HEADER FLUORESCENT PROTEIN 19-JAN-23 8I4J TITLE STRUCTURE OF WILD-TYPE AZAMI GREEN FROM GALAXEA FASCICULARIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AZAMI-GREEN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL RESIDUES GSH ARE A REMNANT OF THE HIS-TAG. COMPND 6 VAL IS INSERTED BETWEEN MET1 AND SER2 FOR PROTEIN EXPRESSION. QYG IS COMPND 7 A FLUOROPHORE FORMED BY AUTOCATALYTIC CYCLIZATION OF ASN62, TYR63, COMPND 8 AND GLY64. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALAXEA FASCICULARIS; SOURCE 3 ORGANISM_TAXID: 46745; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS GREEN FLUORESCENT PROTEIN, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.OTSUBO,N.TAKEKAWA,H.IMAMURA,K.IMADA REVDAT 2 15-NOV-23 8I4J 1 LINK ATOM REVDAT 1 01-NOV-23 8I4J 0 JRNL AUTH H.IMAMURA,S.OTSUBO,M.NISHIDA,N.TAKEKAWA,K.IMADA JRNL TITL RED FLUORESCENT PROTEINS ENGINEERED FROM GREEN FLUORESCENT JRNL TITL 2 PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 87120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 37871160 JRNL DOI 10.1073/PNAS.2307687120 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 116190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.720 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.0500 - 3.9000 1.00 8600 150 0.1320 0.1459 REMARK 3 2 3.9000 - 3.1000 1.00 8277 146 0.1271 0.1404 REMARK 3 3 3.1000 - 2.7100 1.00 8229 144 0.1436 0.1601 REMARK 3 4 2.7100 - 2.4600 1.00 8161 143 0.1514 0.1715 REMARK 3 5 2.4600 - 2.2800 1.00 8183 143 0.1517 0.1841 REMARK 3 6 2.2800 - 2.1500 1.00 8105 142 0.1483 0.1814 REMARK 3 7 2.1500 - 2.0400 1.00 8119 142 0.1420 0.1909 REMARK 3 8 2.0400 - 1.9500 1.00 8131 143 0.1462 0.1813 REMARK 3 9 1.9500 - 1.8800 1.00 8079 141 0.1565 0.1787 REMARK 3 10 1.8800 - 1.8100 1.00 8095 142 0.1580 0.1863 REMARK 3 11 1.8100 - 1.7600 1.00 8036 141 0.1551 0.1887 REMARK 3 12 1.7600 - 1.7100 1.00 8050 141 0.1613 0.1927 REMARK 3 13 1.7100 - 1.6600 1.00 8059 141 0.1756 0.2355 REMARK 3 14 1.6600 - 1.6200 1.00 8066 141 0.1843 0.2372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 7463 REMARK 3 ANGLE : 1.385 10077 REMARK 3 CHIRALITY : 0.093 1034 REMARK 3 PLANARITY : 0.014 1314 REMARK 3 DIHEDRAL : 18.784 2840 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116315 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 67.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8.5, 0.2M MGCL2, 20% REMARK 280 PEG8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.39500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.02500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.02500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.39500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 LYS A 225 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 LYS B 225 