HEADER RNA 18-JAN-23 8I45 TITLE INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: TITLE 2 EFFECT OF BASE PAIRS 3' ADJACENT TO THE BULGE OUT RESIDUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-G-3GC-UUCG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 4 ORGANISM_TAXID: 10090 KEYWDS FLUOROQUINOLONE, RNA, INTERACTION, SPECIFICITY EXPDTA SOLUTION NMR NUMMDL 11 AUTHOR R.ICHIJO,T.KAMIMURA,G.KAWAI REVDAT 2 12-APR-23 8I45 1 JRNL REVDAT 1 29-MAR-23 8I45 0 JRNL AUTH R.ICHIJO,T.KAMIMURA,G.KAWAI JRNL TITL INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND JRNL TITL 2 RNAS: EFFECT OF BASE PAIRS 3' ADJACENT TO THE BULGED JRNL TITL 3 RESIDUES. JRNL REF FRONT MOL BIOSCI V. 10 45528 2023 JRNL REFN ESSN 2296-889X JRNL PMID 36999159 JRNL DOI 10.3389/FMOLB.2023.1145528 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034893. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.45 MM RNA-G-3GC-UUCG, 0.675 MM REMARK 210 KG022, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H42 C A 4 H151 53D A 20 0.95 REMARK 500 H2' G A 16 H6 U A 17 1.13 REMARK 500 H4' G A 15 H8 G A 16 1.23 REMARK 500 HO2' G A 5 H5' C A 6 1.24 REMARK 500 H2' U A 17 H6 C A 18 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8I43 RELATED DB: PDB REMARK 900 RELATED ID: 8I44 RELATED DB: PDB REMARK 900 RELATED ID: 36544 RELATED DB: BMRB REMARK 900 INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: REMARK 900 EFFECT OF BASE PAIRS 3' ADJACENT TO THE BULGE OUT RESIDUES DBREF 8I45 A 1 19 PDB 8I45 8I45 1 19 SEQRES 1 A 19 G G A C G C U U U C G A G SEQRES 2 A 19 C G G U C C HET 53D A 20 69 HETNAM 53D 1-CYCLOPROPYL-N-[3-(DIMETHYLAMINO)PROPYL]-7-(4- HETNAM 2 53D ETHYLPIPERAZIN-1-YL)-6-FLUORANYL-4-OXIDANYLIDENE- HETNAM 3 53D QUINOLINE-3-CARBOXAMIDE FORMUL 2 53D C24 H34 F N5 O2 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1