HEADER TRANSFERASE 26-DEC-22 8HV4 TITLE CRYSTAL STRUCTURE OF EGFR_TMX IN COMPLEX WITH COVALENTLY BOUND TITLE 2 FRAGMENT 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS EPIDERMAL GROWTH FACTOR RECEPTOR KINASE, COVALENT FRAGMENTS, MUTANT KEYWDS 2 EGFR, ANTI-CANCER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.DOKURNO REVDAT 2 03-APR-24 8HV4 1 JRNL REVDAT 1 13-DEC-23 8HV4 0 JRNL AUTH N.KUKI,D.L.WALMSLEY,K.KANAI,S.TAKECHI,M.YOSHIDA,R.MURAKAMI, JRNL AUTH 2 K.TAKANO,Y.TOMINAGA,M.TAKAHASHI,S.ITO,N.NAKAO,H.ANGOVE, JRNL AUTH 3 L.M.BAKER,E.CARTER,P.DOKURNO,L.LE STRAT,A.T.MACIAS, JRNL AUTH 4 C.A.MOLYNEAUX,J.B.MURRAY,A.E.SURGENOR,T.HAMADA,R.E.HUBBARD JRNL TITL A COVALENT FRAGMENT-BASED STRATEGY TARGETING A NOVEL JRNL TITL 2 CYSTEINE TO INHIBIT ACTIVITY OF MUTANT EGFR KINASE. JRNL REF RSC MED CHEM V. 14 2731 2023 JRNL REFN ESSN 2632-8682 JRNL PMID 38107172 JRNL DOI 10.1039/D3MD00439B REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 24015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3478 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2467 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2402 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3331 ; 1.668 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5522 ; 1.329 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 7.086 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;36.111 ;22.069 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 426 ;17.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.155 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2695 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 526 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1212 ; 4.573 ; 4.479 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1211 ; 4.566 ; 4.477 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1508 ; 6.941 ; 6.678 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1509 ; 6.940 ; 6.681 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1255 ; 5.080 ; 4.611 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1256 ; 5.078 ; 4.611 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1824 ; 7.699 ; 6.758 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11264 ;12.840 ;80.122 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11257 ;12.843 ;80.113 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8HV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER TURBO X-RAY SOURCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SADABS REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 21.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.620 REMARK 200 R MERGE (I) : 0.10010 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.64650 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5EDQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 0.15M SODIUM REMARK 280 CITRATE, 25%PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.36100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.36100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.36100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.36100 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.36100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.36100 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.36100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.36100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.36100 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.36100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.36100 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.36100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.36100 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.36100 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.36100 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.36100 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.36100 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.36100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.36100 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.36100 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.36100 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.36100 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.36100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.36100 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.36100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.36100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O4 PE5 A1101 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1320 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1344 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 694 REMARK 465 SER A 695 REMARK 465 GLY A 721 REMARK 465 ALA A 722 REMARK 465 PHE A 723 REMARK 465 ALA A 864 REMARK 465 ALA A 865 REMARK 465 ALA A 866 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 465 ASN A 1023 REMARK 465 SER A 1024 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 