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 VAL C 1 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 LYS D 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 311 O HOH B 561 1.93 REMARK 500 O HOH B 527 O HOH B 552 1.93 REMARK 500 O HOH D 308 O HOH D 589 1.95 REMARK 500 O HOH C 511 O HOH C 535 1.96 REMARK 500 O HOH A 343 O HOH B 306 1.97 REMARK 500 ND2 ASN D 106 O HOH D 301 1.99 REMARK 500 O HOH C 510 O HOH D 530 1.99 REMARK 500 O HOH C 513 O HOH C 523 1.99 REMARK 500 O HOH C 510 O HOH C 520 1.99 REMARK 500 O HOH A 520 O HOH A 531 2.01 REMARK 500 OE1 GLN B 81 O HOH B 301 2.03 REMARK 500 O HOH C 461 O HOH C 523 2.04 REMARK 500 O HOH C 383 O HOH D 583 2.05 REMARK 500 OD1 ASP A 203 O HOH A 301 2.06 REMARK 500 O HOH A 374 O HOH A 464 2.08 REMARK 500 O HOH D 567 O HOH D 641 2.08 REMARK 500 O HOH A 445 O HOH B 517 2.10 REMARK 500 O HOH B 318 O HOH B 355 2.12 REMARK 500 O HOH A 515 O HOH B 493 2.12 REMARK 500 O HOH B 629 O HOH D 557 2.12 REMARK 500 O HOH A 441 O HOH B 461 2.13 REMARK 500 O HOH B 516 O HOH B 589 2.13 REMARK 500 O HOH B 304 O HOH B 564 2.13 REMARK 500 OE2 GLU B 26 O HOH B 302 2.13 REMARK 500 O HOH D 385 O HOH D 516 2.14 REMARK 500 OD1 ASP D 203 O HOH D 302 2.14 REMARK 500 O HOH C 428 O HOH C 586 2.15 REMARK 500 O HOH B 582 O HOH D 559 2.16 REMARK 500 O HOH C 471 O HOH D 583 2.16 REMARK 500 O GLY A 166 O HOH A 302 2.16 REMARK 500 O HOH D 493 O HOH D 531 2.17 REMARK 500 O HOH B 565 O HOH B 583 2.17 REMARK 500 O HOH A 348 O HOH A 515 2.17 REMARK 500 O HOH B 426 O HOH D 560 2.17 REMARK 500 ND2 ASN C 106 O HOH C 301 2.18 REMARK 500 O HOH D 420 O HOH D 607 2.18 REMARK 500 O HOH A 482 O HOH A 608 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 588 O HOH C 597 3544 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 164 CB GLU A 164 CG -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 165 C - N - CA ANGL. DEV. = -16.9 DEGREES REMARK 500 ASP D 121 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP D 121 CB - CG - OD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 PHE D 173 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 112 31.02 -97.54 REMARK 500 ASP B 112 30.01 -99.08 REMARK 500 ARG C 66 0.44 -69.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN D 38 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 635 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 636 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 637 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH C 604 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH D 686 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH D 687 DISTANCE = 6.82 ANGSTROMS DBREF 8I4J A 0 225 UNP Q60I25 Q60I25_GALFS 1 225 DBREF 8I4J B 0 225 UNP Q60I25 Q60I25_GALFS 1 225 DBREF 8I4J C 0 225 UNP Q60I25 Q60I25_GALFS 1 225 DBREF 8I4J D 1 