HEADER HYDROLASE 27-DEC-22 8HVJ TITLE THE STRUCTURE OF THE E. COLI MRNA ENDOONUCLEASE YICC COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0701 PROTEIN YICC; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: YICC, B3644, JW3619; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MRNA ENDOONUCLEASE, YICC, MRNA METABOLISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.XIE,L.HUNAG REVDAT 1 27-DEC-23 8HVJ 0 JRNL AUTH W.XIE,L.HUNAG JRNL TITL THE STRUCTURE OF THE E. COLI MRNA ENDOONUCLEASE YICC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 4.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.321 REMARK 3 FREE R VALUE : 0.385 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.753 REMARK 3 FREE R VALUE TEST SET COUNT : 434 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.4590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 196.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.02200 REMARK 3 B22 (A**2) : -2.36700 REMARK 3 B33 (A**2) : -2.65500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 1.346 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.882 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8HVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9159 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.050 REMARK 200 RESOLUTION RANGE LOW (A) : 102.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24.5% PEG 3350, 0.15M AMMONIUM REMARK 280 SULFATE, 0.1M HEPES PH7.5, 5MM MGCL2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 67.10400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.57900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.10400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.57900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 84360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 MET A 5 REMARK 465 THR A 6 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 MET B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 TYR B 8 REMARK 465 ALA B 9 REMARK 465 ARG B 10 REMARK 465 GLY B 76 REMARK 465 GLU B 77 REMARK 465 LEU B 78 REMARK 465 LYS B 96 REMARK 465 MET B 97 REMARK 465 GLN B 98 REMARK 465 SER B 99 REMARK 465 ASP B 100 REMARK 465 GLU B 101 REMARK 465 GLY B 102 REMARK 465 GLU B 103 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 ARG C 3 REMARK 465 SER C 4 REMARK 465 MET C 5 REMARK 465 THR C 6 REMARK 465 ALA C 7 REMARK 465 TYR C 8 REMARK 465 ALA C 9 REMARK 465 ARG C 10 REMARK 465 ARG C 11 REMARK 465 GLU C 12 REMARK 465 ILE C 13 REMARK 465 LYS C 14 REMARK 465 GLY C 15 REMARK 465 GLU C 16 REMARK 465 TRP C 17 REMARK 465 GLY C 18 REMARK 465 SER C 19 REMARK 465 ALA C 20 REMARK 465 ARG C 37 REMARK 465 LEU C 38 REMARK 465 VAL C 72 REMARK 465 SER C 73 REMARK 465 ALA C 74 REMARK 465 GLN C 75 REMARK 465 GLY C 76 REMARK 465 GLU C 77 REMARK 465 LEU C 78 REMARK 465 ILE C 79 REMARK 465 LEU C 80 REMARK 465 ASN C 81 REMARK 465 GLN C 98 REMARK 465 SER C 99 REMARK 465 ASP C 100 REMARK 465 GLU C 101 REMARK 465 GLY C 102 REMARK 465 GLU C 103 REMARK 465 GLU C 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 LEU A 78 CG CD1 CD2 REMARK 470 ILE A 79 CG1 CG2 CD1 REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 TRP A 