HEADER TRANSFERASE 18-JAN-23 8I3X TITLE RICE APIP6-RING HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING-TYPE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: ASIAN CULTIVATED RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: OSI_18510; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RICE, E3 UBIQUITIN TRANSFERASES/LIGASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHENG,X.ZHANG,Y.LIU,J.LIU,D.WANG REVDAT 1 29-NOV-23 8I3X 0 JRNL AUTH Y.ZHENG,X.ZHANG,Y.LIU,T.ZHU,X.WU,Y.NING,J.LIU,D.WANG JRNL TITL CRYSTAL STRUCTURE OF RICE APIP6 REVEALS A NEW DIMERIZATION JRNL TITL 2 MODE OF RING-TYPE E3 LIGASES THAT FACILITIES THE JRNL TITL 3 CONSTRUCTION OF ITS WORKING MODEL JRNL REF PHYTOPATHOL RES V. 5 2023 JRNL DOI 10.1186/S42483-023-00186-W REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6400 - 2.8254 1.00 3314 161 0.1671 0.2281 REMARK 3 2 2.8254 - 2.2427 1.00 3149 159 0.2237 0.2355 REMARK 3 3 2.2427 - 1.9592 1.00 3127 150 0.1956 0.2443 REMARK 3 4 1.9592 - 1.7801 1.00 3095 150 0.2338 0.2338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 902 REMARK 3 ANGLE : 0.743 1212 REMARK 3 CHIRALITY : 0.057 132 REMARK 3 PLANARITY : 0.004 158 REMARK 3 DIHEDRAL : 3.327 536 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2503 -10.2464 -18.9976 REMARK 3 T TENSOR REMARK 3 T11: 0.3330 T22: 0.3200 REMARK 3 T33: 0.4703 T12: 0.0383 REMARK 3 T13: 0.0099 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 7.1404 L22: 3.3396 REMARK 3 L33: 2.5997 L12: 3.9909 REMARK 3 L13: -0.4172 L23: 1.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.1109 S12: 0.0255 S13: -0.6256 REMARK 3 S21: 0.2649 S22: -0.0973 S23: -0.4022 REMARK 3 S31: -0.3080 S32: -0.5106 S33: 0.3596 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0120 -7.6808 -16.1683 REMARK 3 T TENSOR REMARK 3 T11: 0.5114 T22: 0.3828 REMARK 3 T33: 0.5332 T12: 0.0277 REMARK 3 T13: -0.0434 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.1907 L22: 3.2261 REMARK 3 L33: 3.1188 L12: -1.1064 REMARK 3 L13: 0.6544 L23: -3.0760 REMARK 3 S TENSOR REMARK 3 S11: 0.1506 S12: -0.4640 S13: -0.2803 REMARK 3 S21: 1.1492 S22: 0.0448 S23: -0.4999 REMARK 3 S31: -0.1441 S32: 0.8356 S33: -0.1802 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3048 -4.6529 -10.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.5234 T22: 0.3163 REMARK 3 T33: 0.6987 T12: 0.0800 REMARK 3 T13: 0.0030 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 6.7709 L22: 2.3236 REMARK 3 L33: 9.7564 L12: 1.6004 REMARK 3 L13: 0.3881 L23: 0.4543 REMARK 3 S TENSOR REMARK 3 S11: 0.2202 S12: -0.6009 S13: -1.4296 REMARK 3 S21: 0.2913 S22: -0.0438 S23: -0.8573 REMARK 3 S31: 1.3389 S32: 0.7699 S33: 0.0507 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6867 -5.4973 -15.0321 REMARK 3 T TENSOR REMARK 3 T11: 0.3576 T22: 0.3793 REMARK 3 T33: 0.4489 T12: -0.0687 REMARK 3 T13: -0.0166 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 4.8110 L22: 3.7192 REMARK 3 L33: 1.0521 L12: 4.1494 REMARK 3 L13: 0.0073 L23: -0.3846 REMARK 3 S TENSOR REMARK 3 S11: -0.2526 S12: 0.2197 S13: -0.0429 REMARK 3 S21: -0.2584 S22: 0.3920 S23: 0.9825 REMARK 3 S31: 0.5594 S32: -0.9321 S33: -0.2653 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7910 2.4146 -18.1996 REMARK 3 T TENSOR REMARK 3 T11: 0.3221 T22: 0.2594 