225 UNP Q60I25 Q60I25_GALFS 1 225 SEQADV 8I4J GLY A -3 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J SER A -2 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J HIS A -1 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J VAL A 1 UNP Q60I25 INSERTION SEQADV 8I4J QYG A 64 UNP Q60I25 GLN 62 CHROMOPHORE SEQADV 8I4J QYG A 64 UNP Q60I25 TYR 63 CHROMOPHORE SEQADV 8I4J QYG A 64 UNP Q60I25 GLY 64 CHROMOPHORE SEQADV 8I4J GLY B -3 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J SER B -2 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J HIS B -1 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J VAL B 1 UNP Q60I25 INSERTION SEQADV 8I4J QYG B 64 UNP Q60I25 GLN 62 CHROMOPHORE SEQADV 8I4J QYG B 64 UNP Q60I25 TYR 63 CHROMOPHORE SEQADV 8I4J QYG B 64 UNP Q60I25 GLY 64 CHROMOPHORE SEQADV 8I4J GLY C -3 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J SER C -2 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J HIS C -1 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J VAL C 1 UNP Q60I25 INSERTION SEQADV 8I4J QYG C 64 UNP Q60I25 GLN 62 CHROMOPHORE SEQADV 8I4J QYG C 64 UNP Q60I25 TYR 63 CHROMOPHORE SEQADV 8I4J QYG C 64 UNP Q60I25 GLY 64 CHROMOPHORE SEQADV 8I4J GLY D -2 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J SER D -1 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J HIS D 0 UNP Q60I25 EXPRESSION TAG SEQADV 8I4J VAL D 1A UNP Q60I25 INSERTION SEQADV 8I4J QYG D 64 UNP Q60I25 GLN 62 CHROMOPHORE SEQADV 8I4J QYG D 64 UNP Q60I25 TYR 63 CHROMOPHORE SEQADV 8I4J QYG D 64 UNP Q60I25 GLY 64 CHROMOPHORE SEQRES 1 A 227 GLY SER HIS MET VAL SER VAL ILE LYS PRO GLU MET LYS SEQRES 2 A 227 ILE LYS LEU CYS MET ARG GLY THR VAL ASN GLY HIS ASN SEQRES 3 A 227 PHE VAL ILE GLU GLY GLU GLY LYS GLY ASN PRO TYR GLU SEQRES 4 A 227 GLY THR GLN ILE LEU ASP LEU ASN VAL THR GLU GLY ALA SEQRES 5 A 227 PRO LEU PRO PHE ALA TYR ASP ILE LEU THR THR VAL PHE SEQRES 6 A 227 QYG ASN ARG ALA PHE THR LYS TYR PRO ALA ASP ILE GLN SEQRES 7 A 227 ASP TYR PHE LYS GLN THR PHE PRO GLU GLY TYR HIS TRP SEQRES 8 A 227 GLU ARG SER MET THR TYR GLU ASP GLN GLY ILE CYS THR SEQRES 9 A 227 ALA THR SER ASN ILE SER MET ARG GLY ASP CYS PHE PHE SEQRES 10 A 227 TYR ASP ILE ARG PHE ASP GLY VAL ASN PHE PRO PRO ASN SEQRES 11 A 227 GLY PRO VAL MET GLN LYS LYS THR LEU LYS TRP GLU PRO SEQRES 12 A 227 SER THR GLU LYS MET TYR VAL ARG ASP GLY VAL LEU LYS SEQRES 13 A 227 GLY ASP VAL ASN MET ALA LEU LEU LEU GLU GLY GLY GLY SEQRES 14 A 227 HIS TYR ARG CYS ASP PHE LYS THR THR TYR LYS ALA LYS SEQRES 15 A 227 LYS ASP VAL ARG LEU PRO ASP TYR HIS PHE VAL ASP HIS SEQRES 16 A 227 ARG ILE GLU ILE LEU LYS HIS ASP LYS ASP TYR ASN LYS SEQRES 17 A 227 VAL LYS LEU TYR GLU ASN ALA VAL ALA ARG TYR SER MET SEQRES 18 A 227 LEU PRO SER GLN ALA LYS SEQRES 1 B 227 GLY SER HIS