112 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 112 CZ3 CH2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 TRP A 180 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 180 CZ3 CH2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 TRP B 17 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 17 CZ3 CH2 REMARK 470 ILE B 79 CG1 CG2 CD1 REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 VAL B 95 CG1 CG2 REMARK 470 TRP B 180 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 180 CZ3 CH2 REMARK 470 ARG B 184 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 LEU B 189 CG CD1 CD2 REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 ASP B 191 CG OD1 OD2 REMARK 470 GLN B 193 CG CD OE1 NE2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 PHE B 244 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET B 245 CG SD CE REMARK 470 GLN B 247 CG CD OE1 NE2 REMARK 470 THR B 255 OG1 CG2 REMARK 470 LYS B 259 CG CD CE NZ REMARK 470 GLN C 29 CG CD OE1 NE2 REMARK 470 ARG C 30 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 31 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO C 39 CG CD REMARK 470 ARG C 67 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 82 CG CD OE1 OE2 REMARK 470 LYS C 83 CG CD CE NZ REMARK 470 TRP C 94 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 94 CZ3 CH2 REMARK 470 MET C 97 CG SD CE REMARK 470 GLN C 119 CG CD OE1 NE2 REMARK 470 LEU C 232 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 32 C - N - CA ANGL. DEV. = -25.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 8 147.58 -175.22 REMARK 500 LYS A 14 95.76 60.17 REMARK 500 ASN A 28 106.25 -56.08 REMARK 500 PRO A 39 -168.65 -62.46 REMARK 500 GLU A 77 -131.45 57.20 REMARK 500 LEU A 78 -111.85 58.40 REMARK 500 ARG A 111 33.32 -70.93 REMARK 500 GLN A 119 77.84 -59.37 REMARK 500 ASP A 122 76.66 -32.10 REMARK 500 GLN A 193 -11.74 69.59 REMARK 500 ASN A 198 -89.91 66.24 REMARK 500 ILE A 212 -30.30 121.19 REMARK 500 GLU A 236 -103.38 -84.88 REMARK 500 ALA A 237 34.09 -90.67 REMARK 500 VAL A 238 179.19 33.09 REMARK 500 VAL B 27 -109.61 42.59 REMARK 500 ASN B 28 107.30 171.97 REMARK 500 PRO B 39 -133.11 -74.44 REMARK 500 GLU B 40 -15.78 -141.13 REMARK 500 THR B 65 147.18 49.41 REMARK 500 LEU B 66 -123.97 -115.22 REMARK 500 ARG B 111 41.40 -74.83 REMARK 500 MET B 116 -73.65 -113.09 REMARK 500 ALA B 117 -68.30 53.98 REMARK 500 ALA B 118 109.08 67.54 REMARK 500 ASP B 122 38.82 -176.85 REMARK 500 GLN B 193 -70.80 -60.70 REMARK 500 ASN B 199 -177.32 129.74 REMARK 500 GLU B 236 -159.86 -104.01 REMARK 500 ARG B 280 23.19 -63.68 REMARK 500 GLU B 281 -32.17 -136.06 REMARK 500 VAL C 27 -154.80 -83.96 REMARK 500 GLN C 29 -108.44 -148.36 REMARK 500 TYR C 31 -161.46 46.97 REMARK 500 THR C 58 -89.45 -75.19 REMARK 500 ASN C 105 127.25 71.74 REMARK 500 ASP C 108 -85.79 -73.90 REMARK 500 ILE C 109 93.78 -59.30 REMARK 500 LEU C 110 -74.14 -125.22 REMARK 500 GLN C 119 -157.19 72.24 REMARK 500 GLU C 120 -26.48 -140.53 REMARK 500 ASP C 122 86.49 -62.20 REMARK 500 GLU C 236 -153.41 -107.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN C 28 -15.