HEADER OXIDOREDUCTASE 06-JAN-23 8HYE TITLE STRUCTURE OF AMINO ACID DEHYDROGENASE-2752 WITH LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE DEHYDROGENASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 1462; SOURCE 4 GENE: GK2752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, AMINO ACID, ROSSMANN FOLD, NAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SAKURABA,T.OHSHIMA REVDAT 2 12-APR-23 8HYE 1 JRNL REVDAT 1 05-APR-23 8HYE 0 JRNL AUTH M.MAENO,T.OHMORI,D.NUKADA,H.SAKURABA,T.SATOMURA,T.OHSHIMA JRNL TITL TWO DIFFERENT ALANINE DEHYDROGENASES FROM GEOBACILLUS JRNL TITL 2 KAUSTOPHILUS: THEIR BIOCHEMICAL CHARACTERISTICS AND JRNL TITL 3 DIFFERENTIAL EXPRESSION IN VEGETATIVE CELLS AND SPORES. JRNL REF BIOCHIM BIOPHYS ACTA V.1871 40904 2023 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 36918121 JRNL DOI 10.1016/J.BBAPAP.2023.140904 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 84971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4494 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 555 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.12000 REMARK 3 B22 (A**2) : -1.12000 REMARK 3 B33 (A**2) : 3.65000 REMARK 3 B12 (A**2) : -0.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.957 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8538 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 8149 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11631 ; 1.815 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18856 ; 1.376 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1099 ; 7.377 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 357 ;37.124 ;23.025 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1381 ;14.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.058 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1167 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9467 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1629 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4411 ; 3.602 ; 4.233 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4410 ; 3.590 ; 4.232 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5505 ; 5.030 ; 6.334 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5506 ; 5.030 ; 6.336 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4127 ; 4.889 ; 4.784 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4128 ; 4.889 ; 4.784 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6127 ; 6.907 ; 7.015 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9451 ; 8.697 ;52.099 