HEADER RNA 09-JAN-23 8HZE TITLE A NEW FLUORESCENT RNA APTAMER BOUND WITH N COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (36-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-TP(DELTAI); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 905931 KEYWDS FLUORESCENT RNA APTAMER, RNA EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.HUANG,A.M.REN REVDAT 1 19-JUN-24 8HZE 0 JRNL AUTH K.HUANG,Q.SONG,M.FANG,D.YAO,X.SHEN,X.XU,X.CHEN,L.ZHU,Y.YANG, JRNL AUTH 2 A.REN JRNL TITL STRUCTURAL BASIS OF A SMALL MONOMERIC CLIVIA FLUOROGENIC RNA JRNL TITL 2 WITH A LARGE STOKES SHIFT. JRNL REF NAT.CHEM.BIOL. 2024 JRNL REFN ESSN 1552-4469 JRNL PMID 38816645 JRNL DOI 10.1038/S41589-024-01633-1 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 23804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1900 - 3.1800 0.98 2891 120 0.1560 0.1768 REMARK 3 2 3.1800 - 2.5300 1.00 2857 156 0.2315 0.2638 REMARK 3 3 2.5300 - 2.2100 0.99 2833 155 0.2390 0.2662 REMARK 3 4 2.2100 - 2.0100 1.00 2864 113 0.2349 0.2764 REMARK 3 5 2.0100 - 1.8600 1.00 2857 137 0.2291 0.2677 REMARK 3 6 1.8600 - 1.7500 1.00 2820 160 0.2299 0.2697 REMARK 3 7 1.7500 - 1.6600 1.00 2806 163 0.2451 0.2798 REMARK 3 8 1.6600 - 1.5900 0.97 2722 150 0.2667 0.3009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1812 REMARK 3 ANGLE : 0.965 2806 REMARK 3 CHIRALITY : 0.044 358 REMARK 3 PLANARITY : 0.008 82 REMARK 3 DIHEDRAL : 15.836 874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97892 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MAGNESIUM CHLORIDE, 0.1 M HEPES REMARK 280 PH 7.5, 30% POLYETHYLENE GLYCOL MONOMETHYL ETHER 550, 0.6% 1,6- REMARK 280 DIAMINOHEXANE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.07550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.07550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 264 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C A 36 O4 PO4 A 108 2.09 REMARK 500 O HOH B 220 O HOH B 287 2.16 REMARK 500 O5' G A 2 O3' GTP A 101 2.18 REMARK 500 OP1 G A 25 O HOH A 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 276 O HOH B 287 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 264 DISTANCE = 5.94 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PO4 A 108 REMARK 610 PO4 B 108 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 10 OP1 REMARK 620 2 HOH A 205 O 99.9 REMARK 620 3 HOH A 232 O 86.1 89.6 REMARK 620 4 HOH A 249 O 114.6 103.5 152.6 REMARK 620 5 HOH A 254 O 87.9 169.7 97.8 66.9 REMARK 620 6 HOH A 259 O 170.5 80.0 84.4 74.5 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 19 OP1 REMARK 620 2 HOH A 243 O 90.9 REMARK 620 3 HOH A 253 O 104.6 91.2 REMARK 620 4 HOH B 252 O 167.7 95.3 85.8 REMARK 620 5 HOH B 253 O 93.2 169.2 78.1 82.6 REMARK 620 6 HOH B 255 O 95.9 107.1 152.2 72.1 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 107 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 20 O3' REMARK 620 2 G A 20 O2' 55.9 REMARK 620 3 U B 8 OP1 78.0 25.4 REMARK 620 4 HOH B 245 O 104.1 73.9 76.