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 8HVJ A 1 287 UNP P23839 YICC_ECOLI 1 287 DBREF 8HVJ B 1 287 UNP P23839 YICC_ECOLI 1 287 DBREF 8HVJ C 1 287 UNP P23839 YICC_ECOLI 1 287 SEQRES 1 A 287 MET ILE ARG SER MET THR ALA TYR ALA ARG ARG GLU ILE SEQRES 2 A 287 LYS GLY GLU TRP GLY SER ALA THR TRP GLU MET ARG SER SEQRES 3 A 287 VAL ASN GLN ARG TYR LEU GLU THR TYR PHE ARG LEU PRO SEQRES 4 A 287 GLU GLN PHE ARG SER LEU GLU PRO VAL VAL ARG GLU ARG SEQRES 5 A 287 ILE ARG SER ARG LEU THR ARG GLY LYS VAL GLU CYS THR SEQRES 6 A 287 LEU ARG TYR GLU PRO ASP VAL SER ALA GLN GLY GLU LEU SEQRES 7 A 287 ILE LEU ASN GLU LYS LEU ALA LYS GLN LEU VAL THR ALA SEQRES 8 A 287 ALA ASN TRP VAL LYS MET GLN SER ASP GLU GLY GLU ILE SEQRES 9 A 287 ASN PRO VAL ASP ILE LEU ARG TRP PRO GLY VAL MET ALA SEQRES 10 A 287 ALA GLN GLU GLN ASP LEU ASP ALA ILE ALA ALA GLU ILE SEQRES 11 A 287 LEU ALA ALA LEU ASP GLY THR LEU ASP ASP PHE ILE VAL SEQRES 12 A 287 ALA ARG GLU THR GLU GLY GLN ALA LEU LYS ALA LEU ILE SEQRES 13 A 287 GLU GLN ARG LEU GLU GLY VAL THR ALA GLU VAL VAL LYS SEQRES 14 A 287 VAL ARG SER HIS MET PRO GLU ILE LEU GLN TRP GLN ARG SEQRES 15 A 287 GLU ARG LEU VAL ALA LYS LEU GLU ASP ALA GLN VAL GLN SEQRES 16 A 287 LEU GLU ASN ASN ARG LEU GLU GLN GLU LEU VAL LEU LEU SEQRES 17 A 287 ALA GLN ARG ILE ASP VAL ALA GLU GLU LEU ASP ARG LEU SEQRES 18 A 287 GLU ALA HIS VAL LYS GLU THR TYR ASN ILE LEU LYS LYS SEQRES 19 A 287 LYS GLU ALA VAL GLY ARG ARG LEU ASP PHE MET MET GLN SEQRES 20 A 287 GLU PHE ASN ARG GLU SER ASN THR LEU ALA SER LYS SER SEQRES 21 A 287 ILE ASN ALA GLU VAL THR ASN SER ALA ILE GLU LEU LYS SEQRES 22 A 287 VAL LEU ILE GLU GLN MET ARG GLU GLN ILE GLN ASN ILE SEQRES 23 A 287 GLU SEQRES 1 B 287 MET ILE ARG SER MET THR ALA TYR ALA ARG ARG GLU ILE SEQRES 2 B 287 LYS GLY GLU TRP GLY SER ALA THR TRP GLU MET ARG SER SEQRES 3 B 287 VAL ASN GLN ARG TYR LEU GLU THR TYR PHE ARG LEU PRO SEQRES 4 B 287 GLU GLN PHE ARG SER LEU GLU PRO VAL VAL ARG GLU ARG SEQRES 5 B 287 ILE ARG SER ARG LEU THR ARG GLY LYS VAL GLU CYS THR SEQRES 6 B 287 LEU ARG TYR GLU PRO ASP VAL SER ALA GLN GLY GLU LEU SEQRES 7 B 287 ILE LEU ASN GLU LYS LEU ALA LYS GLN LEU VAL THR ALA SEQRES 8 B 287 ALA ASN TRP VAL LYS MET GLN SER ASP GLU GLY GLU ILE SEQRES 9 B 287 ASN PRO VAL ASP ILE LEU ARG TRP PRO GLY VAL MET ALA SEQRES 10 B 287 ALA GLN GLU GLN ASP LEU ASP ALA ILE ALA ALA GLU ILE SEQRES 11 B 287 LEU ALA ALA LEU ASP GLY THR LEU ASP ASP PHE ILE VAL SEQRES 12 B 287 ALA ARG GLU THR GLU GLY GLN ALA LEU LYS ALA LEU ILE SEQRES 13 B 287 GLU GLN ARG LEU GLU GLY VAL THR ALA GLU VAL VAL LYS SEQRES 14 B 287 VAL ARG SER HIS MET PRO GLU ILE LEU GLN TRP GLN ARG SEQRES 15 B 287 GLU ARG LEU VAL ALA LYS LEU GLU ASP ALA GLN VAL GLN SEQRES 16 B 287 LEU GLU ASN ASN ARG LEU GLU GLN GLU LEU VAL LEU LEU SEQRES 17 B 287 ALA GLN ARG ILE ASP VAL ALA GLU GLU LEU ASP ARG LEU SEQRES 18 B 287 GLU ALA HIS VAL LYS GLU THR TYR ASN ILE LEU LYS LYS SEQRES 19 B 287 LYS GLU ALA VAL GLY ARG ARG LEU ASP PHE MET MET GLN SEQRES 20 B 287 GLU PHE ASN ARG GLU SER ASN THR LEU ALA SER LYS SER SEQRES 21 B 287 ILE ASN ALA GLU VAL THR ASN SER ALA ILE GLU LEU LYS SEQRES 22 B 287 VAL LEU ILE GLU GLN MET ARG GLU GLN ILE GLN ASN ILE SEQRES 23 B 287 GLU SEQRES 1 C 287 MET ILE