MET VAL SER VAL ILE LYS PRO GLU MET LYS SEQRES 2 B 227 ILE LYS LEU CYS MET ARG GLY THR VAL ASN GLY HIS ASN SEQRES 3 B 227 PHE VAL ILE GLU GLY GLU GLY LYS GLY ASN PRO TYR GLU SEQRES 4 B 227 GLY THR GLN ILE LEU ASP LEU ASN VAL THR GLU GLY ALA SEQRES 5 B 227 PRO LEU PRO PHE ALA TYR ASP ILE LEU THR THR VAL PHE SEQRES 6 B 227 QYG ASN ARG ALA PHE THR LYS TYR PRO ALA ASP ILE GLN SEQRES 7 B 227 ASP TYR PHE LYS GLN THR PHE PRO GLU GLY TYR HIS TRP SEQRES 8 B 227 GLU ARG SER MET THR TYR GLU ASP GLN GLY ILE CYS THR SEQRES 9 B 227 ALA THR SER ASN ILE SER MET ARG GLY ASP CYS PHE PHE SEQRES 10 B 227 TYR ASP ILE ARG PHE ASP GLY VAL ASN PHE PRO PRO ASN SEQRES 11 B 227 GLY PRO VAL MET GLN LYS LYS THR LEU LYS TRP GLU PRO SEQRES 12 B 227 SER THR GLU LYS MET TYR VAL ARG ASP GLY VAL LEU LYS SEQRES 13 B 227 GLY ASP VAL ASN MET ALA LEU LEU LEU GLU GLY GLY GLY SEQRES 14 B 227 HIS TYR ARG CYS ASP PHE LYS THR THR TYR LYS ALA LYS SEQRES 15 B 227 LYS ASP VAL ARG LEU PRO ASP TYR HIS PHE VAL ASP HIS SEQRES 16 B 227 ARG ILE GLU ILE LEU LYS HIS ASP LYS ASP TYR ASN LYS SEQRES 17 B 227 VAL LYS LEU TYR GLU ASN ALA VAL ALA ARG TYR SER MET SEQRES 18 B 227 LEU PRO SER GLN ALA LYS SEQRES 1 C 227 GLY SER HIS MET VAL SER VAL ILE LYS PRO GLU MET LYS SEQRES 2 C 227 ILE LYS LEU CYS MET ARG GLY THR VAL ASN GLY HIS ASN SEQRES 3 C 227 PHE VAL ILE GLU GLY GLU GLY LYS GLY ASN PRO TYR GLU SEQRES 4 C 227 GLY THR GLN ILE LEU ASP LEU ASN VAL THR GLU GLY ALA SEQRES 5 C 227 PRO LEU PRO PHE ALA TYR ASP ILE LEU THR THR VAL PHE SEQRES 6 C 227 QYG ASN ARG ALA PHE THR LYS TYR PRO ALA ASP ILE GLN SEQRES 7 C 227 ASP TYR PHE LYS GLN THR PHE PRO GLU GLY TYR HIS TRP SEQRES 8 C 227 GLU ARG SER MET THR TYR GLU ASP GLN GLY ILE CYS THR SEQRES 9 C 227 ALA THR SER ASN ILE SER MET ARG GLY ASP CYS PHE PHE SEQRES 10 C 227 TYR ASP ILE ARG PHE ASP GLY VAL ASN PHE PRO PRO ASN SEQRES 11 C 227 GLY PRO VAL MET GLN LYS LYS THR LEU LYS TRP GLU PRO SEQRES 12 C 227 SER THR GLU LYS MET TYR VAL ARG ASP GLY VAL LEU LYS SEQRES 13 C 227 GLY ASP VAL ASN MET ALA LEU LEU LEU GLU GLY GLY GLY SEQRES 14 C 227 HIS TYR ARG CYS ASP PHE LYS THR THR TYR LYS ALA LYS SEQRES 15 C 227 LYS ASP VAL ARG LEU PRO ASP TYR HIS PHE VAL ASP HIS SEQRES 16 C 227 ARG ILE GLU ILE LEU LYS HIS ASP LYS ASP TYR ASN LYS SEQRES 17 C 227 VAL LYS LEU TYR GLU ASN ALA VAL ALA ARG TYR SER MET SEQRES 18 C 227 LEU PRO SER GLN ALA LYS SEQRES 1 D 227 GLY SER HIS MET VAL SER VAL ILE LYS PRO GLU MET LYS SEQRES 2 D 227 ILE LYS LEU CYS MET ARG GLY THR VAL ASN GLY HIS ASN SEQRES 3 D 227 PHE VAL ILE GLU GLY GLU GLY LYS GLY ASN PRO TYR GLU SEQRES 4 D 227 GLY THR GLN ILE LEU ASP LEU ASN VAL THR GLU GLY ALA SEQRES 5 D 227 PRO LEU PRO PHE ALA TYR ASP ILE LEU THR THR VAL PHE SEQRES 6 D 227 QYG ASN ARG ALA PHE THR LYS TYR PRO ALA ASP ILE GLN SEQRES 7 D 227 ASP TYR PHE