HEADER TRANSFERASE 10-JAN-23 8I06 TITLE CRYSTAL STRUCTURE OF SERINE ACETYLTRANSFERASE FROM SALMONELLA TITLE 2 TYPHIMURIUM COMPLEXED WITH COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.30; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: CYSE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SALMONELLA, SERINE ACETYLTRANSFERASE, CYSTEINE SYNTHESIS, BETA-HELIX, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TOYOMOTO,K.ONO,T.SHIBA,K.MOMITANI,T.ZHANG,H.TSUTSUKI,T.ISHIKAWA, AUTHOR 2 K.HOSO,K.HAMADA,A.RAHMAN,H.ZHONG,T.AKAIKE,K.YAMAMOTO,M.MATSUOKA, AUTHOR 3 K.HANAOKA,T.NIIDOME,T.SAWA REVDAT 2 29-NOV-23 8I06 1 JRNL REVDAT 1 22-NOV-23 8I06 0 JRNL AUTH T.TOYOMOTO,K.ONO,T.SHIBA,K.MOMITANI,T.ZHANG,H.TSUTSUKI, JRNL AUTH 2 T.ISHIKAWA,K.HOSO,K.HAMADA,A.RAHMAN,L.WEN,Y.MAEDA, JRNL AUTH 3 K.YAMAMOTO,M.MATSUOKA,K.HANAOKA,T.NIIDOME,T.AKAIKE,T.SAWA JRNL TITL ALKYL GALLATES INHIBIT SERINE O -ACETYLTRANSFERASE IN JRNL TITL 2 BACTERIA AND ENHANCE SUSCEPTIBILITY OF DRUG-RESISTANT JRNL TITL 3 GRAM-NEGATIVE BACTERIA TO ANTIBIOTICS. JRNL REF FRONT MICROBIOL V. 14 76447 2023 JRNL REFN ESSN 1664-302X JRNL PMID 37965540 JRNL DOI 10.3389/FMICB.2023.1276447 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1664 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.328 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3827 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3745 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5212 ; 1.714 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8600 ; 1.035 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 6.816 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;37.482 ;23.662 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;17.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.797 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4256 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 818 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 5.199 ; 7.443 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1947 ; 5.194 ; 7.440 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2428 ; 7.279 ;11.158 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2429 ; 7.280 ;11.162 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1879 ; 5.580 ; 8.076 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1880 ; 5.578 ; 8.080 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2785 ; 8.154 ;11.891 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4219 ;10.159 ;60.632 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4220 ;10.159 ;60.651 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8I06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24563 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 30.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 29.50 REMARK 200 R MERGE FOR SHELL (I) : 1.