ARG SER MET THR ALA TYR ALA ARG ARG GLU ILE SEQRES 2 C 287 LYS GLY GLU TRP GLY SER ALA THR TRP GLU MET ARG SER SEQRES 3 C 287 VAL ASN GLN ARG TYR LEU GLU THR TYR PHE ARG LEU PRO SEQRES 4 C 287 GLU GLN PHE ARG SER LEU GLU PRO VAL VAL ARG GLU ARG SEQRES 5 C 287 ILE ARG SER ARG LEU THR ARG GLY LYS VAL GLU CYS THR SEQRES 6 C 287 LEU ARG TYR GLU PRO ASP VAL SER ALA GLN GLY GLU LEU SEQRES 7 C 287 ILE LEU ASN GLU LYS LEU ALA LYS GLN LEU VAL THR ALA SEQRES 8 C 287 ALA ASN TRP VAL LYS MET GLN SER ASP GLU GLY GLU ILE SEQRES 9 C 287 ASN PRO VAL ASP ILE LEU ARG TRP PRO GLY VAL MET ALA SEQRES 10 C 287 ALA GLN GLU GLN ASP LEU ASP ALA ILE ALA ALA GLU ILE SEQRES 11 C 287 LEU ALA ALA LEU ASP GLY THR LEU ASP ASP PHE ILE VAL SEQRES 12 C 287 ALA ARG GLU THR GLU GLY GLN ALA LEU LYS ALA LEU ILE SEQRES 13 C 287 GLU GLN ARG LEU GLU GLY VAL THR ALA GLU VAL VAL LYS SEQRES 14 C 287 VAL ARG SER HIS MET PRO GLU ILE LEU GLN TRP GLN ARG SEQRES 15 C 287 GLU ARG LEU VAL ALA LYS LEU GLU ASP ALA GLN VAL GLN SEQRES 16 C 287 LEU GLU ASN ASN ARG LEU GLU GLN GLU LEU VAL LEU LEU SEQRES 17 C 287 ALA GLN ARG ILE ASP VAL ALA GLU GLU LEU ASP ARG LEU SEQRES 18 C 287 GLU ALA HIS VAL LYS GLU THR TYR ASN ILE LEU LYS LYS SEQRES 19 C 287 LYS GLU ALA VAL GLY ARG ARG LEU ASP PHE MET MET GLN SEQRES 20 C 287 GLU PHE ASN ARG GLU SER ASN THR LEU ALA SER LYS SER SEQRES 21 C 287 ILE ASN ALA GLU VAL THR ASN SER ALA ILE GLU LEU LYS SEQRES 22 C 287 VAL LEU ILE GLU GLN MET ARG GLU GLN ILE GLN ASN ILE SEQRES 23 C 287 GLU HELIX 1 AA1 LEU A 45 SER A 55 1 11 HELIX 2 AA2 ASP A 71 GLY A 76 1 6 HELIX 3 AA3 ASN A 81 SER A 99 1 19 HELIX 4 AA4 ASN A 105 ARG A 111 1 7 HELIX 5 AA5 ASP A 122 SER A 172 1 51 HELIX 6 AA6 HIS A 173 ALA A 192 1 20 HELIX 7 AA7 ASN A 198 GLN A 210 1 13 HELIX 8 AA8 ALA A 215 LYS A 233 1 19 HELIX 9 AA9 ALA A 237 ARG A 240 5 4 HELIX 10 AB1 ARG A 241 SER A 258 1 18 HELIX 11 AB2 ASN A 262 ILE A 283 1 22 HELIX 12 AB3 GLN A 284 ILE A 286 5 3 HELIX 13 AB4 LEU B 45 SER B 55 1 11 HELIX 14 AB5 ASN B 81 TRP B 94 1 14 HELIX 15 AB6 ASN B 105 ARG B 111 1 7 HELIX 16 AB7 ASP B 122 SER B 172 1 51 HELIX 17 AB8 HIS B 173 GLN B 195 1 23 HELIX 18 AB9 ARG B 200 GLN B 210 1 11 HELIX 19 AC1 ILE B 212 LEU B 232 1 21 HELIX 20 AC2 VAL B 238 SER B 258 1 21 HELIX 21 AC3 ASN B 262 ILE B 283 1 22 HELIX 22 AC4 LEU C 45 SER C 55 1 11 HELIX 23 AC5 LYS C 83 VAL C 95 1 13 HELIX 24 AC6 TRP C 112 ALA C 118 1 7 HELIX 25 AC7 ASP C 122 ALA C 192 1 71 HELIX 26 AC8 GLU C 197 ASP C 213 1 17 HELIX 27 AC9 VAL C 214 LEU C 232 1 19 HELIX 28 AD1 ARG C 240 SER C 258 1 19 HELIX 29 AD2 ASN C 262 GLN C 284 1 23 SHEET 1 AA1 4 TYR A 8 GLU A 12 0 SHEET 2 AA1 4 GLY A 18 VAL A 27 -1 O MET A 24 N ALA A 9 SHEET 3 AA1 4 GLY A 60 PRO A 70 -1 O GLU A 69 N SER A 19 SHEET 4 AA1 4 LEU A 32 ARG A 37 1 N GLU A 33 O VAL A 62 SHEET 1 AA2 2 GLU B 12 LYS B 14 0 SHEET 2 AA2 2 SER B 19 THR B 21 -1 O ALA B 20 N ILE B 13 SHEET 1 AA3 2 LEU B 32 PHE B 36 0 SHEET 2 AA3 2 GLY B 60 CYS B 64 1 O GLY B 60 N GLU B 33 SHEET 1 AA4 2 TRP C 22 MET C 24 0 SHEET 2 AA4 2 CYS C 64 LEU C 66 -1 O THR C 65 N GLU C 23 CISPEP 1 GLN A 210 ARG A 211 0 -4.39 CRYST1 134.208 77.158 102.596 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009747 0.00000