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 214 O REMARK 620 2 HOH A 220 O 177.6 REMARK 620 3 HOH A 231 O 85.2 94.3 REMARK 620 4 HOH A 242 O 87.6 90.0 88.5 REMARK 620 5 HOH A 255 O 89.8 90.9 173.4 95.5 REMARK 620 6 HOH A 256 O 89.9 92.4 86.8 174.8 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 210 O REMARK 620 2 HOH A 224 O 96.3 REMARK 620 3 HOH A 248 O 87.2 102.7 REMARK 620 4 HOH A 258 O 171.2 90.1 97.2 REMARK 620 5 HOH A 263 O 91.6 170.7 72.7 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 201 O REMARK 620 2 HOH A 229 O 106.6 REMARK 620 3 HOH A 236 O 156.7 90.2 REMARK 620 4 HOH B 215 O 86.9 87.4 110.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 228 O REMARK 620 2 HOH B 233 O 88.5 REMARK 620 3 HOH B 234 O 93.4 90.6 REMARK 620 4 HOH B 240 O 92.2 177.0 92.2 REMARK 620 5 HOH B 278 O 176.5 91.6 90.1 87.4 REMARK 620 6 HOH B 282 O 91.6 89.3 175.0 87.8 84.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 241 O REMARK 620 2 C B 30 OP2 98.6 REMARK 620 3 A B 31 OP2 94.2 103.3 REMARK 620 4 HOH B 257 O 84.2 89.7 166.9 REMARK 620 5 HOH B 263 O 170.2 86.4 92.8 87.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 12 OP1 REMARK 620 2 G B 24 OP1 72.2 REMARK 620 3 HOH B 260 O 62.7 10.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 107 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 20 OP2 REMARK 620 2 HOH B 208 O 83.4 REMARK 620 3 HOH B 212 O 111.5 101.5 REMARK 620 4 HOH B 213 O 79.1 66.6 163.7 REMARK 620 5 HOH B 249 O 98.9 151.9 103.5 86.3 REMARK 620 6 HOH B 276 O 162.9 81.8 79.8 87.2 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 23 OP2 REMARK 620 2 HOH B 206 O 100.2 REMARK 620 3 HOH B 273 O 105.7 146.9 REMARK 620 4 HOH B 285 O 154.9 97.3 52.2 REMARK 620 5 HOH B 286 O 104.9 101.7 51.8 53.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 227 O REMARK 620 2 HOH B 230 O 167.8 REMARK 620 3 HOH B 265 O 96.7 95.4 REMARK 620 4 HOH B 272 O 86.0 94.1 97.2 REMARK 620 5 HOH B 281 O 87.4 80.4 169.9 92.3 REMARK 620 6 HOH B 284 O 92.4 86.6 87.4 175.3 83.2 REMARK 620 N 1 2 3 4 5 DBREF 8HZE A 2 36 PDB 8HZE 8HZE 2 36 DBREF 8HZE B 2 36 PDB 8HZE 8HZE 2 36 SEQRES 1 A 35 G A A G A U U G U A A A C SEQRES 2 A 35 A U G C C G A A A G G C A SEQRES 3 A 35 G A C A C U U C C SEQRES 1 B 35 G A A G A U U G U A A A C SEQRES 2 B 35 A U G C C G A A A G G C A SEQRES 3 B 35 G A C A C U U C C HET GTP A 101 32 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET MG A 106 1 HET K A 107 1 HET PO4 A 108 4 HET NI4 A 109 27 HET GTP B 101 32 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HET MG B 105 1 HET MG B 106 1 HET MG B 107 1 HET PO4 B 108 4 HET NI4 B 109 27 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION HETNAM NI4 (5~{Z})-5-[[4-[2-HYDROXYETHYL(METHYL) HETNAM 2 NI4 AMINO]PHENYL]METHYLIDENE]-3-METHYL-2-[(~{E})-2- HETNAM 3 NI4 PHENYLETHENYL]IMIDAZOL-4-ONE FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 MG 11(MG 2+) FORMUL 9 K K 1+ FORMUL 10 PO4 2(O4 P 3-) FORMUL 11 NI4 2(C22 H23 N3 O2) FORMUL 21 HOH *151(H2 O) LINK P G