HEADER SIGNALING PROTEIN 30-DEC-22 8HWI TITLE BACTERIAL STING FROM LARKINELLA ARBORICOLA IN COMPLEX WITH 3'3'-C-DI- TITLE 2 GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD-NTASE-ASSOCIATED PROTEIN 12; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: NAD(+) HYDROLASE,TIR-STING; COMPND 5 EC: 3.2.2.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LARKINELLA ARBORICOLA; SOURCE 3 ORGANISM_TAXID: 643671; SOURCE 4 GENE: LX87_05200; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CD-NTASE-ASSOCIATED PROTEIN 12, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.WANG,C.-S.YANG,M.-H.HOU,Y.CHEN REVDAT 2 24-JAN-24 8HWI 1 JRNL REVDAT 1 03-JAN-24 8HWI 0 JRNL AUTH M.H.HOU,Y.C.WANG,C.S.YANG,K.F.LIAO,J.W.CHANG,O.SHIH,Y.Q.YEH, JRNL AUTH 2 M.K.SRIRAMOJU,T.W.WENG,U.S.JENG,S.D.HSU,Y.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO THE REGULATION, LIGAND RECOGNITION, JRNL TITL 2 AND OLIGOMERIZATION OF BACTERIAL STING. JRNL REF NAT COMMUN V. 14 8519 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 38129386 JRNL DOI 10.1038/S41467-023-44052-X REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 25497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 822 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 38.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.467 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9166 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 8724 ; 0.033 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12434 ; 1.286 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20121 ; 2.184 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1040 ; 6.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 492 ;31.733 ;22.927 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1680 ;16.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;14.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1268 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10082 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2186 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4178 ; 4.183 ; 5.904 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4177 ; 4.176 ; 5.904 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5212 ; 7.095 ; 8.854 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5213 ; 7.095 ; 8.854 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4988 ; 3.802 ; 6.271 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4986 ; 3.802 ; 6.272 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7223 ; 6.485 ; 9.201 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10178 ;11.235 ;64.856 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10168 ;11.236 ;64.870 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8HWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 07A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE PH 7.5, 0.1 M SODIUM REMARK 280 CHLORIDE, 20% V/V JEFFAMINE ED-2001 PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.99350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.53300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.24450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 115.53300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.99350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.24450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 155 REMARK 465 GLY A 156 REMARK 465 GLY A 157 REMARK 465 MET A 158 REMARK 465 GLY C 155 REMARK 465 GLY C 156 REMARK 465 GLY C 157 REMARK 465 MET C 158 REMARK 465 GLY D 155 REMARK 465 GLY D 156 REMARK 465 GLY D 157 REMARK 465 MET D 158 REMARK 465 GLY E 155 REMARK 465 GLY E 156 REMARK 465 GLY E 157 REMARK 465 MET E 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 177 -68.49 -142.28 REMARK 500 ASN A 187 -71.76 -102.33 REMARK 500 THR A 200 8.04 -68.94 REMARK 500 GLU A 263 -112.17 55.12 REMARK 500 ASN B 160 60.54 -107.55 REMARK 500 PHE B 177 -70.78 -143.15 REMARK 500 GLU B 263 -111.20 55.04 REMARK 500 THR B 320 -118.40 -120.78 REMARK 500 PHE C 177 -77.48 -146.34 REMARK 500 ASN C 187 30.19 -99.43 REMARK 500 GLN C 188 6.72 56.48 REMARK 500 GLU C 263 -126.42 61.50 REMARK 500 PRO C 273 97.69 -68.38 REMARK 500 PHE D 177 -69.55 -143.52 REMARK 500 THR D 238 -158.60 -106.56 REMARK 500 GLU D 263 -130.00 51.16 REMARK 500 ASP D 264 45.81 -101.99 REMARK 500 PRO D 273 99.62 -68.09 REMARK 500 THR D 320 -119.61 -120.89 REMARK 500 PHE E 177 -73.12 -146.98 REMARK 500 ASN E 237 58.65 -64.88 REMARK 500 GLU E 263 -125.25 56.41 REMARK 500 PHE F 159 -120.38 55.08 REMARK 500 PHE F 177 -74.05 -139.27 REMARK 500 LEU F 195 -70.62 -86.12 REMARK 500 ASN F 237 45.75 -109.87 REMARK 500 GLU F 263 -129.20 60.61 REMARK 500 PRO F 273 98.27 -68.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 562 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 563 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 9.63 ANGSTROMS REMARK 525 HOH B 448 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 449 DISTANCE = 8.28 ANGSTROMS REMARK 525 HOH B 450 DISTANCE = 9.11 ANGSTROMS REMARK 525 HOH C 420 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH C 421 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH D 534 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH D 535 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH D 536 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH D 537 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH E 430 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH E 431 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH E 432 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH E 433 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH E 434 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH F 534 DISTANCE = 7.45 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8HYN RELATED DB: PDB REMARK 900 RELATED ID: 8HY9 RELATED DB: PDB REMARK 900 RELATED ID: 8HY8 RELATED DB: PDB REMARK 900 RELATED ID: 8HWJ RELATED DB: PDB DBREF1 8HWI A 159 331 UNP