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7E3Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM POTASSIUM SODIUM TARTRATE, 5 MM REMARK 280 DTT, 5 MM CYSTEINE, 100 MM COA, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.85500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.85500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 80.85500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 80.85500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 80.85500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 80.85500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 80.85500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 80.85500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 80.85500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 80.85500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.85500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.85500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 80.85500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.85500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 80.85500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 80.85500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 80.85500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 80.85500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 80.85500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 80.85500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 80.85500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 80.85500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 80.85500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ASP A 0 REMARK 465 GLY A 245 REMARK 465 LYS A 246 REMARK 465 PRO A 247 REMARK 465 GLY A 248 REMARK 465 SER A 249 REMARK 465 ASP A 250 REMARK 465 LYS A 251 REMARK 465 PRO A 252 REMARK 465 SER A 253 REMARK 465 MET A 254 REMARK 465 ASP A 255 REMARK 465 MET A 256 REMARK 465 ASP A 257 REMARK 465 GLN A 258 REMARK 465 HIS A 259 REMARK 465 PHE A 260 REMARK 465 ASN A 261 REMARK 465 GLY A 262 REMARK 465 ILE A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 THR A 266 REMARK 465 PHE A 267 REMARK 465 GLU A 268 REMARK 465 TYR A 269 REMARK 465 GLY A 270 REMARK 465 ASP A 271 REMARK 465 GLY A 272 REMARK 465 MET B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ASP B 0 REMARK 465 PRO B 1 REMARK 465 PRO B 2 REMARK 465 CYS B 3 REMARK 465 GLU B 4 REMARK 465 GLY B 245 REMARK 465 LYS B 246 REMARK 465 PRO B 247 REMARK 465 GLY B 248 REMARK 465 SER B 249 REMARK 465 ASP B 250 REMARK 465 LYS B 251 REMARK 465 PRO B 252 REMARK 465 SER B 253 REMARK 465 MET B 254 REMARK 465 ASP B 255 REMARK 465 MET B 256 REMARK 465 ASP B 257 REMARK 465 GLN B 258 REMARK 465 HIS B 259 REMARK 465 PHE B 260 REMARK 465 ASN B 261 REMARK 465 GLY B 262 REMARK 465 ILE B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 THR B 266 REMARK 465 PHE B 267 REMARK 465 GLU B 268 REMARK 465 TYR B 269 REMARK 465 GLY B 270 REMARK 465 ASP B 271 REMARK 465 GLY B 272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 231 OG1 THR B 234 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 158 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 156 70.07 -113.93 REMARK 500 LEU A 177 -168.46 -104.09 REMARK 500 LEU B 6 -66.86 -98.74 REMARK 500 ASP B 143 79.44 -119.84 REMARK 500 HIS B 158 27.80 49.52 REMARK 500 ALA B 159 -3.67 -41.72 REMARK 500 THR B 160 105.27 -45.90 REMARK 500 ASP B 172 150.60 -49.29 REMARK 500 GLN B 178 151.74 -45.27 REMARK 500 SER B 179 15.91 58.79 REMARK 500 LEU B 182 74.49 -114.08 REMARK 500 LYS B 187 -50.02 78.37 REMARK 500 ARG B 192 18.82 -155.83 REMARK 500 GLU B 198 155.51 -42.91 REMARK 500 ILE B 212 -143.98 -93.47 REMARK 500 ARG B 216 178.21 -41.54 REMARK 500 ALA B 218 -160.48 -77.55 REMARK 500 LYS B 219 107.58 -166.56 REMARK 500 THR B 234 -148.48 -89.17 REMARK 500 THR B 235 112.39 -173.85 REMARK 500 ALA B 237 158.39 174.