HEADER BIOSYNTHETIC PROTEIN 24-JAN-23 8I58 TITLE UROPORPHYRIN I (UPI)-BOUND CFBA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIROHYDROCHLORIN COBALTOCHELATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CBIXS,SIROHYDROCHLORIN NICKELCHELATASE; COMPND 5 EC: 4.99.1.3,4.99.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 GENE: CBIX, CFBA, MJ0970; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CHELATASE, NICKEL, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.OGAWA,T.FUJISHIRO REVDAT 1 31-JAN-24 8I58 0 JRNL AUTH S.OGAWA,M.HIKITA,T.FUJISHIRO JRNL TITL SUBSTRATE SELECTIVITY OF CFBA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6700 - 4.4600 1.00 2306 121 0.1514 0.1892 REMARK 3 2 4.4500 - 3.5400 1.00 2269 120 0.1527 0.2145 REMARK 3 3 3.5300 - 3.0900 1.00 2259 119 0.1789 0.2326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1999 REMARK 3 ANGLE : 2.308 2711 REMARK 3 CHIRALITY : 0.126 311 REMARK 3 PLANARITY : 0.028 347 REMARK 3 DIHEDRAL : 6.942 290 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1697 23.1355 15.3795 REMARK 3 T TENSOR REMARK 3 T11: 0.4245 T22: 0.6918 REMARK 3 T33: 0.5242 T12: 0.0081 REMARK 3 T13: 0.0157 T23: -0.0969 REMARK 3 L TENSOR REMARK 3 L11: 0.0007 L22: 0.8213 REMARK 3 L33: 0.1285 L12: 0.0887 REMARK 3 L13: 0.0524 L23: 0.3396 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: 0.7365 S13: 0.6911 REMARK 3 S21: -0.2069 S22: 0.6032 S23: 0.3033 REMARK 3 S31: -0.5012 S32: 1.1902 S33: -0.0070 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0829 22.3757 6.6982 REMARK 3 T TENSOR REMARK 3 T11: 0.6143 T22: 0.7387 REMARK 3 T33: 0.8690 T12: -0.0955 REMARK 3 T13: -0.0706 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 0.6608 L22: 1.1649 REMARK 3 L33: 0.8043 L12: -0.2574 REMARK 3 L13: -0.7236 L23: 0.4079 REMARK 3 S TENSOR REMARK 3 S11: -0.9142 S12: 0.0939 S13: -0.2125 REMARK 3 S21: 1.3806 S22: 0.3689 S23: 0.6851 REMARK 3 S31: -0.0665 S32: 0.7898 S33: -0.0276 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6651 13.2976 11.9046 REMARK 3 T TENSOR REMARK 3 T11: 0.5149 T22: 0.5449 REMARK 3 T33: 0.4888 T12: 0.0209 REMARK 3 T13: 0.0521 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 0.4176 L22: 0.4688 REMARK 3 L33: 0.8236 L12: 0.0415 REMARK 3 L13: -0.3470 L23: 0.3602 REMARK 3 S TENSOR REMARK 3 S11: 0.2817 S12: 0.4330 S13: -0.2442 REMARK 3 S21: 0.4343 S22: -0.1746 S23: 0.2122 REMARK 3 S31: 0.3383 S32: -0.1514 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3001 22.4427 15.0553 REMARK 3 T TENSOR REMARK 3 T11: 0.3883 T22: 0.7542 REMARK 3 T33: 0.4756 T12: 0.1962 REMARK 3 T13: 0.0095 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 1.4659 L22: 2.4455 REMARK 3 L33: 2.1077 L12: 1.9046 REMARK 3 L13: 0.9843 L23: 1.0866 REMARK 3 S TENSOR REMARK 3 S11: 0.4180 S12: -0.5682 S13: 0.9705 REMARK 3 S21: -0.5028 S22: -0.4594 S23: -0.2068 REMARK 3 S31: 0.1105 S32: 0.3204 S33: -0.0015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8650 28.5633 20.8709 REMARK 3 T TENSOR REMARK 3 T11: 0.6014 T22: 0.8218 REMARK 3 T33: 0.5951 T12: 0.1012 REMARK 3 T13: -0.0456 T23: -0.1441 REMARK 3 L TENSOR REMARK 3 L11: 0.4975 L22: 0.2593 REMARK 3 L33: 0.2698 L12: 0.1315 REMARK 3 L13: -0.2705 L23: 0.1073 REMARK 3 S TENSOR REMARK 3 S11: -0.3852 S12: -1.3580 S13: 0.2729 REMARK 3 S21: 0.4181 S22: 0.3000 S23: 0.6559 REMARK 3 S31: 0.2879 S32: -1.0940 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1152 25.6643 10.4514 REMARK 3 T TENSOR REMARK 3 T11: 0.2989 T22: 0.7490 REMARK 3 T33: 0.4574 T12: -0.1009 REMARK 3 T13: 0.0088 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.1084 L22: 2.7139 REMARK 3 L33: 0.2347 L12: -0.1600 REMARK 3 L13: -0.0235 L23: 0.7515 REMARK 3 S TENSOR REMARK 3 S11: -0.1876 S12: -0.7991 S13: 0.5712 REMARK 3 S21: -0.2303 S22: -0.6250 S23: -0.0466 REMARK 3 S31: -0.3290 S32: 