A0A327WNX5_LARAB DBREF2 8HWI A A0A327WNX5 159 331 DBREF1 8HWI B 159 331 UNP A0A327WNX5_LARAB DBREF2 8HWI B A0A327WNX5 159 331 DBREF1 8HWI C 159 331 UNP A0A327WNX5_LARAB DBREF2 8HWI C A0A327WNX5 159 331 DBREF1 8HWI D 159 331 UNP A0A327WNX5_LARAB DBREF2 8HWI D A0A327WNX5 159 331 DBREF1 8HWI E 159 331 UNP A0A327WNX5_LARAB DBREF2 8HWI E A0A327WNX5 159 331 DBREF1 8HWI F 159 331 UNP A0A327WNX5_LARAB DBREF2 8HWI F A0A327WNX5 159 331 SEQADV 8HWI GLY A 155 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY A 156 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY A 157 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI MET A 158 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY B 155 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY B 156 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY B 157 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI MET B 158 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY C 155 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY C 156 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY C 157 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI MET C 158 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY D 155 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY D 156 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY D 157 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI MET D 158 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY E 155 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY E 156 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY E 157 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI MET E 158 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY F 155 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY F 156 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI GLY F 157 UNP A0A327WNX EXPRESSION TAG SEQADV 8HWI MET F 158 UNP A0A327WNX EXPRESSION TAG SEQRES 1 A 177 GLY GLY GLY MET PHE ASN TYR THR VAL LEU PRO SER THR SEQRES 2 A 177 SER LEU ALA VAL GLY TYR TYR TYR ASN PHE LEU ARG GLU SEQRES 3 A 177 ILE LEU GLU ALA PHE ASN ASN GLN LYS SER ILE GLN ILE SEQRES 4 A 177 ILE LEU GLU ARG ASP ARG THR GLY LYS PRO THR LYS THR SEQRES 5 A 177 ILE ASP TYR GLU ILE LYS LYS PRO TYR PRO THR ILE GLU SEQRES 6 A 177 ILE ARG VAL PRO GLN ASN LEU ALA SER LEU LYS LYS GLU SEQRES 7 A 177 VAL LEU THR TRP ASN THR SER GLU TYR LYS GLN ILE PHE SEQRES 8 A 177 ILE ASN ALA ALA SER ARG THR TYR PRO PHE PHE LEU GLN SEQRES 9 A 177 GLY GLU PHE LYS GLU ASP GLN ILE LEU SER ILE PHE ASP SEQRES 10 A 177 ILE PRO THR THR LEU TYR ALA SER TYR LEU THR ILE LYS SEQRES 11 A 177 GLU LEU PHE THR ASP SER PHE LEU LYS THR GLN ASN ASN SEQRES 12 A 177 GLU ARG LYS LEU ILE ASN LYS GLU ILE ARG ASN PHE GLU SEQRES 13 A 177 ARG THR LEU SER LYS LEU ILE ASP ASP THR ILE GLU GLU SEQRES 14 A 177 LYS PHE TYR LYS PHE THR ILE TYR SEQRES 1 B 177 GLY GLY GLY MET PHE ASN TYR THR VAL LEU PRO SER THR SEQRES 2 B 177 SER LEU ALA VAL GLY TYR TYR TYR ASN PHE LEU ARG GLU SEQRES 