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9353 ; 8.696 ;52.007 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8HYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-PROPANOL, PEG 4000, HEPES BUFFER, REMARK 280 NAD, PYRUVATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.82400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.64800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.82400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.64800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.82400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 105.64800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.82400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 105.64800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 194.60100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1289 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 240 REMARK 465 PRO A 241 REMARK 465 GLY A 242 REMARK 465 ALA A 243 REMARK 465 LYS A 244 REMARK 465 GLY A 372 REMARK 465 ILE B 240 REMARK 465 PRO B 241 REMARK 465 GLY B 242 REMARK 465 ALA B 243 REMARK 465 GLY B 372 REMARK 465 GLY C 372 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS C 95 62.73 30.34 REMARK 500 ALA C 99 77.67 -154.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1313 DISTANCE = 5.94 ANGSTROMS DBREF 8HYE A 1 372 UNP Q5KW99 Q5KW99_GEOKA 1 372 DBREF 8HYE B 1 372 UNP Q5KW99 Q5KW99_GEOKA 1 372 DBREF 8HYE C 1 372 UNP Q5KW99 Q5KW99_GEOKA 1 372 SEQRES 1 A 372 MET LYS ILE GLY ILE PRO LYS GLU ILE LYS ASN ASN GLU SEQRES 2 A 372 ASN ARG VAL ALA ILE THR PRO ALA GLY VAL MET THR LEU SEQRES 3 A 372 VAL LYS ALA GLY HIS ASP VAL TYR VAL GLU THR GLU ALA SEQRES 4 A 372 GLY ALA GLY SER GLY PHE SER ASP SER GLU TYR GLU LYS SEQRES 5 A 372 ALA GLY ALA VAL ILE VAL THR LYS ALA GLU ASP ALA TRP SEQRES 6 A 372 ALA ALA GLU MET VAL LEU LYS VAL LYS GLU PRO LEU ALA SEQRES 7 A 372 GLU GLU PHE ARG TYR PHE ARG PRO GLY LEU ILE LEU PHE SEQRES 8 A 372 THR TYR LEU HIS LEU ALA ALA ALA GLU ALA LEU THR LYS SEQRES 9 A 372 ALA LEU VAL GLU GLN LYS VAL VAL GLY ILE ALA TYR GLU SEQRES 10 A 372 THR VAL GLN LEU ALA ASN GLY SER LEU PRO LEU LEU THR SEQRES 11 A 372 PRO MET SER GLU VAL ALA GLY ARG MET SER VAL GLN VAL SEQRES 12 A 372 GLY ALA GLN PHE LEU GLU LYS PRO HIS GLY GLY LYS GLY SEQRES 13 A 372 ILE LEU LEU GLY GLY VAL PRO GLY VAL ARG ARG GLY LYS SEQRES 14 A 372 VAL THR ILE ILE GLY GLY GLY THR ALA GLY THR ASN ALA SEQRES 15 A 372 ALA LYS ILE ALA VAL GLY LEU GLY ALA ASP VAL THR ILE SEQRES 16 A 372 LEU ASP ILE ASN ALA GLU ARG