LYS GLN THR PHE PRO GLU GLY TYR HIS TRP SEQRES 8 D 227 GLU ARG SER MET THR TYR GLU ASP GLN GLY ILE CYS THR SEQRES 9 D 227 ALA THR SER ASN ILE SER MET ARG GLY ASP CYS PHE PHE SEQRES 10 D 227 TYR ASP ILE ARG PHE ASP GLY VAL ASN PHE PRO PRO ASN SEQRES 11 D 227 GLY PRO VAL MET GLN LYS LYS THR LEU LYS TRP GLU PRO SEQRES 12 D 227 SER THR GLU LYS MET TYR VAL ARG ASP GLY VAL LEU LYS SEQRES 13 D 227 GLY ASP VAL ASN MET ALA LEU LEU LEU GLU GLY GLY GLY SEQRES 14 D 227 HIS TYR ARG CYS ASP PHE LYS THR THR TYR LYS ALA LYS SEQRES 15 D 227 LYS ASP VAL ARG LEU PRO ASP TYR HIS PHE VAL ASP HIS SEQRES 16 D 227 ARG ILE GLU ILE LEU LYS HIS ASP LYS ASP TYR ASN LYS SEQRES 17 D 227 VAL LYS LEU TYR GLU ASN ALA VAL ALA ARG TYR SER MET SEQRES 18 D 227 LEU PRO SER GLN ALA LYS MODRES 8I4J QYG A 64 GLN CHROMOPHORE MODRES 8I4J QYG A 64 TYR CHROMOPHORE MODRES 8I4J QYG A 64 GLY CHROMOPHORE MODRES 8I4J QYG B 64 GLN CHROMOPHORE MODRES 8I4J QYG B 64 TYR CHROMOPHORE MODRES 8I4J QYG B 64 GLY CHROMOPHORE MODRES 8I4J QYG C 64 GLN CHROMOPHORE MODRES 8I4J QYG C 64 TYR CHROMOPHORE MODRES 8I4J QYG C 64 GLY CHROMOPHORE MODRES 8I4J QYG D 64 GLN CHROMOPHORE MODRES 8I4J QYG D 64 TYR CHROMOPHORE MODRES 8I4J QYG D 64 GLY CHROMOPHORE HET QYG A 64 24 HET QYG B 64 24 HET QYG C 64 24 HET QYG D 64 24 HETNAM QYG {(4E)-2-[(1S)-1,4-DIAMINO-4-OXOBUTYL]-4-[(4- HETNAM 2 QYG HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H- HETNAM 3 QYG IMIDAZOL-1-YL}ACETIC ACID FORMUL 1 QYG 4(C16 H18 N4 O5) FORMUL 5 HOH *1340(H2 O) HELIX 1 AA1 TYR A 54 THR A 59 1 6 HELIX 2 AA2 ASP A 77 THR A 82 1 6 HELIX 3 AA3 TYR B 54 THR B 59 1 6 HELIX 4 AA4 ASP B 77 THR B 82 1 6 HELIX 5 AA5 TYR C 54 THR C 59 1 6 HELIX 6 AA6 ASP C 77 THR C 82 1 6 HELIX 7 AA7 TYR D 54 THR D 59 1 6 HELIX 8 AA8 PHE D 79 PHE D 83 5 5 SHEET 1 AA113 THR A 136 TRP A 139 0 SHEET 2 AA113 VAL A 152 LEU A 163 -1 O LEU A 162 N LEU A 137 SHEET 3 AA113 HIS A 168 ALA A 179 -1 O TYR A 177 N LEU A 153 SHEET 4 AA113 TYR A 87 TYR A 95 -1 N HIS A 88 O LYS A 178 SHEET 5 AA113 ILE A 100 ARG A 110 -1 O ILE A 107 N TYR A 87 SHEET 6 AA113 CYS A 113 VAL A 123 -1 O ASP A 121 N THR A 102 SHEET 7 AA113 MET A 8 VAL A 18 1 N LYS A 9 O PHE A 114 SHEET 8 AA113 HIS A 21 ASN A 32 -1 O ILE A 25 N MET A 14 SHEET 9 AA113 THR A 37 GLU A 46 -1 O ASN A 43 N GLU A 26 SHEET 10 AA113 LYS A 206 ARG A 216 -1 O VAL A 207 N LEU A 42 SHEET 11 AA113 HIS A 189 HIS A 200 -1 N LYS A 199 O LYS A 208 SHEET 12 AA113 SER A 142 ARG A 149 -1 N GLU A 144 O VAL A 191 SHEET 13 AA113 VAL A 152 LEU A 163 -1 O ASP A 156 N LYS A 145 SHEET 1 AA213 THR B 136 TRP B 139 0 SHEET 2 AA213 VAL B 152 LEU B 163 -1 O LEU B 162 N LEU B 137 SHEET 3 AA213 HIS B 168 ALA B 179 -1 O TYR B 177 N LEU B 153 SHEET 4 AA213 TYR B 87 TYR B 95 -1 N HIS B 88 O LYS B 178 SHEET 5 AA213 ILE B 100 ARG B 110 -1 O CYS B 