HEADER TRANSCRIPTION 23-JAN-23 8I53 TITLE SOLUTION STRUCTURE OF THE PH DOMAIN FROM THE TFB1 SUBUNIT OF FISSION TITLE 2 YEAST TFIIH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT COMPND 3 TFB1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TFIIH SUBUNIT TFB1,RNA POLYMERASE II TRANSCRIPTION FACTOR B COMPND 6 73 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT, COMPND 7 RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: TFB1, SPAC16E8.11C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR NUCLEOTIDE EXCISION REPAIR FACTOR NUCLEAR KEYWDS 2 PROTEIN, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.OKUDA,Y.NISHIMURA REVDAT 2 15-MAY-24 8I53 1 REMARK REVDAT 1 01-NOV-23 8I53 0 JRNL AUTH M.OKUDA,Y.NISHIMURA JRNL TITL STRUCTURAL POLYMORPHISM OF THE PH DOMAIN IN TFIIH. JRNL REF BIOSCI.REP. V. 43 2023 JRNL REFN ISSN 0144-8463 JRNL PMID 37340985 JRNL DOI 10.1042/BSR20230846 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300033536. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-15N] TFB1, 90% H2O/10% REMARK 210 D2O; 0.9 MM [U-13C; U-15N] TFB1, REMARK 210 90% H2O/10% D2O; 0.9 MM [U-13C; REMARK 210 U-15N] TFB1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HN(CO) REMARK 210 CA; 3D HNCO; 3D HN(CA)CO; 3D REMARK 210 HBHA(CO)NH; 3D HBHANH; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 3D HN(CO)HB; 3D REMARK 210 HNHB; 3D HN(CO)CG; 3D HNCG; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, MAGRO, NMRVIEWJ REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG21 VAL A 36 HE2 PHE A 75 1.23 REMARK 500 HD13 ILE A 20 HD12 LEU A 94 1.29 REMARK 500 HD11 LEU A 18 HB2 TRP A 26 1.31 REMARK 500 HZ3 LYS A 65 OE1 GLU A 68 1.54 REMARK 500 HZ2 LYS A 14 OE1 GLU A 29 1.56 REMARK 500 H MET A 1 OD2 ASP A 21 1.57 REMARK 500 OE2 GLU A 29 HZ2 LYS A 31 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 7 111.02 -169.26 REMARK 500 1 SER A 22 -19.71 69.08 REMARK 500 1 ASN A 45 173.68 179.86 REMARK 500 1 PRO A 50 33.45 -76.60 REMARK 500 1 ALA A 51 -61.80 66.73 REMARK 500 1 GLU A 66 114.92 -35.14 REMARK 500 1 GLU A 68 -147.99 -141.05 REMARK 500 2 ASP A 3 -169.36 -101.48 REMARK 500 2 ALA A 7 111.20 -169.92 REMARK 500 2 SER A 22 -20.57 68.27 REMARK 500 2 ASN A 45 173.53 179.80 REMARK 500 2 ALA A 51 43.92 -75.49 REMARK 500 2 SER A 52 31.85 -154.81 REMARK 500 2 ASN A 82 45.88 -99.07 REMARK 500 2 SER A 107 -49.20 -171.35 REMARK 500 3 SER A 22 -17.20 66.69 REMARK 500 3 ASN A 45 174.42 179.35 REMARK 500 3 PRO A 50 21.07 -76.36 REMARK 500 3 ALA A 51 -57.64 68.54 REMARK 500 3 GLU A 68 -152.31 -148.82 REMARK 