 0.000000 0.008482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014541 0.00000