HEADER TOXIN 28-DEC-22 8HW0 TITLE THE STRUCTURE OF AKR6D1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH-DEPENDENT ALDO/KETO REDUCTASE AKR6D1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEVOSIA; SOURCE 3 ORGANISM_TAXID: 46913; SOURCE 4 GENE: AKR6D1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CHEN,H.YANG REVDAT 1 17-JAN-24 8HW0 0 JRNL AUTH M.CHEN,H.YANG,F.LV JRNL TITL STRUCTURE OF AKR6D1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V3.0 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 110872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8500 - 3.6100 1.00 8160 149 0.1489 0.1405 REMARK 3 2 3.6100 - 2.8700 1.00 7868 146 0.1589 0.1710 REMARK 3 3 2.8700 - 2.5100 1.00 7839 144 0.1773 0.1731 REMARK 3 4 2.5100 - 2.2800 1.00 7791 143 0.1806 0.1813 REMARK 3 5 2.2800 - 2.1100 1.00 7765 142 0.1805 0.2092 REMARK 3 6 2.1100 - 1.9900 1.00 7763 143 0.1845 0.2044 REMARK 3 7 1.9900 - 1.8900 1.00 7737 142 0.1924 0.1951 REMARK 3 8 1.8900 - 1.8100 1.00 7742 142 0.1961 0.2130 REMARK 3 9 1.8100 - 1.7400 1.00 7728 142 0.1932 0.1946 REMARK 3 10 1.7400 - 1.6800 1.00 7721 142 0.2010 0.2252 REMARK 3 11 1.6800 - 1.6300 1.00 7720 142 0.2023 0.2208 REMARK 3 12 1.6300 - 1.5800 1.00 7680 141 0.2098 0.2293 REMARK 3 13 1.5800 - 1.5400 1.00 7698 142 0.2083 0.2019 REMARK 3 14 1.5400 - 1.5000 1.00 7660 140 0.2250 0.2042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2696 REMARK 3 ANGLE : 1.301 3660 REMARK 3 CHIRALITY : 0.059 394 REMARK 3 PLANARITY : 0.006 466 REMARK 3 DIHEDRAL : 15.481 368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110879 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 78.82500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 78.82500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.62950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 78.82500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 78.82500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 55.62950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 78.82500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 78.82500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 55.62950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 78.82500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 78.82500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 55.62950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 78.82500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 78.82500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 55.62950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 78.82500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 78.82500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 55.62950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 78.82500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 78.82500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 55.62950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 78.82500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 78.82500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.62950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 691 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 946 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 988 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 207 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 207 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 305 O HOH A 501 2.03 REMARK 500 O HOH A 508 O HOH A 758 2.06 REMARK 500 O HOH A 667 O HOH A 861 2.09 REMARK 500 OG1 THR A 142 O HOH A 502 2.10 REMARK 500 O HOH A 807 O HOH A 811 2.12 REMARK 500 O HOH A 577 O HOH A 775 2.13 REMARK 500 OE1 GLN A 327 O HOH A 503 2.13 REMARK 500 O HOH A 827 O HOH A 844 2.14 REMARK 500 NE1 TRP A 85 O HOH A 504 2.15 REMARK 500 O HOH A 731 O HOH A 777 2.17 REMARK 500 O HOH A 530 O HOH A 879 2.17 REMARK 500 O HOH A 853 O HOH A 987 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 639 O HOH A 639 8555 1.92 REMARK 500 O HOH A 853 O HOH A 858 8555 2.05 REMARK 500 O2 GOL A 402 O3 GOL A 402 15545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 