500 3 ASN A 82 53.19 -115.20 REMARK 500 4 ARG A 4 105.23 -164.57 REMARK 500 4 ALA A 7 111.46 -163.40 REMARK 500 4 SER A 22 -16.03 68.15 REMARK 500 4 ASN A 45 173.50 179.55 REMARK 500 4 LYS A 55 66.56 -170.65 REMARK 500 4 GLU A 66 131.07 -34.98 REMARK 500 4 GLU A 68 -159.54 -167.85 REMARK 500 4 ASN A 82 41.28 -105.17 REMARK 500 4 GLN A 106 59.37 -95.37 REMARK 500 4 SER A 107 89.40 -68.95 REMARK 500 5 ASP A 3 32.49 -87.64 REMARK 500 5 ALA A 7 111.40 -164.12 REMARK 500 5 SER A 22 -19.57 68.37 REMARK 500 5 ASN A 45 174.13 179.47 REMARK 500 5 SER A 52 49.60 -87.17 REMARK 500 5 ASN A 82 43.68 -100.77 REMARK 500 5 SER A 105 65.83 -153.50 REMARK 500 6 ALA A 7 111.41 -161.62 REMARK 500 6 SER A 22 -18.34 69.34 REMARK 500 6 ALA A 51 -59.09 69.21 REMARK 500 6 PRO A 54 62.94 -67.81 REMARK 500 6 LYS A 55 138.09 170.75 REMARK 500 6 GLU A 68 -154.60 -138.46 REMARK 500 6 SER A 105 -61.12 70.19 REMARK 500 6 GLN A 106 -65.50 69.70 REMARK 500 6 SER A 107 19.52 -148.66 REMARK 500 7 ASP A 3 -137.82 -112.95 REMARK 500 7 SER A 22 -25.21 70.19 REMARK 500 7 ASN A 45 173.57 179.92 REMARK 500 REMARK 500 THIS ENTRY HAS 156 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36546 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE PH DOMAIN FROM THE TFB1 SUBUNIT OF REMARK 900 FISSION YEAST TFIIH DBREF 8I53 A 1 108 UNP O13745 TFB1_SCHPO 1 108 SEQADV 8I53 GLY A -2 UNP O13745 EXPRESSION TAG SEQADV 8I53 SER A -1 UNP O13745 EXPRESSION TAG SEQADV 8I53 HIS A 0 UNP O13745 EXPRESSION TAG SEQRES 1 A 111 GLY SER HIS MET GLY ASP ARG VAL GLU ALA LEU ALA ILE SEQRES 2 A 111 PHE ARG LYS LYS GLN GLY VAL LEU SER ILE ASP SER ARG SEQRES 3 A 111 LEU LYS TRP THR GLY GLU GLY LYS THR THR PRO SER VAL SEQRES 4 A 111 ASP ILE ALA PHE ASP ALA ILE SER ASN LEU GLN THR THR SEQRES 5 A 111 PRO ALA SER ASN PRO LYS VAL MET ILE ARG VAL PHE ILE SEQRES 6 A 111 VAL VAL LYS GLU GLY GLU ASP PRO THR SER LEU VAL PHE SEQRES 7 A 111 HIS PHE THR GLY THR PRO ASN ALA ARG GLU ASN CYS ASP SEQRES 8 A 111 MET ILE THR ASN GLU LEU ARG ASN ALA ILE GLN ARG GLN SEQRES 9 A 111 ARG GLU GLY SER GLN SER LYS HELIX 1 AA1 THR A 78 THR A 80 5 3 HELIX 2 AA2 ASN A 82 GLY A 104 1 23 SHEET 1 AA1 7 PRO A 34 ALA A 39 0 SHEET 2 AA1 7 ARG A 23 THR A 27 -1 N TRP A 26 O VAL A 36 SHEET 3 AA1 7 GLN A 15 ILE A 20 -1 N SER A 19 O LYS A 25 SHEET 4 AA1 7 GLU A 6 PHE A 11 -1 N ALA A 9 O GLY A 16 SHEET 5 AA1 7 THR A 71 HIS A 76 -1 O HIS A 76 N ILE A 10 SHEET 6 AA1 7 MET A 57 ILE A 62 -1 N ILE A 62 O THR A 71 SHEET 7 AA1 7 ILE A 43 THR A 48 -1 N GLN A 47 O ARG A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1