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 158 ALA A 159 -142.13 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8I06 A 2 272 UNP A0A0D6I3Y9_SALTM DBREF2 8I06 A A0A0D6I3Y9 2 272 DBREF1 8I06 B 2 272 UNP A0A0D6I3Y9_SALTM DBREF2 8I06 B A0A0D6I3Y9 2 272 SEQADV 8I06 MET A -7 UNP A0A0D6I3Y INITIATING METHIONINE SEQADV 8I06 HIS A -6 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS A -5 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS A -4 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS A -3 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS A -2 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS A -1 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 ASP A 0 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 PRO A 1 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 MET B -7 UNP A0A0D6I3Y INITIATING METHIONINE SEQADV 8I06 HIS B -6 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS B -5 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS B -4 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS B -3 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS B -2 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 HIS B -1 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 ASP B 0 UNP A0A0D6I3Y EXPRESSION TAG SEQADV 8I06 PRO B 1 UNP A0A0D6I3Y EXPRESSION TAG SEQRES 1 A 280 MET HIS HIS HIS HIS HIS HIS ASP PRO PRO CYS GLU GLU SEQRES 2 A 280 LEU GLU ILE VAL TRP LYS ASN ILE LYS ALA GLU ALA ARG SEQRES 3 A 280 ALA LEU ALA ASP CYS GLU PRO MET LEU ALA SER PHE TYR SEQRES 4 A 280 HIS ALA THR LEU LEU LYS HIS GLU ASN LEU GLY SER ALA SEQRES 5 A 280 LEU SER TYR MET LEU ALA ASN LYS LEU ALA SER PRO ILE SEQRES 6 A 280 MET PRO ALA ILE ALA ILE ARG GLU VAL VAL GLU GLU ALA SEQRES 7 A 280 TYR ALA ALA ASP PRO GLU MET ILE ALA SER ALA ALA CYS SEQRES 8 A 280 ASP ILE GLN ALA VAL ARG THR ARG ASP PRO ALA VAL ASP SEQRES 9 A 280 LYS TYR SER THR PRO LEU LEU TYR LEU LYS GLY PHE HIS SEQRES 10 A 280 ALA LEU GLN ALA TYR ARG ILE GLY HIS TRP LEU TRP ASN SEQRES 11 A 280 LYS GLY ARG ARG ALA LEU ALA ILE PHE LEU GLN ASN GLN SEQRES 12 A 280 VAL SER VAL SER PHE GLN VAL ASP ILE HIS PRO ALA ALA SEQRES 13 A 280 LYS ILE GLY ARG GLY ILE MET LEU ASP HIS ALA THR GLY SEQRES 14 A 280 ILE VAL VAL GLY GLU THR ALA VAL ILE GLU ASP ASP VAL SEQRES 15 A 280 SER ILE LEU GLN SER VAL THR LEU GLY GLY THR GLY LYS SEQRES 16 A 280 THR SER GLY ASP ARG HIS PRO LYS ILE ARG GLU GLY VAL SEQRES 17 A 280 MET ILE GLY ALA GLY ALA LYS ILE LEU GLY ASN ILE GLU SEQRES 18 A 280 VAL GLY ARG GLY ALA LYS ILE GLY ALA GLY SER VAL VAL SEQRES 19 A 280 LEU GLN PRO VAL PRO PRO HIS THR THR ALA ALA GLY VAL SEQRES 20 A 280 PRO ALA ARG ILE VAL GLY LYS PRO GLY SER ASP LYS PRO SEQRES 21 A 280 SER MET ASP MET ASP GLN HIS PHE ASN GLY ILE HIS HIS SEQRES 22 A 280 THR PHE GLU TYR GLY ASP GLY SEQRES 1 B 280 MET HIS HIS HIS HIS HIS HIS ASP PRO PRO CYS GLU GLU SEQRES 2 B 280 LEU GLU ILE VAL TRP LYS ASN ILE LYS ALA GLU ALA ARG SEQRES 3 B 280 ALA LEU ALA ASP CYS GLU PRO MET LEU ALA SER PHE TYR SEQRES 4 B 280 HIS ALA THR LEU LEU LYS HIS GLU ASN LEU GLY SER ALA SEQRES 5 B 280 LEU SER TYR MET LEU ALA ASN LYS LEU ALA SER PRO ILE SEQRES 6 B 280 MET PRO ALA ILE ALA ILE ARG GLU VAL VAL GLU GLU ALA SEQRES 7 B 280 TYR ALA ALA