LEU ARG GLU LEU ASP ASP SEQRES 17 A 372 LEU PHE GLY ASP GLN VAL THR THR LEU MET SER ASN SER SEQRES 18 A 372 TYR HIS ILE ALA GLU CYS VAL ARG GLU SER ASP LEU VAL SEQRES 19 A 372 VAL GLY ALA VAL LEU ILE PRO GLY ALA LYS ALA PRO LYS SEQRES 20 A 372 LEU VAL THR GLU GLU MET VAL ARG SER MET THR PRO GLY SEQRES 21 A 372 SER VAL LEU VAL ASP VAL ALA ILE ASP GLN GLY GLY ILE SEQRES 22 A 372 PHE GLU THR THR ASP ARG VAL THR THR HIS ASP ASP PRO SEQRES 23 A 372 THR TYR VAL LYS HIS GLY VAL VAL HIS TYR ALA VAL ALA SEQRES 24 A 372 ASN MET PRO GLY ALA VAL PRO ARG THR SER THR PHE ALA SEQRES 25 A 372 LEU THR ASN VAL THR ILE PRO TYR ALA LEU GLN ILE ALA SEQRES 26 A 372 ASN LYS GLY TYR ARG ALA ALA CYS LEU ASP ASN PRO ALA SEQRES 27 A 372 LEU LEU LYS GLY ILE ASN THR LEU ASP GLY HIS ILE VAL SEQRES 28 A 372 TYR GLU ALA VAL ALA ALA ALA HIS ASN MET PRO TYR THR SEQRES 29 A 372 ASP VAL HIS SER LEU LEU GLN GLY SEQRES 1 B 372 MET LYS ILE GLY ILE PRO LYS GLU ILE LYS ASN ASN GLU SEQRES 2 B 372 ASN ARG VAL ALA ILE THR PRO ALA GLY VAL MET THR LEU SEQRES 3 B 372 VAL LYS ALA GLY HIS ASP VAL TYR VAL GLU THR GLU ALA SEQRES 4 B 372 GLY ALA GLY SER GLY PHE SER ASP SER GLU TYR GLU LYS SEQRES 5 B 372 ALA GLY ALA VAL ILE VAL THR LYS ALA GLU ASP ALA TRP SEQRES 6 B 372 ALA ALA GLU MET VAL LEU LYS VAL LYS GLU PRO LEU ALA SEQRES 7 B 372 GLU GLU PHE ARG TYR PHE ARG PRO GLY LEU ILE LEU PHE SEQRES 8 B 372 THR TYR LEU HIS LEU ALA ALA ALA GLU ALA LEU THR LYS SEQRES 9 B 372 ALA LEU VAL GLU GLN LYS VAL VAL GLY ILE ALA TYR GLU SEQRES 10 B 372 THR VAL GLN LEU ALA ASN GLY SER LEU PRO LEU LEU THR SEQRES 11 B 372 PRO MET SER GLU VAL ALA GLY ARG MET SER VAL GLN VAL SEQRES 12 B 372 GLY ALA GLN PHE LEU GLU LYS PRO HIS GLY GLY LYS GLY SEQRES 13 B 372 ILE LEU LEU GLY GLY VAL PRO GLY VAL ARG ARG GLY LYS SEQRES 14 B 372 VAL THR ILE ILE GLY GLY GLY THR ALA GLY THR ASN ALA SEQRES 15 B 372 ALA LYS ILE ALA VAL GLY LEU GLY ALA ASP VAL THR ILE SEQRES 16 B 372 LEU ASP ILE ASN ALA GLU ARG LEU ARG GLU LEU ASP ASP SEQRES 17 B 372 LEU PHE GLY ASP GLN VAL THR THR LEU MET SER ASN SER SEQRES 18 B 372 TYR HIS ILE ALA GLU CYS VAL ARG GLU SER ASP LEU VAL SEQRES 19 B 372 VAL GLY ALA VAL LEU ILE PRO GLY ALA LYS ALA PRO LYS SEQRES 20 B 372 LEU VAL THR GLU GLU MET VAL ARG SER MET THR PRO GLY SEQRES 21 B 372 SER VAL LEU VAL ASP VAL ALA ILE ASP GLN GLY GLY ILE SEQRES 22 B 372 PHE GLU THR THR ASP ARG VAL THR THR HIS ASP ASP PRO SEQRES 23 B 372 THR TYR VAL LYS HIS GLY VAL VAL HIS TYR ALA VAL ALA SEQRES 24 B 372 ASN MET PRO GLY ALA VAL PRO ARG THR SER THR PHE ALA SEQRES 25 B 