REMARK 3 T33: 0.3149 T12: -0.0082 REMARK 3 T13: 0.0075 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 3.6813 L22: 3.9007 REMARK 3 L33: 1.9017 L12: 0.4213 REMARK 3 L13: 0.7181 L23: 0.2376 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: -0.0255 S13: 0.0919 REMARK 3 S21: -0.2082 S22: 0.0749 S23: 0.0030 REMARK 3 S31: -0.1025 S32: 0.0531 S33: 0.0288 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4094 -4.0266 -22.8165 REMARK 3 T TENSOR REMARK 3 T11: 0.4186 T22: 0.2568 REMARK 3 T33: 0.4695 T12: 0.0110 REMARK 3 T13: 0.0145 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 8.4649 L22: 7.3227 REMARK 3 L33: 7.4846 L12: -0.8310 REMARK 3 L13: 0.1321 L23: 1.0724 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: 0.1661 S13: -0.5378 REMARK 3 S21: -0.3774 S22: -0.2059 S23: 0.8355 REMARK 3 S31: 0.2528 S32: -0.0468 S33: 0.1906 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7992 8.8074 -13.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.4076 T22: 0.3260 REMARK 3 T33: 0.4460 T12: 0.0770 REMARK 3 T13: 0.0239 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 6.8432 L22: 2.8943 REMARK 3 L33: 5.3757 L12: 4.2034 REMARK 3 L13: 1.9003 L23: 2.3740 REMARK 3 S TENSOR REMARK 3 S11: 0.1516 S12: -0.0706 S13: 0.1942 REMARK 3 S21: 0.7251 S22: -0.1920 S23: 0.9415 REMARK 3 S31: 0.2946 S32: -0.1220 S33: 0.1481 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6778 0.8431 2.7217 REMARK 3 T TENSOR REMARK 3 T11: 0.8453 T22: 0.5860 REMARK 3 T33: 0.3761 T12: -0.0099 REMARK 3 T13: 0.0435 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 8.7688 L22: 3.4200 REMARK 3 L33: 8.6077 L12: -1.4517 REMARK 3 L13: 6.5119 L23: -3.4132 REMARK 3 S TENSOR REMARK 3 S11: 0.4185 S12: -0.9772 S13: -0.6221 REMARK 3 S21: 0.7781 S22: -0.0713 S23: 0.4049 REMARK 3 S31: 0.4471 S32: -0.4659 S33: -0.6857 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4364 0.7279 -1.2051 REMARK 3 T TENSOR REMARK 3 T11: 0.6923 T22: 0.5599 REMARK 3 T33: 0.5118 T12: -0.1163 REMARK 3 T13: 0.0946 T23: -0.0969 REMARK 3 L TENSOR REMARK 3 L11: 2.0852 L22: 7.1577 REMARK 3 L33: 9.6951 L12: -1.1094 REMARK 3 L13: -2.4421 L23: -0.1108 REMARK 3 S TENSOR REMARK 3 S11: -0.3389 S12: 0.5841 S13: -0.5712 REMARK 3 S21: -0.3583 S22: -0.0605 S23: 1.3090 REMARK 3 S31: 0.7653 S32: -0.6690 S33: 0.1449 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5667 -2.0171 -7.0730 REMARK 3 T TENSOR REMARK 3 T11: 0.5303 T22: 0.4674 REMARK 3 T33: 0.5958 T12: -0.0607 REMARK 3 T13: -0.0226 T23: 0.0913 REMARK 3 L TENSOR REMARK 3 L11: 0.7002 L22: 7.6525 REMARK 3 L33: 8.0629 L12: 1.7275 REMARK 3 L13: 0.0221 L23: 1.7977 REMARK 3 S TENSOR REMARK 3 S11: 0.1367 S12: -1.1631 S13: -2.0296 REMARK 3 S21: 0.1244 S22: 0.2712 S23: 0.9055 REMARK 3 S31: 1.1463 S32: -0.9269 S33: -0.2939 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4661 -0.4858 -2.6666 REMARK 3 T TENSOR REMARK 3 T11: 0.4458 T22: 0.6439 REMARK 3 T33: 0.5200 T12: 0.1264 REMARK 3 T13: -0.2036 T23: 0.0857 REMARK 3 L TENSOR REMARK 3 L11: 1.3456 L22: 3.5235 REMARK 3 L33: 8.1853 L12: 2.1501 REMARK 3 L13: -1.6467 L23: -2.0049 REMARK 3 S TENSOR REMARK 3 S11: -1.0997 S12: -0.6143 S13: 0.8182 REMARK 3 S21: 0.5518 S22: 0.1482 S23: -1.3715 REMARK 3 S31: 0.4598 S32: 0.8078 S33: 0.6951 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9940 7.5364 -7.