HEADER SIGNALING PROTEIN 06-JAN-23 8HY9 TITLE BACTERIAL STING FROM RIEMERELLA ANATIPESTIFER IN COMPLEX WITH 3'3'-C- TITLE 2 DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD-NTASE-ASSOCIATED PROTEIN 12; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAD(+) HYDROLASE,TIR-STING; COMPND 5 EC: 3.2.2.5; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: (1) THE FIRST FOUR AA, SGGG, IS A LINKER. (2) THE COMPND 8 FIFTH AA, PHE5, SHOULD BE INDEXED AS PHE158. THANK YOU VERY MUCH! SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RIEMERELLA ANATIPESTIFER YB2; SOURCE 3 ORGANISM_TAXID: 1455062; SOURCE 4 GENE: KYF39_09390; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CD-NTASE-ASSOCIATED PROTEIN 12, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.WANG,C.-S.YANG,M.-H.HOU,Y.CHEN REVDAT 2 24-JAN-24 8HY9 1 JRNL REVDAT 1 10-JAN-24 8HY9 0 JRNL AUTH M.H.HOU,Y.C.WANG,C.S.YANG,K.F.LIAO,J.W.CHANG,O.SHIH,Y.Q.YEH, JRNL AUTH 2 M.K.SRIRAMOJU,T.W.WENG,U.S.JENG,S.D.HSU,Y.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO THE REGULATION, LIGAND RECOGNITION, JRNL TITL 2 AND OLIGOMERIZATION OF BACTERIAL STING. JRNL REF NAT COMMUN V. 14 8519 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 38129386 JRNL DOI 10.1038/S41467-023-44052-X REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 24109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.056 REMARK 3 FREE R VALUE TEST SET COUNT : 1219 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1383 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20400 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.01400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.272 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1362 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1269 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1859 ; 1.437 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2925 ; 1.370 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 6.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;29.234 ;24.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 233 ;12.417 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;19.300 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 191 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1522 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 308 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 262 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 69 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 661 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.066 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 635 ; 1.768 ; 1.538 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 634 ; 1.760 ; 1.537 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 792 ; 2.701 ; 2.304 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 793 ; 2.703 ; 2.306 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 727 ; 2.954 ; 1.882 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 725 ; 2.958 ; 1.884 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1067 ; 4.475 ; 2.679 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1068 ; 4.473 ; 2.678 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8HY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 07A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2270 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7EBD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2 M CALCIUM REMARK 280 CHLORIDE DIHYDRATE, 40 % V/V PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.75500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.75500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -9.39323 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.95594 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 18 -60.04 -143.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 151 O REMARK 620 2 ASN A 151 OD1 71.3 REMARK 620 3 ILE A 154 O 77.8 149.0 REMARK 620 4 HOH A 318 O 145.8 124.6 80.7 REMARK 620 5 HOH A 376 O 136.2 76.5 131.0 77.6 REMARK 620 6 HOH A 379 O 79.1 97.1 79.6 122.7 76.3 REMARK 620 7 HOH A 394 O 85.0 78.7 96.1 71.1 116.9 164.0 REMARK 620 N 1 2 3 4 5 6 DBREF1 8HY9 A 5 163 UNP A0A8F6THR5_RIEAN DBREF2 8HY9 A A0A8F6THR5 158 316 SEQADV 8HY9 SER A 1 UNP A0A8F6THR EXPRESSION TAG SEQADV 8HY9 GLY A 2 UNP A0A8F6THR EXPRESSION TAG SEQADV 8HY9 GLY A 3 UNP A0A8F6THR EXPRESSION TAG SEQADV 8HY9 GLY A 4 UNP A0A8F6THR EXPRESSION TAG SEQRES 1 A 163 SER GLY GLY GLY PHE PRO SER SER THR LEU ALA ALA VAL SEQRES 2 A 163 TYR TYR GLU ASN PHE VAL LYS PRO THR CYS LEU HIS ILE SEQRES 3 A 163 ILE GLN ASN GLY GLY ILE GLN ASP ASP ASP GLY THR LYS SEQRES 4 A 163 TYR GLU ASN SER THR ILE LYS ILE ILE ILE PRO GLN LYS SEQRES 5 A 163 LEU THR THR ASP VAL ASN SER GLN PHE GLN THR LEU LYS SEQRES 6 A 163 LYS SER PHE GLN THR LYS LYS LEU THR PHE ASP TYR LEU SEQRES 7 A 163 GLY ARG PRO ARG ASN ILE ASP VAL GLU THR LEU ILE GLN SEQRES 8 A 163 ASP GLY LYS LEU TYR VAL ILE ASP PHE PRO THR VAL LEU SEQRES 9 A 163 SER GLY ILE ASN TYR ALA ILE SER ASN LEU LEU PRO ASN SEQRES 10 A 163 ASP PHE ASN SER MET SER ASP ASP TYR GLU LEU ILE LEU SEQRES 11 A 163 ASN ARG GLU PHE ASP ARG PHE ILE TYR THR LEU ASN LYS SEQRES 12 A 163 LEU ALA LEU ARG ASP GLY TYR ASN ASN LEU ILE THR VAL SEQRES 13 A 163 ILE ASN GLU LYS ASP ILE LYS HET C2E A 201 46 HET CA A 202 1 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM CA CALCIUM ION HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 2 C2E C20 H24 N10 O14 P2 FORMUL 3 CA CA 2+ FORMUL 4 HOH *124(H2 O) HELIX 1 AA1 PHE A 5 PHE A 18 1 14 HELIX 2 AA2 PHE A 18 GLY A 30 1 13 HELIX 3 AA3 ASP A 56 GLN A 69 1 14 HELIX 4 AA4 PRO A 101 VAL A 103 5 3 HELIX 5 AA5 LEU A 104 SER A 112 1 9 HELIX 6 AA6 ASN A 113 LEU A 115 5 3 HELIX 7 AA7 SER A 123 GLY A 149 1 27 HELIX 8 AA8 TYR A 150 ASN A 152 5 3 HELIX 9 AA9 LYS A 160 ILE A 162 5 3 SHEET 1 AA1 2 ILE A 32 GLN A 33 0 SHEET 2 AA1 2 LYS A 39 TYR A 40 -1 O TYR A 40 N ILE A 32 SHEET 1 AA2 5 LYS A 71 PHE A 75 0 SHEET 2 AA2 5 ILE A 84 GLN A 91 -1 O ILE A 84 N PHE A 75 SHEET 3 AA2 5 LYS A 94 ASP A 99 -1 O TYR A 96 N LEU A 89 SHEET 4 AA2 5 SER A 43 ILE A 49 1 N LYS A 46 O VAL A 97 SHEET 5 AA2 5 ILE A 154 ASN A 158 1 O THR A 155 N ILE A 47 LINK O ASN A 151 CA CA A 202 1555 1555 2.41 LINK OD1 ASN A 151 CA CA A 202 1555 1555 2.40 LINK O ILE A 154 CA CA A 202 1555 1555 2.31 LINK CA CA A 202 O HOH A 318 1555 4446 2.46 LINK CA CA A 202 O HOH A 376 1555 1555 2.38 LINK CA CA A 202 O HOH A 379 1555 1555 2.34 LINK CA CA A 202 O HOH A 394 1555 1555 2.43 CRYST1 99.510 40.990 36.196 90.00 105.04 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010049 0.000000 0.002700 0.00000 SCALE2 0.000000 0.024396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028607 0.00000