372 LEU THR ASN VAL THR ILE PRO TYR ALA LEU GLN ILE ALA SEQRES 26 B 372 ASN LYS GLY TYR ARG ALA ALA CYS LEU ASP ASN PRO ALA SEQRES 27 B 372 LEU LEU LYS GLY ILE ASN THR LEU ASP GLY HIS ILE VAL SEQRES 28 B 372 TYR GLU ALA VAL ALA ALA ALA HIS ASN MET PRO TYR THR SEQRES 29 B 372 ASP VAL HIS SER LEU LEU GLN GLY SEQRES 1 C 372 MET LYS ILE GLY ILE PRO LYS GLU ILE LYS ASN ASN GLU SEQRES 2 C 372 ASN ARG VAL ALA ILE THR PRO ALA GLY VAL MET THR LEU SEQRES 3 C 372 VAL LYS ALA GLY HIS ASP VAL TYR VAL GLU THR GLU ALA SEQRES 4 C 372 GLY ALA GLY SER GLY PHE SER ASP SER GLU TYR GLU LYS SEQRES 5 C 372 ALA GLY ALA VAL ILE VAL THR LYS ALA GLU ASP ALA TRP SEQRES 6 C 372 ALA ALA GLU MET VAL LEU LYS VAL LYS GLU PRO LEU ALA SEQRES 7 C 372 GLU GLU PHE ARG TYR PHE ARG PRO GLY LEU ILE LEU PHE SEQRES 8 C 372 THR TYR LEU HIS LEU ALA ALA ALA GLU ALA LEU THR LYS SEQRES 9 C 372 ALA LEU VAL GLU GLN LYS VAL VAL GLY ILE ALA TYR GLU SEQRES 10 C 372 THR VAL GLN LEU ALA ASN GLY SER LEU PRO LEU LEU THR SEQRES 11 C 372 PRO MET SER GLU VAL ALA GLY ARG MET SER VAL GLN VAL SEQRES 12 C 372 GLY ALA GLN PHE LEU GLU LYS PRO HIS GLY GLY LYS GLY SEQRES 13 C 372 ILE LEU LEU GLY GLY VAL PRO GLY VAL ARG ARG GLY LYS SEQRES 14 C 372 VAL THR ILE ILE GLY GLY GLY THR ALA GLY THR ASN ALA SEQRES 15 C 372 ALA LYS ILE ALA VAL GLY LEU GLY ALA ASP VAL THR ILE SEQRES 16 C 372 LEU ASP ILE ASN ALA GLU ARG LEU ARG GLU LEU ASP ASP SEQRES 17 C 372 LEU PHE GLY ASP GLN VAL THR THR LEU MET SER ASN SER SEQRES 18 C 372 TYR HIS ILE ALA GLU CYS VAL ARG GLU SER ASP LEU VAL SEQRES 19 C 372 VAL GLY ALA VAL LEU ILE PRO GLY ALA LYS ALA PRO LYS SEQRES 20 C 372 LEU VAL THR GLU GLU MET VAL ARG SER MET THR PRO GLY SEQRES 21 C 372 SER VAL LEU VAL ASP VAL ALA ILE ASP GLN GLY GLY ILE SEQRES 22 C 372 PHE GLU THR THR ASP ARG VAL THR THR HIS ASP ASP PRO SEQRES 23 C 372 THR TYR VAL LYS HIS GLY VAL VAL HIS TYR ALA VAL ALA SEQRES 24 C 372 ASN MET PRO GLY ALA VAL PRO ARG THR SER THR PHE ALA SEQRES 25 C 372 LEU THR ASN VAL THR ILE PRO TYR ALA LEU GLN ILE ALA SEQRES 26 C 372 ASN LYS GLY TYR ARG ALA ALA CYS LEU ASP ASN PRO ALA SEQRES 27 C 372 LEU LEU LYS GLY ILE ASN THR LEU ASP GLY HIS ILE VAL SEQRES 28 C 372 TYR GLU ALA VAL ALA ALA ALA HIS ASN MET PRO TYR THR SEQRES 29 C 372 ASP VAL HIS SER LEU LEU GLN GLY HET NAD A1001 44 HET EDO A1002 4 HET EPE A1003 15 HET NAD B1001 44 HET NAD C1001 44 HET PO4 C1002 5 HET EDO C1003 4 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN EPE HEPES FORMUL 4 NAD 3(C21 H27 N7 O14 P2) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 9 