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.3745 T22: 0.2904 REMARK 3 T33: 0.3070 T12: 0.0220 REMARK 3 T13: 0.0005 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 9.0589 L22: 3.1027 REMARK 3 L33: 4.1721 L12: 1.0827 REMARK 3 L13: -0.5999 L23: -0.2365 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.6833 S13: 0.4307 REMARK 3 S21: 0.1529 S22: 0.0607 S23: -0.0097 REMARK 3 S31: -0.1118 S32: 0.2196 S33: -0.1190 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6460 7.0083 0.8901 REMARK 3 T TENSOR REMARK 3 T11: 0.8633 T22: 0.6388 REMARK 3 T33: 0.4066 T12: 0.1821 REMARK 3 T13: 0.0664 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 3.1326 L22: 4.0269 REMARK 3 L33: 5.5857 L12: -0.4195 REMARK 3 L13: -1.0711 L23: -0.5148 REMARK 3 S TENSOR REMARK 3 S11: -1.1338 S12: -1.7901 S13: 0.4874 REMARK 3 S21: 2.3667 S22: 1.0487 S23: 0.6378 REMARK 3 S31: -0.2023 S32: 0.6228 S33: 0.0645 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9372 7.3960 -14.4532 REMARK 3 T TENSOR REMARK 3 T11: 0.3084 T22: 0.3813 REMARK 3 T33: 0.3721 T12: -0.0493 REMARK 3 T13: -0.0017 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 2.9428 L22: 9.5433 REMARK 3 L33: 9.7103 L12: -4.2704 REMARK 3 L13: 3.9054 L23: -2.4651 REMARK 3 S TENSOR REMARK 3 S11: 0.1574 S12: -0.0697 S13: 0.6942 REMARK 3 S21: -0.0347 S22: 0.0363 S23: -0.7023 REMARK 3 S31: -0.1570 S32: 0.6203 S33: -0.1038 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300034691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13316 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 40.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM FLUORIDE, PEG 3350, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.11950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.59100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.28850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.59100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.11950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.28850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 SER A 30 REMARK 465 MET A 31 REMARK 465 ASN A 92 REMARK 465 MET B 22 REMARK 465 SER B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 HIS B 27 REMARK 465 HIS B 28 REMARK 465 HIS B 29 REMARK 465 SER B 30 REMARK 465 MET B 31 REMARK 465 ASN B 92 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 48 -151.68 -88.67 REMARK 500 GLU B 48 -95.77 -101.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 35 SG REMARK 620 2 CYS A 38 SG 118.2 REMARK 620 3 CYS A 64 SG 114.7 109.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 56 SG REMARK 620 2 CYS A 77 SG 105.3 REMARK 620 3 CYS A 80 SG 109.3 111.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 35 SG REMARK 620 2 CYS B 38 SG 116.2 REMARK 620 3 HIS B 61 ND1 102.5 91.8 REMARK 620 4 CYS B 64 SG 112.4 111.0 121.