ARG A 748 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 LYS A 754 CG CD CE NZ REMARK 470 LYS A 757 CG CD CE NZ REMARK 470 GLU A 868 CG CD OE1 OE2 REMARK 470 HIS A 870 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 872 CG CD OE1 OE2 REMARK 470 LYS A 875 CG CD CE NZ REMARK 470 LYS A 929 CG CD CE NZ REMARK 470 GLU A 985 CG CD OE1 OE2 REMARK 470 HIS A 988 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A1005 CG CD OE1 OE2 REMARK 470 MET A1007 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1328 O HOH A 1329 2.00 REMARK 500 O HOH A 1296 O HOH A 1322 2.17 REMARK 500 O HOH A 1302 O HOH A 1335 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 748 -75.55 -69.33 REMARK 500 ALA A 750 -0.03 68.57 REMARK 500 THR A 751 -4.07 -57.95 REMARK 500 LEU A 782 56.61 -103.46 REMARK 500 ASP A 837 34.90 -152.56 REMARK 500 ASP A 855 76.52 60.63 REMARK 500 GLU A 872 43.34 -158.86 REMARK 500 ALA A 882 151.02 -49.78 REMARK 500 ARG A 986 41.15 -86.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE5 A 1101 DBREF 8HV4 A 695 1022 UNP P00533 EGFR_HUMAN 695 1022 SEQADV 8HV4 GLY A 694 UNP P00533 EXPRESSION TAG SEQADV 8HV4 MET A 790 UNP P00533 THR 790 VARIANT SEQADV 8HV4 SER A 797 UNP P00533 CYS 797 VARIANT SEQADV 8HV4 ARG A 858 UNP P00533 LEU 858 VARIANT SEQADV 8HV4 ALA A 865 UNP P00533 GLU 865 ENGINEERED MUTATION SEQADV 8HV4 ALA A 866 UNP P00533 GLU 866 ENGINEERED MUTATION SEQADV 8HV4 ALA A 867 UNP P00533 LYS 867 ENGINEERED MUTATION SEQADV 8HV4 ASN A 1023 UNP P00533 EXPRESSION TAG SEQADV 8HV4 SER A 1024 UNP P00533 EXPRESSION TAG SEQRES 1 A 331 GLY SER GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE SEQRES 2 A 331 LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SEQRES 3 A 331 SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE SEQRES 4 A 331 PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS SEQRES 5 A 331 GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU SEQRES 6 A 331 ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN SEQRES 7 A 331 PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER SEQRES 8 A 331 THR VAL GLN LEU ILE MET GLN LEU MET PRO PHE GLY SER SEQRES 9 A 331 LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SEQRES 10 A 331 SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS SEQRES 11 A 331 GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG SEQRES 12 A 331 ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN SEQRES 13 A 331 HIS VAL LYS ILE THR ASP PHE GLY ARG ALA LYS LEU LEU SEQRES 14 A 331 GLY ALA ALA ALA ALA GLU TYR HIS ALA GLU GLY GLY LYS SEQRES 15 A 331 VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS SEQRES 16 A 331 ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY SEQRES 17 A 331 VAL THR VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO SEQRES 18 A 331 TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU SEQRES 19 A 331 GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR SEQRES 20 A 331 ILE ASP VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE SEQRES 21 A 331 ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE SEQRES 22 A 331 GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU SEQRES 23 A 331 VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO SEQRES 24 A 331 THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU SEQRES 25 A 331 ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE SEQRES 26 A 331 PRO GLN GLN GLY ASN SER HET PE5 A1101 26 HET MWU A1102 11 HET DMS A1103 4 HET CL A1104 1 HET CL A1105 1 HET CL A1106 1 HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETNAM MWU ~{N}-PYRIDIN-2-YLPROP-2-ENAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 FORMUL 2 PE5 C18 H38 O9 FORMUL 3 MWU C8 H8 N2 O FORMUL 4 DMS C2 H6 O S FORMUL 5 CL 3(CL 1-) FORMUL 8 HOH *148(H2 O) HELIX 1 AA1 LYS A 708 THR A 710 5 3 HELIX 2 AA2 SER A 752 SER A 768 1 17 HELIX 3 AA3 SER A 797 LYS A 806 1 10 HELIX 4 AA4 ASP A 807 ILE A 809 5 3 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 PRO A 877 MET A 881 5 5 HELIX 8 AA8 ALA A 882 ARG A 889 1 8 HELIX 9 AA9 THR A 892 THR A 909 1 18 HELIX 10 AB1 PRO A 919 LYS A 929 1 11 HELIX 11 AB2 THR A 940 CYS A 950 1 11 HELIX 12 AB3 ASP A 954 ARG A 958 5 5 HELIX 13 AB4 LYS A 960 ARG A 973 1 14 HELIX 14 AB5 ASP A 974 TYR A 978 5 5 HELIX 15 AB6 GLY A 983 MET A 987 5 5 HELIX 16 AB7 ASP A 1012 TYR A 1016 5 5 SHEET 1 AA1 5 PHE A 712 GLY A 719 0 SHEET 2 AA1 5 THR A 725 TRP A 731 -1 O VAL A 726 N LEU A 718 SHEET 3 AA1 5 ILE A 740 GLU A 746 -1 O VAL A 742 N GLY A 729 SHEET 4 AA1 5 VAL A 786 GLN A 791 -1 O LEU A 788 N LYS A 745 SHEET 5 AA1 5 LEU A 777 LEU A 782 -1 N GLY A 779 O ILE A 789 SHEET 1 AA2 2 LEU A 833 VAL A 834 0 SHEET 2 AA2 2 LYS A 860 LEU A 861 -1 O LYS A 860 N VAL A 834 SHEET 1 AA3 2 VAL A 843 THR A 847 0 SHEET 2 AA3 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 LINK SG CYS A 775 C1 MWU A1102 1555 1555 1.78 CRYST1 144.722 144.722 144.722 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006910 0.00000