PO4 O4 P 3- FORMUL 11 HOH *555(H2 O) HELIX 1 AA1 THR A 19 ALA A 29 1 11 HELIX 2 AA2 GLY A 40 GLY A 44 5 5 HELIX 3 AA3 SER A 46 ALA A 53 1 8 HELIX 4 AA4 LYS A 60 ALA A 66 1 7 HELIX 5 AA5 LEU A 77 PHE A 84 5 8 HELIX 6 AA6 HIS A 95 ALA A 98 5 4 HELIX 7 AA7 ALA A 99 GLN A 109 1 11 HELIX 8 AA8 GLU A 117 VAL A 119 5 3 HELIX 9 AA9 LEU A 129 LEU A 148 1 20 HELIX 10 AB1 GLU A 149 GLY A 153 5 5 HELIX 11 AB2 GLY A 176 GLY A 190 1 15 HELIX 12 AB3 ASN A 199 GLY A 211 1 13 HELIX 13 AB4 ASP A 212 VAL A 214 5 3 HELIX 14 AB5 ASN A 220 SER A 231 1 12 HELIX 15 AB6 THR A 250 SER A 256 1 7 HELIX 16 AB7 ALA A 267 GLY A 271 5 5 HELIX 17 AB8 ASN A 300 ALA A 304 5 5 HELIX 18 AB9 VAL A 305 ASN A 336 1 32 HELIX 19 AC1 ASN A 336 LYS A 341 1 6 HELIX 20 AC2 TYR A 352 HIS A 359 1 8 HELIX 21 AC3 ASP A 365 GLN A 371 1 7 HELIX 22 AC4 THR B 19 ALA B 29 1 11 HELIX 23 AC5 GLY B 40 GLY B 44 5 5 HELIX 24 AC6 SER B 46 ALA B 53 1 8 HELIX 25 AC7 LYS B 60 ALA B 66 1 7 HELIX 26 AC8 LEU B 77 PHE B 84 5 8 HELIX 27 AC9 HIS B 95 ALA B 98 5 4 HELIX 28 AD1 ALA B 99 GLN B 109 1 11 HELIX 29 AD2 GLU B 117 VAL B 119 5 3 HELIX 30 AD3 LEU B 129 GLU B 149 1 21 HELIX 31 AD4 LYS B 150 GLY B 153 5 4 HELIX 32 AD5 GLY B 176 LEU B 189 1 14 HELIX 33 AD6 ASN B 199 GLY B 211 1 13 HELIX 34 AD7 ASP B 212 VAL B 214 5 3 HELIX 35 AD8 ASN B 220 SER B 231 1 12 HELIX 36 AD9 THR B 250 MET B 257 1 8 HELIX 37 AE1 ALA B 267 GLY B 271 5 5 HELIX 38 AE2 ASN B 300 ALA B 304 5 5 HELIX 39 AE3 VAL B 305 GLY B 328 1 24 HELIX 40 AE4 GLY B 328 ASN B 336 1 9 HELIX 41 AE5 ASN B 336 LYS B 341 1 6 HELIX 42 AE6 TYR B 352 HIS B 359 1 8 HELIX 43 AE7 ASP B 365 GLN B 371 1 7 HELIX 44 AE8 THR C 19 ALA C 29 1 11 HELIX 45 AE9 GLY C 40 GLY C 44 5 5 HELIX 46 AF1 SER C 46 ALA C 53 1 8 HELIX 47 AF2 LYS C 60 ALA C 66 1 7 HELIX 48 AF3 LEU C 77 PHE C 84 5 8 HELIX 49 AF4 HIS C 95 ALA C 98 5 4 HELIX 50 AF5 ALA C 99 GLN C 109 1 11 HELIX 51 AF6 GLU C 117 VAL C 119 5 3 HELIX 52 AF7 LEU C 129 GLU C 149 1 21 HELIX 53 AF8 LYS C 150 GLY C 153 5 4 HELIX 54 AF9 GLY C 176 GLY C 190 1 15 HELIX 55 AG1 ASN C 199 GLY C 211 1 13 HELIX 56 AG2 ASP C 212 VAL C 214 5 3 HELIX 57 AG3 ASN C 220 GLU C 230 1 11 HELIX 58 AG4 THR C 250 SER C 256 1 7 HELIX 59 AG5 ALA C 267 GLY C 271 5 5 HELIX 60 AG6 ASN C 300 ALA C 304 5 5 HELIX 61 AG7 VAL C 305 ASN C 336 1 32 HELIX 62 AG8 ASN C 336 LYS C 341 1 6 HELIX 63 AG9 TYR C 352 HIS C 359 1 8 HELIX 64 AH1 ASP C 365 GLN C 371 1 7 SHEET 1 AA1 8 VAL A 56 VAL A 58 0 SHEET 2 AA1 8 ASP A 32 GLU A 36 1 N VAL A 33 O VAL A 56 SHEET 3 AA1 8 LYS A 2 ILE A 5 1 N ILE A 3 O TYR A 34 