3 B 177 ILE LEU GLU ALA PHE ASN ASN GLN LYS SER ILE GLN ILE SEQRES 4 B 177 ILE LEU GLU ARG ASP ARG THR GLY LYS PRO THR LYS THR SEQRES 5 B 177 ILE ASP TYR GLU ILE LYS LYS PRO TYR PRO THR ILE GLU SEQRES 6 B 177 ILE ARG VAL PRO GLN ASN LEU ALA SER LEU LYS LYS GLU SEQRES 7 B 177 VAL LEU THR TRP ASN THR SER GLU TYR LYS GLN ILE PHE SEQRES 8 B 177 ILE ASN ALA ALA SER ARG THR TYR PRO PHE PHE LEU GLN SEQRES 9 B 177 GLY GLU PHE LYS GLU ASP GLN ILE LEU SER ILE PHE ASP SEQRES 10 B 177 ILE PRO THR THR LEU TYR ALA SER TYR LEU THR ILE LYS SEQRES 11 B 177 GLU LEU PHE THR ASP SER PHE LEU LYS THR GLN ASN ASN SEQRES 12 B 177 GLU ARG LYS LEU ILE ASN LYS GLU ILE ARG ASN PHE GLU SEQRES 13 B 177 ARG THR LEU SER LYS LEU ILE ASP ASP THR ILE GLU GLU SEQRES 14 B 177 LYS PHE TYR LYS PHE THR ILE TYR SEQRES 1 C 177 GLY GLY GLY MET PHE ASN TYR THR VAL LEU PRO SER THR SEQRES 2 C 177 SER LEU ALA VAL GLY TYR TYR TYR ASN PHE LEU ARG GLU SEQRES 3 C 177 ILE LEU GLU ALA PHE ASN ASN GLN LYS SER ILE GLN ILE SEQRES 4 C 177 ILE LEU GLU ARG ASP ARG THR GLY LYS PRO THR LYS THR SEQRES 5 C 177 ILE ASP TYR GLU ILE LYS LYS PRO TYR PRO THR ILE GLU SEQRES 6 C 177 ILE ARG VAL PRO GLN ASN LEU ALA SER LEU LYS LYS GLU SEQRES 7 C 177 VAL LEU THR TRP ASN THR SER GLU TYR LYS GLN ILE PHE SEQRES 8 C 177 ILE ASN ALA ALA SER ARG THR TYR PRO PHE PHE LEU GLN SEQRES 9 C 177 GLY GLU PHE LYS GLU ASP GLN ILE LEU SER ILE PHE ASP SEQRES 10 C 177 ILE PRO THR THR LEU TYR ALA SER TYR LEU THR ILE LYS SEQRES 11 C 177 GLU LEU PHE THR ASP SER PHE LEU LYS THR GLN ASN ASN SEQRES 12 C 177 GLU ARG LYS LEU ILE ASN LYS GLU ILE ARG ASN PHE GLU SEQRES 13 C 177 ARG THR LEU SER LYS LEU ILE ASP ASP THR ILE GLU GLU SEQRES 14 C 177 LYS PHE TYR LYS PHE THR ILE TYR SEQRES 1 D 177 GLY GLY GLY MET PHE ASN TYR THR VAL LEU PRO SER THR SEQRES 2 D 177 SER LEU ALA VAL GLY TYR TYR TYR ASN PHE LEU ARG GLU SEQRES 3 D 177 ILE LEU GLU ALA PHE ASN ASN GLN LYS SER ILE GLN ILE SEQRES 4 D 177 ILE LEU GLU ARG ASP ARG THR GLY LYS PRO THR LYS THR SEQRES 5 D 177 ILE ASP TYR GLU ILE LYS LYS PRO TYR PRO THR ILE GLU SEQRES 6 D 177 ILE ARG VAL PRO GLN ASN LEU ALA SER LEU LYS LYS GLU SEQRES 7 D 177 VAL LEU THR TRP ASN THR SER GLU TYR LYS GLN ILE PHE SEQRES 8 D 177 ILE ASN ALA ALA SER ARG THR TYR PRO PHE PHE LEU GLN SEQRES 9 D 177 GLY GLU PHE LYS GLU ASP GLN ILE LEU SER ILE PHE ASP SEQRES 10 D 177 ILE PRO THR THR LEU TYR ALA SER TYR LEU THR ILE LYS SEQRES 11 D 177 GLU LEU PHE THR ASP SER PHE LEU LYS THR GLN ASN ASN SEQRES 12 D 177 GLU ARG LYS LEU ILE ASN LYS GLU ILE ARG ASN PHE GLU SEQRES 13 D 177 ARG THR LEU SER LYS LEU ILE ASP ASP THR ILE GLU GLU SEQRES 14 D 177 LYS PHE TYR LYS PHE THR ILE TYR SEQRES 1 E 177 GLY GLY GLY MET PHE ASN TYR THR VAL LEU PRO SER THR SEQRES 2 E 177 SER LEU ALA VAL GLY TYR TYR TYR ASN PHE LEU ARG GLU SEQRES 3 E 177 ILE LEU GLU ALA PHE ASN ASN GLN LYS SER ILE GLN ILE SEQRES 4 E 177 ILE LEU GLU ARG ASP ARG THR GLY LYS PRO THR LYS THR SEQRES 5 E 177 ILE ASP TYR GLU ILE LYS LYS PRO TYR PRO THR ILE