101 N MET B 93 SHEET 6 AA213 CYS B 113 VAL B 123 -1 O VAL B 123 N ILE B 100 SHEET 7 AA213 MET B 8 VAL B 18 1 N LYS B 9 O PHE B 114 SHEET 8 AA213 HIS B 21 ASN B 32 -1 O ILE B 25 N MET B 14 SHEET 9 AA213 THR B 37 GLU B 46 -1 O ASN B 43 N GLU B 26 SHEET 10 AA213 LYS B 206 ARG B 216 -1 O VAL B 207 N LEU B 42 SHEET 11 AA213 HIS B 189 HIS B 200 -1 N GLU B 196 O TYR B 210 SHEET 12 AA213 SER B 142 ARG B 149 -1 N GLU B 144 O VAL B 191 SHEET 13 AA213 VAL B 152 LEU B 163 -1 O LYS B 154 N TYR B 147 SHEET 1 AA313 THR C 136 TRP C 139 0 SHEET 2 AA313 VAL C 152 LEU C 163 -1 O LEU C 162 N LEU C 137 SHEET 3 AA313 HIS C 168 ALA C 179 -1 O TYR C 177 N LEU C 153 SHEET 4 AA313 TYR C 87 TYR C 95 -1 N HIS C 88 O LYS C 178 SHEET 5 AA313 ILE C 100 ARG C 110 -1 O CYS C 101 N MET C 93 SHEET 6 AA313 CYS C 113 VAL C 123 -1 O VAL C 123 N ILE C 100 SHEET 7 AA313 MET C 8 VAL C 18 1 N LYS C 9 O PHE C 114 SHEET 8 AA313 HIS C 21 ASN C 32 -1 O ILE C 25 N MET C 14 SHEET 9 AA313 THR C 37 GLU C 46 -1 O ASN C 43 N GLU C 26 SHEET 10 AA313 LYS C 206 ARG C 216 -1 O VAL C 207 N LEU C 42 SHEET 11 AA313 HIS C 189 HIS C 200 -1 N GLU C 196 O TYR C 210 SHEET 12 AA313 SER C 142 ARG C 149 -1 N GLU C 144 O VAL C 191 SHEET 13 AA313 VAL C 152 LEU C 163 -1 O LYS C 154 N TYR C 147 SHEET 1 AA413 THR D 136 TRP D 139 0 SHEET 2 AA413 VAL D 152 LEU D 163 -1 O LEU D 162 N LEU D 137 SHEET 3 AA413 HIS D 168 ALA D 179 -1 O TYR D 177 N LEU D 153 SHEET 4 AA413 TYR D 87 TYR D 95 -1 N HIS D 88 O LYS D 178 SHEET 5 AA413 ILE D 100 ARG D 110 -1 O ILE D 107 N TYR D 87 SHEET 6 AA413 CYS D 113 VAL D 123 -1 O VAL D 123 N ILE D 100 SHEET 7 AA413 MET D 8 VAL D 18 1 N LYS D 9 O PHE D 114 SHEET 8 AA413 HIS D 21 ASN D 32 -1 O ILE D 25 N MET D 14 SHEET 9 AA413 THR D 37 GLU D 46 -1 O ASP D 41 N GLU D 28 SHEET 10 AA413 LYS D 206 ARG D 216 -1 O VAL D 207 N LEU D 42 SHEET 11 AA413 HIS D 189 HIS D 200 -1 N GLU D 196 O TYR D 210 SHEET 12 AA413 SER D 142 ARG D 149 -1 N GLU D 144 O VAL D 191 SHEET 13 AA413 VAL D 152 LEU D 163 -1 O ASP D 156 N LYS D 145 LINK C PHE A 61 N1 QYG A 64 1555 1555 1.42 LINK C3 QYG A 64 N ASN A 65 1555 1555 1.42 LINK C PHE B 61 N1 QYG B 64 1555 1555 1.42 LINK C3 QYG B 64 N ASN B 65 1555 1555 1.41 LINK C PHE C 61 N1 QYG C 64 1555 1555 1.42 LINK C3 QYG C 64 N ASN C 65 1555 1555 1.42 LINK C PHE D 61 N1 QYG D 64 1555 1555 1.42 LINK C3 QYG D 64 N ASN D 65 1555 1555 1.42 CISPEP 1 ALA A 48 PRO A 49 0 -9.48 CISPEP 2 PHE A 83 PRO A 84 0 9.29 CISPEP 3 ALA B 48 PRO B 49 0 -4.57 CISPEP 4 PHE B 83 PRO B 84 0 8.19 CISPEP 5 ALA C 48 PRO C 49 0 -6.25 CISPEP 6 PHE C 83 PRO C 84 0 11.27 CISPEP 7 ALA D 48 PRO D 49 0 -5.07 CISPEP 8 PHE D 83 PRO D 84 0 8.64 CRYST1 64.790 71.350 196.050 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015434 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005101 0.00000