SHEET 4 AA1 8 MET A 69 LEU A 71 1 O MET A 69 N GLY A 4 SHEET 5 AA1 8 ILE A 89 THR A 92 1 O ILE A 89 N VAL A 70 SHEET 6 AA1 8 VAL A 112 ALA A 115 1 O ILE A 114 N LEU A 90 SHEET 7 AA1 8 ILE A 343 LEU A 346 -1 O ASN A 344 N GLY A 113 SHEET 8 AA1 8 HIS A 349 ILE A 350 -1 O HIS A 349 N LEU A 346 SHEET 1 AA2 7 THR A 215 MET A 218 0 SHEET 2 AA2 7 ASP A 192 ASP A 197 1 N VAL A 193 O THR A 215 SHEET 3 AA2 7 LYS A 169 ILE A 173 1 N VAL A 170 O ASP A 192 SHEET 4 AA2 7 LEU A 233 GLY A 236 1 O VAL A 235 N ILE A 173 SHEET 5 AA2 7 VAL A 262 ASP A 265 1 O VAL A 264 N GLY A 236 SHEET 6 AA2 7 VAL A 293 TYR A 296 1 O TYR A 296 N LEU A 263 SHEET 7 AA2 7 THR A 287 LYS A 290 -1 N TYR A 288 O HIS A 295 SHEET 1 AA3 8 VAL B 56 VAL B 58 0 SHEET 2 AA3 8 ASP B 32 GLU B 36 1 N VAL B 33 O VAL B 56 SHEET 3 AA3 8 LYS B 2 ILE B 5 1 N ILE B 3 O ASP B 32 SHEET 4 AA3 8 MET B 69 LEU B 71 1 O MET B 69 N GLY B 4 SHEET 5 AA3 8 ILE B 89 THR B 92 1 O ILE B 89 N VAL B 70 SHEET 6 AA3 8 VAL B 112 ALA B 115 1 O ILE B 114 N LEU B 90 SHEET 7 AA3 8 ILE B 343 LEU B 346 -1 O ASN B 344 N GLY B 113 SHEET 8 AA3 8 HIS B 349 ILE B 350 -1 O HIS B 349 N LEU B 346 SHEET 1 AA4 7 THR B 215 MET B 218 0 SHEET 2 AA4 7 ASP B 192 ASP B 197 1 N ILE B 195 O THR B 215 SHEET 3 AA4 7 LYS B 169 ILE B 173 1 N ILE B 172 O THR B 194 SHEET 4 AA4 7 LEU B 233 GLY B 236 1 O VAL B 235 N ILE B 173 SHEET 5 AA4 7 VAL B 262 ASP B 265 1 O VAL B 264 N GLY B 236 SHEET 6 AA4 7 VAL B 293 TYR B 296 1 O TYR B 296 N LEU B 263 SHEET 7 AA4 7 THR B 287 LYS B 290 -1 N TYR B 288 O HIS B 295 SHEET 1 AA5 7 VAL C 56 VAL C 58 0 SHEET 2 AA5 7 ASP C 32 GLU C 36 1 N VAL C 33 O VAL C 56 SHEET 3 AA5 7 LYS C 2 ILE C 5 1 N ILE C 3 O ASP C 32 SHEET 4 AA5 7 MET C 69 LEU C 71 1 O MET C 69 N GLY C 4 SHEET 5 AA5 7 ILE C 89 THR C 92 1 O ILE C 89 N VAL C 70 SHEET 6 AA5 7 VAL C 112 ALA C 115 1 O ILE C 114 N LEU C 90 SHEET 7 AA5 7 ILE C 343 THR C 345 -1 O ASN C 344 N GLY C 113 SHEET 1 AA6 7 THR C 215 MET C 218 0 SHEET 2 AA6 7 ASP C 192 ASP C 197 1 N ILE C 195 O THR C 215 SHEET 3 AA6 7 LYS C 169 ILE C 173 1 N ILE C 172 O LEU C 196 SHEET 4 AA6 7 LEU C 233 GLY C 236 1 O VAL C 235 N ILE C 173 SHEET 5 AA6 7 VAL C 262 ASP C 265 1 O VAL C 264 N GLY C 236 SHEET 6 AA6 7 VAL C 293 TYR C 296 1 O TYR C 296 N LEU C 263 SHEET 7 AA6 7 THR C 287 LYS C 290 -1 N TYR C 288 O HIS C 295 CRYST1 194.601 194.601 158.472 90.00 90.00 120.00 P 64 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005139 0.002967 0.000000 0.00000 SCALE2 0.000000 0.005934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006310 0.00000