A 2 O3' GTP A 101 1555 1555 1.56 LINK P G B 2 O3' GTP B 101 1555 1555 1.56 LINK OP1 U A 10 MG MG A 105 1555 1555 1.95 LINK OP1 C A 19 MG MG A 106 1555 1555 2.11 LINK O3' G A 20 K K A 107 1555 1555 2.99 LINK O2' G A 20 K K A 107 1555 1555 2.96 LINK MG MG A 102 O HOH A 214 1555 1555 2.09 LINK MG MG A 102 O HOH A 220 1555 1555 1.98 LINK MG MG A 102 O HOH A 231 1555 1555 2.21 LINK MG MG A 102 O HOH A 242 1555 1555 2.13 LINK MG MG A 102 O HOH A 255 1555 1555 2.09 LINK MG MG A 102 O HOH A 256 1555 1555 2.09 LINK MG MG A 103 O HOH A 210 1555 1555 1.92 LINK MG MG A 103 O HOH A 224 1555 1555 2.33 LINK MG MG A 103 O HOH A 248 1555 1555 2.36 LINK MG MG A 103 O HOH A 258 1555 1555 2.36 LINK MG MG A 103 O HOH A 263 1555 1555 2.30 LINK MG MG A 104 O HOH A 201 1555 1555 1.95 LINK MG MG A 104 O HOH A 229 1555 1555 2.03 LINK MG MG A 104 O HOH A 236 1555 1555 2.00 LINK MG MG A 104 O HOH B 215 1555 1556 2.27 LINK MG MG A 105 O HOH A 205 1555 1555 2.06 LINK MG MG A 105 O HOH A 232 1555 1555 2.14 LINK MG MG A 105 O HOH A 249 1555 1555 2.49 LINK MG MG A 105 O HOH A 254 1555 1555 2.72 LINK MG MG A 105 O HOH A 259 1555 1555 2.23 LINK MG MG A 106 O HOH A 243 1555 1555 2.04 LINK MG MG A 106 O HOH A 253 1555 1555 2.15 LINK MG MG A 106 O HOH B 252 1555 4456 2.07 LINK MG MG A 106 O HOH B 253 1555 4456 2.15 LINK MG MG A 106 O HOH B 255 1555 4456 2.18 LINK K K A 107 OP1 U B 8 1554 1555 3.06 LINK K K A 107 O HOH B 245 1555 1556 2.67 LINK O HOH A 228 MG MG B 104 1554 1555 2.00 LINK O HOH A 241 MG MG B 102 1555 1555 1.96 LINK OP1 A B 12 MG MG B 105 1555 2555 2.57 LINK OP2 G B 20 MG MG B 107 1555 1555 2.05 LINK OP2 A B 23 MG MG B 106 1555 1555 2.91 LINK OP1 G B 24 MG MG B 105 1555 1555 2.38 LINK OP2 C B 30 MG MG B 102 1555 1555 2.04 LINK OP2 A B 31 MG MG B 102 1555 1555 2.09 LINK MG MG B 102 O HOH B 257 1555 1555 1.97 LINK MG MG B 102 O HOH B 263 1555 1555 2.11 LINK MG MG B 103 O HOH B 227 1555 1555 2.21 LINK MG MG B 103 O HOH B 230 1555 1555 2.17 LINK MG MG B 103 O HOH B 265 1555 1555 1.90 LINK MG MG B 103 O HOH B 272 1555 1555 1.95 LINK MG MG B 103 O HOH B 281 1555 1555 2.14 LINK MG MG B 103 O HOH B 284 1555 1555 2.29 LINK MG MG B 104 O HOH B 233 1555 1555 2.11 LINK MG MG B 104 O HOH B 234 1555 1555 1.99 LINK MG MG B 104 O HOH B 240 1555 1555 2.10 LINK MG MG B 104 O HOH B 278 1555 1555 2.25 LINK MG MG B 104 O HOH B 282 1555 1555 2.14 LINK MG MG B 105 O HOH B 260 1555 2555 2.33 LINK MG MG B 106 O HOH B 206 1555 1555 2.74 LINK MG MG B 106 O HOH B 273 1555 1555 2.53 LINK MG MG B 106 O HOH B 285 1555 1555 2.51 LINK MG MG B 106 O HOH B 286 1555 1555 2.65 LINK MG MG B 107 O HOH B 208 1555 4445 2.28 LINK MG MG B 107 O HOH B 212 1555 1555 2.19 LINK MG MG B 107 O HOH B 213 1555 4445 2.18 LINK MG MG B 107 O HOH B 249 1555 1555 2.10 LINK MG MG B 107 O HOH B 276 1555 4445 2.32 CRYST1 76.151 45.870 57.116 90.00 115.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013132 0.000000 0.006146 0.00000 SCALE2 0.000000 0.021801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019331 0.00000