GLU SEQRES 6 E 177 ILE ARG VAL PRO GLN ASN LEU ALA SER LEU LYS LYS GLU SEQRES 7 E 177 VAL LEU THR TRP ASN THR SER GLU TYR LYS GLN ILE PHE SEQRES 8 E 177 ILE ASN ALA ALA SER ARG THR TYR PRO PHE PHE LEU GLN SEQRES 9 E 177 GLY GLU PHE LYS GLU ASP GLN ILE LEU SER ILE PHE ASP SEQRES 10 E 177 ILE PRO THR THR LEU TYR ALA SER TYR LEU THR ILE LYS SEQRES 11 E 177 GLU LEU PHE THR ASP SER PHE LEU LYS THR GLN ASN ASN SEQRES 12 E 177 GLU ARG LYS LEU ILE ASN LYS GLU ILE ARG ASN PHE GLU SEQRES 13 E 177 ARG THR LEU SER LYS LEU ILE ASP ASP THR ILE GLU GLU SEQRES 14 E 177 LYS PHE TYR LYS PHE THR ILE TYR SEQRES 1 F 177 GLY GLY GLY MET PHE ASN TYR THR VAL LEU PRO SER THR SEQRES 2 F 177 SER LEU ALA VAL GLY TYR TYR TYR ASN PHE LEU ARG GLU SEQRES 3 F 177 ILE LEU GLU ALA PHE ASN ASN GLN LYS SER ILE GLN ILE SEQRES 4 F 177 ILE LEU GLU ARG ASP ARG THR GLY LYS PRO THR LYS THR SEQRES 5 F 177 ILE ASP TYR GLU ILE LYS LYS PRO TYR PRO THR ILE GLU SEQRES 6 F 177 ILE ARG VAL PRO GLN ASN LEU ALA SER LEU LYS LYS GLU SEQRES 7 F 177 VAL LEU THR TRP ASN THR SER GLU TYR LYS GLN ILE PHE SEQRES 8 F 177 ILE ASN ALA ALA SER ARG THR TYR PRO PHE PHE LEU GLN SEQRES 9 F 177 GLY GLU PHE LYS GLU ASP GLN ILE LEU SER ILE PHE ASP SEQRES 10 F 177 ILE PRO THR THR LEU TYR ALA SER TYR LEU THR ILE LYS SEQRES 11 F 177 GLU LEU PHE THR ASP SER PHE LEU LYS THR GLN ASN ASN SEQRES 12 F 177 GLU ARG LYS LEU ILE ASN LYS GLU ILE ARG ASN PHE GLU SEQRES 13 F 177 ARG THR LEU SER LYS LEU ILE ASP ASP THR ILE GLU GLU SEQRES 14 F 177 LYS PHE TYR LYS PHE THR ILE TYR HET C2E A 400 46 HET C2E D 400 46 HET C2E F 400 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 7 C2E 3(C20 H24 N10 O14 P2) FORMUL 10 HOH *240(H2 O) HELIX 1 AA1 LEU A 164 ASN A 176 1 13 HELIX 2 AA2 PHE A 177 LYS A 189 1 13 HELIX 3 AA3 ASN A 225 ALA A 227 5 3 HELIX 4 AA4 SER A 228 TRP A 236 1 9 HELIX 5 AA5 PRO A 273 THR A 275 5 3 HELIX 6 AA6 LEU A 276 PHE A 287 1 12 HELIX 7 AA7 THR A 288 LYS A 293 1 6 HELIX 8 AA8 ASN A 296 THR A 320 1 25 HELIX 9 AA9 LEU B 164 ASN B 176 1 13 HELIX 10 AB1 PHE B 177 ASN B 187 1 11 HELIX 11 AB2 ASN B 225 ALA B 227 5 3 HELIX 12 AB3 SER B 228 TRP B 236 1 9 HELIX 13 AB4 PRO B 273 THR B 275 5 3 HELIX 14 AB5 LEU B 276 PHE B 287 1 12 HELIX 15 AB6 THR B 288 GLN B 295 1 8 HELIX 16 AB7 ASN B 296 ASP B 319 1 24 HELIX 17 AB8 LEU C 164 ASN C 176 1 13 HELIX 18 AB9 PHE C 177 ASN C 186 1 10 HELIX 19 AC1 ASN C 225 ALA C 227 5 3 HELIX 20 AC2 SER C 228 TRP C 236 1 9 HELIX 21 AC3 PRO C 273 THR C 275 5 3 HELIX 22 AC4 LEU C 276 PHE C 287 1 12 HELIX 23 AC5 THR C 288 LYS C 293 1 6 HELIX 24 AC6 ASN C 296 ILE C 317 1 22 HELIX 25 AC7 LEU D 164 PHE D 177 1 14 HELIX 26 AC8 PHE D 177 ASN D 187 1 11 HELIX 27 AC9 ASN D 225 ALA D 227 5 3 HELIX 28 AD1 SER D 228 VAL D 233 1 6 HELIX 29 AD2 THR D 275 PHE D 287 1 13 HELIX 30 AD3 THR D 288 LYS D 293 1 6 HELIX 31 AD4 ASN D 296 ASP D 319 1 24 HELIX 32 AD5 LEU E 164 ASN E 176 1 13 HELIX 33 AD6 PHE E 177 ASN E 186 1 10 HELIX 34 AD7 ASN E 225 ALA E 227 5 3 HELIX 35 AD8 SER E 228 