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 56 SG REMARK 620 2 HIS B 58 ND1 80.4 REMARK 620 3 CYS B 77 SG 100.7 131.2 REMARK 620 4 CYS B 80 SG 94.2 124.6 104.1 REMARK 620 N 1 2 3 DBREF 8I3X A 33 92 UNP B8AY66 B8AY66_ORYSI 33 92 DBREF 8I3X B 33 92 UNP B8AY66 B8AY66_ORYSI 33 92 SEQADV 8I3X MET A 22 UNP B8AY66 INITIATING METHIONINE SEQADV 8I3X SER A 23 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS A 24 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS A 25 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS A 26 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS A 27 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS A 28 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS A 29 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X SER A 30 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X MET A 31 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X ASP A 32 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X MET B 22 UNP B8AY66 INITIATING METHIONINE SEQADV 8I3X SER B 23 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS B 24 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS B 25 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS B 26 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS B 27 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS B 28 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X HIS B 29 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X SER B 30 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X MET B 31 UNP B8AY66 EXPRESSION TAG SEQADV 8I3X ASP B 32 UNP B8AY66 EXPRESSION TAG SEQRES 1 A 71 MET SER HIS HIS HIS HIS HIS HIS SER MET ASP VAL SER SEQRES 2 A 71 CYS SER ILE CYS LEU ASP ALA VAL VAL ALA ALA GLY GLY SEQRES 3 A 71 GLU ARG SER THR ALA ARG LEU GLN CYS GLY HIS GLU PHE SEQRES 4 A 71 HIS LEU ASP CYS ILE GLY SER ALA PHE ASN ALA LYS GLY SEQRES 5 A 71 VAL MET GLN CYS PRO ASN CYS ARG LYS ILE GLU LYS GLY SEQRES 6 A 71 ASN TRP LEU TYR ALA ASN SEQRES 1 B 71 MET SER HIS HIS HIS HIS HIS HIS SER MET ASP VAL SER SEQRES 2 B 71 CYS SER ILE CYS LEU ASP ALA VAL VAL ALA ALA GLY GLY SEQRES 3 B 71 GLU ARG SER THR ALA ARG LEU GLN CYS GLY HIS GLU PHE SEQRES 4 B 71 HIS LEU ASP CYS ILE GLY SER ALA PHE ASN ALA LYS GLY SEQRES 5 B 71 VAL MET GLN CYS PRO ASN CYS ARG LYS ILE GLU LYS GLY SEQRES 6 B 71 ASN TRP LEU TYR ALA ASN HET ZN A 101 1 HET ZN A 102 1 HET ZN B 101 1 HET ZN B 102 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *90(H2 O) HELIX 1 AA1 LEU A 62 GLY A 73 1 12 HELIX 2 AA2 LEU B 62 GLY B 73 1 12 SHEET 1 AA1 4 GLU A 59 HIS A 61 0 SHEET 2 AA1 4 THR A 51 ARG A 53 -1 N ALA A 52 O PHE A 60 SHEET 3 AA1 4 THR B 51 ARG B 53 -1 O ARG B 53 N THR A 51 SHEET 4 AA1 4 GLU B 59 HIS B 61 -1 O PHE B 60 N ALA B 52 SHEET 1 AA2 2 MET A 75 GLN A 76 0 SHEET 2 AA2 2 ILE A 83 GLU A 84 -1 O GLU A 84 N MET A 75 SHEET 1 AA3 2 VAL B 33 SER B 34 0 SHEET 2 AA3 2 ALA B 41 VAL B 42 -1 O VAL B 42 N VAL B 33 SHEET 1 AA4 2 MET B 75 GLN B 76 0 SHEET 2 AA4 2 ILE B 83 GLU B 84 -1 O GLU B 84 N MET B 75 LINK SG CYS A 35 ZN ZN A 101 1555 1555 2.37 LINK SG CYS A 38 ZN ZN A 101 1555 1555 2.36 LINK SG CYS A 56 ZN ZN A 102 1555 1555 2.32 LINK SG CYS A 64 ZN ZN A 101 1555 1555 2.36 LINK SG CYS A 77 ZN ZN A 102 1555 1555 2.36 LINK SG CYS A 80 ZN ZN A 102 1555 1555 2.31 LINK SG CYS B 35 ZN ZN B 101 1555 1555 2.36 LINK SG CYS B 38 ZN ZN B 101 1555 1555 2.34 LINK SG CYS B 56 ZN ZN B 102 1555 1555 2.48 LINK ND1 HIS B 58 ZN ZN B 102 1555 1555 2.17 LINK ND1 HIS B 61 ZN ZN B 101 1555 1555 2.27 LINK SG CYS B 64 ZN ZN B 101 1555 1555 2.39 LINK SG CYS B 77 ZN ZN B 102 1555 1555 2.39 LINK SG CYS B 80 ZN ZN B 102 1555 1555 2.38 CRYST1 34.239 46.577 83.182 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012022 0.00000