ASP PRO GLU MET ILE ALA SER ALA ALA CYS SEQRES 8 B 280 ASP ILE GLN ALA VAL ARG THR ARG ASP PRO ALA VAL ASP SEQRES 9 B 280 LYS TYR SER THR PRO LEU LEU TYR LEU LYS GLY PHE HIS SEQRES 10 B 280 ALA LEU GLN ALA TYR ARG ILE GLY HIS TRP LEU TRP ASN SEQRES 11 B 280 LYS GLY ARG ARG ALA LEU ALA ILE PHE LEU GLN ASN GLN SEQRES 12 B 280 VAL SER VAL SER PHE GLN VAL ASP ILE HIS PRO ALA ALA SEQRES 13 B 280 LYS ILE GLY ARG GLY ILE MET LEU ASP HIS ALA THR GLY SEQRES 14 B 280 ILE VAL VAL GLY GLU THR ALA VAL ILE GLU ASP ASP VAL SEQRES 15 B 280 SER ILE LEU GLN SER VAL THR LEU GLY GLY THR GLY LYS SEQRES 16 B 280 THR SER GLY ASP ARG HIS PRO LYS ILE ARG GLU GLY VAL SEQRES 17 B 280 MET ILE GLY ALA GLY ALA LYS ILE LEU GLY ASN ILE GLU SEQRES 18 B 280 VAL GLY ARG GLY ALA LYS ILE GLY ALA GLY SER VAL VAL SEQRES 19 B 280 LEU GLN PRO VAL PRO PRO HIS THR THR ALA ALA GLY VAL SEQRES 20 B 280 PRO ALA ARG ILE VAL GLY LYS PRO GLY SER ASP LYS PRO SEQRES 21 B 280 SER MET ASP MET ASP GLN HIS PHE ASN GLY ILE HIS HIS SEQRES 22 B 280 THR PHE GLU TYR GLY ASP GLY HET CYS A 401 7 HET COA A 402 48 HET CYS B 401 7 HET COA B 402 48 HETNAM CYS CYSTEINE HETNAM COA COENZYME A FORMUL 3 CYS 2(C3 H7 N O2 S) FORMUL 4 COA 2(C21 H36 N7 O16 P3 S) FORMUL 7 HOH *9(H2 O) HELIX 1 AA1 PRO A 1 GLU A 24 1 24 HELIX 2 AA2 LEU A 27 LEU A 35 1 9 HELIX 3 AA3 ASN A 40 ALA A 54 1 15 HELIX 4 AA4 PRO A 59 ASP A 74 1 16 HELIX 5 AA5 PRO A 75 ASP A 92 1 18 HELIX 6 AA6 TYR A 98 TYR A 104 1 7 HELIX 7 AA7 LEU A 105 LYS A 123 1 19 HELIX 8 AA8 ARG A 125 GLN A 141 1 17 HELIX 9 AA9 LEU B 6 GLU B 24 1 19 HELIX 10 AB1 LEU B 27 LEU B 35 1 9 HELIX 11 AB2 ASN B 40 ALA B 54 1 15 HELIX 12 AB3 PRO B 59 ASP B 74 1 16 HELIX 13 AB4 PRO B 75 ASP B 92 1 18 HELIX 14 AB5 TYR B 98 LEU B 105 1 8 HELIX 15 AB6 LEU B 105 GLY B 124 1 20 HELIX 16 AB7 ARG B 125 GLN B 141 1 17 SHEET 1 AA1 5 ASP A 143 ILE A 144 0 SHEET 2 AA1 5 VAL A 163 VAL A 164 1 O VAL A 164 N ASP A 143 SHEET 3 AA1 5 THR A 181 GLY A 183 1 O LEU A 182 N VAL A 163 SHEET 4 AA1 5 LYS A 207 LEU A 209 1 O ILE A 208 N THR A 181 SHEET 5 AA1 5 VAL A 225 VAL A 226 1 O VAL A 226 N LYS A 207 SHEET 1 AA2 4 LYS A 149 ILE A 150 0 SHEET 2 AA2 4 VAL A 169 ILE A 170 1 O ILE A 170 N LYS A 149 SHEET 3 AA2 4 LYS A 195 ILE A 196 1 O ILE A 196 N VAL A 169 SHEET 4 AA2 4 GLU A 213 VAL A 214 1 O VAL A 214 N LYS A 195 SHEET 1 AA3 6 MET A 155 LEU A 156 0 SHEET 2 AA3 6 SER A 175 ILE A 176 1 O ILE A 176 N MET A 155 SHEET 3 AA3 6 MET A 201 ILE A 202 1 O ILE A 202 N SER A 175 SHEET 4 AA3 6 LYS A 219 ILE A 220 1 O ILE A 220 N MET A 201 SHEET 5 AA3 6 THR A 235 ALA A 237 1 O ALA A 236 N LYS A 219 SHEET 6 AA3 6 ARG A 242 ILE A 243 -1 O ARG A 242 N ALA A 237 SHEET 1 AA4 5 ASP B 143 ILE B 144 0 SHEET 2 AA4 5 VAL B 163 VAL B 164 1 O VAL B 164 N ASP B 143 SHEET 3 AA4 5 THR B 181 GLY B 183 1 O LEU B 182 N VAL B 163 SHEET 4 AA4 5 LYS B 207 LEU B 209 1 O ILE B 208 N GLY B 183 SHEET 5 AA4 5 VAL B 225 VAL B 226 1 O VAL B 226 N LYS B 207 SHEET 1 AA5 2 LYS B 149 ILE B 150 0 SHEET 2 AA5 2 VAL B 169 ILE B 170 1 O ILE B 170 N LYS B 149 SHEET 1 AA6 2 MET B 155 LEU B 156 0 SHEET 2 AA6 2 SER B 175 ILE B 176 1 O ILE B 176 N MET B 155 CISPEP 1 ASP A 157 HIS A 158 0 -11.27 CISPEP 2 VAL A 239 PRO A 240 0 -2.42 CISPEP 3 VAL B 239 PRO B 240 0 -7.29 CRYST1 161.710 161.710 161.710 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006184 0.00000