176 CG MET A 176 SD -0.265 REMARK 500 GLU A 177 CG GLU A 177 CD -0.124 REMARK 500 GLU A 177 CD GLU A 177 OE1 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 176 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 MET A 176 CA - CB - CG ANGL. DEV. = -19.3 DEGREES REMARK 500 MET A 176 CG - SD - CE ANGL. DEV. = 18.6 DEGREES REMARK 500 GLU A 177 CB - CG - CD ANGL. DEV. = 20.1 DEGREES REMARK 500 GLU A 177 CG - CD - OE2 ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 22 -52.53 72.95 REMARK 500 LYS A 26 -94.53 -136.29 REMARK 500 PHE A 84 -48.55 -173.26 REMARK 500 ASP A 226 75.85 -100.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 175 MET A 176 -149.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 993 DISTANCE = 6.03 ANGSTROMS DBREF1 8HW0 A 1 329 UNP A0A6B8QIS5_9HYPH DBREF2 8HW0 A A0A6B8QIS5 1 329 SEQRES 1 A 329 MET GLU TYR ARG ARG LEU GLY LYS SER GLY LEU LYS VAL SEQRES 2 A 329 SER GLU PHE SER PHE GLY SER TRP VAL THR PHE GLY LYS SEQRES 3 A 329 GLN VAL ASP GLY GLY ASP ALA LYS THR LEU MET GLN ALA SEQRES 4 A 329 ALA TYR ASP ALA GLY ILE ASN PHE PHE ASP ASN ALA GLU SEQRES 5 A 329 GLY TYR GLU GLN GLY ASN SER GLU ALA LEU MET GLY ALA SEQRES 6 A 329 ALA LEU LYS GLU LEU GLY TRP ASP ARG ASP SER TYR ILE SEQRES 7 A 329 VAL SER SER LYS VAL PHE TRP GLY GLY SER LYS PRO THR SEQRES 8 A 329 GLN LYS GLY LEU SER ARG LYS HIS VAL THR ASP ALA CYS SEQRES 9 A 329 ASN ALA ALA LEU LYS ARG LEU GLN VAL ASP TYR LEU ASP SEQRES 10 A 329 LEU TYR PHE CYS HIS ARG PRO ASP VAL ASP THR PRO ILE SEQRES 11 A 329 GLU GLU THR VAL ARG ALA MET ASP ALA LEU ILE THR GLN SEQRES 12 A 329 GLY LYS ILE LEU TYR TRP GLY THR SER GLU TRP ASN ALA SEQRES 13 A 329 GLN GLN LEU THR GLU ALA TYR GLY VAL ALA ARG ALA TYR SEQRES 14 A 329 GLY LEU THR PRO PRO THR MET GLU GLN PRO GLN TYR ASN SEQRES 15 A 329 ILE LEU GLU ARG ARG LYS VAL GLU GLY ASP PHE LEU PRO SEQRES 16 A 329 LEU TYR GLU LEU PHE GLY LEU GLY THR THR ILE TRP SER SEQRES 17 A 329 PRO LEU ALA SER GLY ILE LEU THR GLY LYS TYR LEU GLU SEQRES 18 A 329 GLY ILE PRO ASN ASP SER ARG LEU ASN LEU PRO GLY TYR SEQRES 19 A 329 GLU TRP LEU LYS GLU ARG TRP SER THR PRO ASP GLY ARG SEQRES 20 A 329 GLU LYS GLN ALA GLN VAL ARG GLU LEU ALA ASP LEU ALA SEQRES 21 A 329 LYS GLU LEU GLY ILE SER LEU THR HIS LEU SER LEU LEU SEQRES 22 A 329 TRP CYS LEU ALA ASN PRO HIS VAL SER THR VAL ILE LEU SEQRES 23 A 329 GLY ALA SER ARG LEU SER GLN LEU GLU ASP ASN LEU ALA SEQRES 24 A 329 ALA LEU ALA HIS LYS ASP LYS VAL THR PRO GLU VAL MET SEQRES 25 A 329 ALA ARG ILE ASP GLU ILE VAL GLY ASN LYS PRO ALA GLY SEQRES 26 A 329 PRO GLN ARG PHE HET GOL A 401 6 HET GOL A 402 6 HET NAP A 403 48 HETNAM GOL GLYCEROL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 HOH *493(H2 O) HELIX 1 AA1 ASP A 29 ALA A 43 1 15 HELIX 2 AA2 GLY A 53 GLN A 56 5 4 HELIX 3 AA3 GLY A 57 GLY A 71 1 15 HELIX 4 AA4 ASP A 73 TYR A 77 5 5 HELIX 5 AA5 LYS A 89 LYS A 93 5 5 HELIX 6 AA6 SER A 96 GLN A 112 1 17 HELIX 7 AA7 PRO A 129 GLN A 143 1 15 HELIX 8 AA8 ASN A 155 GLY A 170 1 16 HELIX 9 AA9 ARG A 186 GLY A 191 1 6 HELIX 10 AB1 PHE A 193 GLY A 201 1 9 HELIX 11 AB2 LEU A 210 GLY A 217 5 8 HELIX 12 AB3 SER A 227 LEU A 231 5 5 HELIX 13 AB4 TYR A 234 THR A 243 1 10 HELIX 14 AB5 THR A 243 GLY A 264 1 22 HELIX 15 AB6 SER A 266 ALA A 277 1 12 HELIX 16 AB7 ARG A 290 ALA A 299 1 10 HELIX 17 AB8 ALA A 300 VAL A 307 5 8 HELIX 18 AB9 THR A 308 GLY A 320 1 13 SHEET 1 AA1 2 TYR A 3 ARG A 5 0 SHEET 2 AA1 2 LYS A 12 SER A 14 -1 O VAL A 13 N ARG A 4 SHEET 1 AA2 9 PHE A 16 GLY A 19 0 SHEET 2 AA2 9 PHE A 47 ASP A 49 1 O ASP A 49 N PHE A 18 SHEET 3 AA2 9 ILE A 78 VAL A 83 1 O ILE A 78 N PHE A 48 SHEET 4 AA2 9 LEU A 116 CYS A 121 1 O PHE A 120 N VAL A 83 SHEET 5 AA2 9 ILE A 146 THR A 151 1 O GLY A 150 N CYS A 121 SHEET 6 AA2 9 MET A 176 GLU A 177 1 O MET A 176 N THR A 151 SHEET 7 AA2 9 GLY A 203 ILE A 206 1 O THR A 205 N GLU A 177 SHEET 8 AA2 9 THR A 283 LEU A 286 1 O THR A 283 N ILE A 206 SHEET 9 AA2 9 PHE A 16 GLY A 19 1 N SER A 17 O VAL A 284 CRYST1 157.650 157.650 111.259 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008988 0.00000