VAL E 233 1 6 HELIX 36 AD9 PRO E 273 THR E 275 5 3 HELIX 37 AE1 LEU E 276 PHE E 287 1 12 HELIX 38 AE2 THR E 288 LYS E 293 1 6 HELIX 39 AE3 ASN E 296 ILE E 321 1 26 HELIX 40 AE4 LEU F 164 PHE F 177 1 14 HELIX 41 AE5 PHE F 177 ASN F 187 1 11 HELIX 42 AE6 ASN F 225 ALA F 227 5 3 HELIX 43 AE7 SER F 228 TRP F 236 1 9 HELIX 44 AE8 PRO F 273 THR F 275 5 3 HELIX 45 AE9 LEU F 276 PHE F 287 1 12 HELIX 46 AF1 THR F 288 LYS F 293 1 6 HELIX 47 AF2 ASN F 296 ILE F 317 1 22 SHEET 1 AA1 7 PRO A 203 GLU A 210 0 SHEET 2 AA1 7 SER A 190 ARG A 197 -1 N LEU A 195 O LYS A 205 SHEET 3 AA1 7 TYR A 241 ILE A 246 -1 O PHE A 245 N GLN A 192 SHEET 4 AA1 7 PHE A 255 LYS A 262 -1 O LEU A 257 N ILE A 244 SHEET 5 AA1 7 GLN A 265 ASP A 271 -1 O GLN A 265 N LYS A 262 SHEET 6 AA1 7 ILE A 218 VAL A 222 1 N GLU A 219 O ILE A 269 SHEET 7 AA1 7 TYR A 326 ILE A 330 1 O LYS A 327 N ILE A 220 SHEET 1 AA2 7 PRO B 203 TYR B 209 0 SHEET 2 AA2 7 ILE B 191 ARG B 197 -1 N ILE B 193 O ILE B 207 SHEET 3 AA2 7 TYR B 241 ILE B 246 -1 O PHE B 245 N GLN B 192 SHEET 4 AA2 7 PHE B 255 LYS B 262 -1 O GLY B 259 N LYS B 242 SHEET 5 AA2 7 GLN B 265 ASP B 271 -1 O PHE B 270 N GLN B 258 SHEET 6 AA2 7 ILE B 218 VAL B 222 1 N GLU B 219 O ILE B 269 SHEET 7 AA2 7 TYR B 326 ILE B 330 1 O LYS B 327 N ILE B 220 SHEET 1 AA3 7 LYS C 205 TYR C 209 0 SHEET 2 AA3 7 ILE C 191 GLU C 196 -1 N ILE C 193 O ILE C 207 SHEET 3 AA3 7 TYR C 241 ILE C 246 -1 O PHE C 245 N GLN C 192 SHEET 4 AA3 7 PHE C 255 PHE C 261 -1 O PHE C 255 N ILE C 246 SHEET 5 AA3 7 ILE C 266 ASP C 271 -1 O LEU C 267 N GLU C 260 SHEET 6 AA3 7 ILE C 218 PRO C 223 1 N ARG C 221 O ASP C 271 SHEET 7 AA3 7 TYR C 326 TYR C 331 1 O LYS C 327 N ILE C 220 SHEET 1 AA4 7 PRO D 203 TYR D 209 0 SHEET 2 AA4 7 ILE D 191 ARG D 197 -1 N ILE D 193 O ILE D 207 SHEET 3 AA4 7 TYR D 241 ILE D 246 -1 O GLN D 243 N ILE D 194 SHEET 4 AA4 7 PHE D 255 LYS D 262 -1 O PHE D 255 N ILE D 246 SHEET 5 AA4 7 GLN D 265 ASP D 271 -1 O SER D 268 N GLU D 260 SHEET 6 AA4 7 THR D 217 VAL D 222 1 N GLU D 219 O ILE D 269 SHEET 7 AA4 7 TYR D 326 ILE D 330 1 O LYS D 327 N ILE D 220 SHEET 1 AA5 7 PRO E 203 TYR E 209 0 SHEET 2 AA5 7 ILE E 191 ARG E 197 -1 N GLU E 196 O THR E 204 SHEET 3 AA5 7 TYR E 241 ILE E 246 -1 O GLN E 243 N ILE E 194 SHEET 4 AA5 7 PHE E 255 LYS E 262 -1 O LEU E 257 N ILE E 244 SHEET 5 AA5 7 GLN E 265 ASP E 271 -1 O SER E 268 N GLU E 260 SHEET 6 AA5 7 ILE E 218 VAL E 222 1 N GLU E 219 O ILE E 269 SHEET 7 AA5 7 TYR E 326 ILE E 330 1 O THR E 329 N ILE E 220 SHEET 1 AA6 7 PRO F 203 TYR F 209 0 SHEET 2 AA6 7 ILE F 191 ARG F 197 -1 N ILE F 193 O ILE F 207 SHEET 3 AA6 7 TYR F 241 ILE F 246 -1 O PHE F 245 N GLN F 192 SHEET 4 AA6 7 PHE F 255 LYS F 262 -1 O LEU F 257 N ILE F 244 SHEET 5 AA6 7 GLN F 265 ASP F 271 -1 O LEU F 267 N GLU F 260 SHEET 6 AA6 7 ILE F 218 VAL F 222 1 N ARG F 221 O ASP F 271 SHEET 7 AA6 7 TYR F 326 ILE F 330 1 O LYS F 327 N ILE F 220 CRYST1 67.987 72.489 231.066 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004328 0.00000