0.4207 S33: -0.2209 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6990 35.6246 10.7838 REMARK 3 T TENSOR REMARK 3 T11: 0.7096 T22: 0.4682 REMARK 3 T33: 0.3912 T12: -0.0672 REMARK 3 T13: -0.0312 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.4752 L22: 1.3540 REMARK 3 L33: 1.4090 L12: -1.0555 REMARK 3 L13: -1.1143 L23: 1.4056 REMARK 3 S TENSOR REMARK 3 S11: -0.1934 S12: 0.5046 S13: 0.5965 REMARK 3 S21: -0.4254 S22: 0.4594 S23: 0.1342 REMARK 3 S31: -1.3657 S32: 1.1578 S33: 0.0506 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8189 25.7993 4.9398 REMARK 3 T TENSOR REMARK 3 T11: 0.5096 T22: 0.6993 REMARK 3 T33: 0.6878 T12: -0.1233 REMARK 3 T13: 0.0566 T23: 0.0699 REMARK 3 L TENSOR REMARK 3 L11: 2.0543 L22: 0.5452 REMARK 3 L33: 0.0079 L12: -1.0575 REMARK 3 L13: -0.1653 L23: 0.0943 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: 0.2371 S13: 0.3029 REMARK 3 S21: 0.1545 S22: 0.0980 S23: 0.2475 REMARK 3 S31: -0.0045 S32: 1.2415 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7955 7.5076 -6.0420 REMARK 3 T TENSOR REMARK 3 T11: 0.6188 T22: 0.4404 REMARK 3 T33: 0.5542 T12: 0.1264 REMARK 3 T13: 0.0363 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 1.2182 L22: 0.5850 REMARK 3 L33: 0.7955 L12: -0.8525 REMARK 3 L13: -0.9885 L23: 0.6837 REMARK 3 S TENSOR REMARK 3 S11: 0.4246 S12: -0.5951 S13: -0.6089 REMARK 3 S21: 0.1441 S22: -0.3021 S23: -0.5188 REMARK 3 S31: 0.7199 S32: 0.5074 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5979 19.1837 -12.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.6384 T22: 0.4262 REMARK 3 T33: 0.5268 T12: -0.0434 REMARK 3 T13: 0.0193 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 0.7704 L22: 0.0031 REMARK 3 L33: 1.4969 L12: -0.1109 REMARK 3 L13: 1.1617 L23: -0.1366 REMARK 3 S TENSOR REMARK 3 S11: 0.3929 S12: -0.1564 S13: 0.1757 REMARK 3 S21: 0.7819 S22: -0.7999 S23: 0.5070 REMARK 3 S31: 0.7691 S32: -0.0891 S33: -0.0039 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1155 18.7815 -12.9159 REMARK 3 T TENSOR REMARK 3 T11: 0.6032 T22: 0.5558 REMARK 3 T33: 0.5325 T12: 0.0648 REMARK 3 T13: 0.1041 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.8278 L22: 0.1904 REMARK 3 L33: 0.6116 L12: 0.2146 REMARK 3 L13: 0.6766 L23: 0.0878 REMARK 3 S TENSOR REMARK 3 S11: -0.2280 S12: 0.3814 S13: 0.3902 REMARK 3 S21: -0.3801 S22: 0.4424 S23: -0.1172 REMARK 3 S31: -0.6406 S32: 0.7026 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9498 18.1045 -16.1025 REMARK 3 T TENSOR REMARK 3 T11: 0.8017 T22: 0.4394 REMARK 3 T33: 0.5925 T12: 0.0852 REMARK 3 T13: 0.0287 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 1.3043 L22: 1.0933 REMARK 3 L33: 2.3136 L12: 0.8797 REMARK 3 L13: 0.3840 L23: 0.7912 REMARK 3 S TENSOR REMARK 3 S11: -0.2004 S12: 0.0840 S13: 0.1444 REMARK 3 S21: -0.9198 S22: 0.1156 S23: 0.9436 REMARK 3 S31: -0.0080 S32: 0.1869 S33: -0.0033 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8158 16.5587 -21.8437 REMARK 3 T TENSOR REMARK 3 T11: 0.8532 T22: 0.6643 REMARK 3 T33: 0.6473 T12: 0.1533 REMARK 3 T13: -0.1906 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 0.4700 L22: 0.4079 REMARK 3 L33: 0.3648 L12: -0.2455 REMARK 3 L13: -0.3218 L23: 0.3730 REMARK 3 S TENSOR REMARK 3 S11: 0.7944 S12: 1.2916 S13: 0.8600 REMARK 3 S21: -1.7225 S22: -0.5344 S23: -0.0738 REMARK 3 S31: -1.0565 S32: -0.4312 S33: 0.0219 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9388 14.4765 -8.8224 REMARK 3 T TENSOR REMARK 3 T11: 0.6620 T22: 0.3576 REMARK 3 T33: 0.4661 T12: -0.0455 REMARK 3 T13: -0.0584 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 3.5302 L22: 1.0341 REMARK 3 L33: 2.0431 L12: -1.1057 REMARK 3 L13: 2.1933 L23: -1.4461 REMARK 3 S TENSOR REMARK 3 S11: 0.1782 S12: -0.9207 S13: 0.2740 REMARK 3 S21: -0.6496 S22: 0.2050 S23: 0.0382 REMARK 3 S31: 0.5216 S32: -1.3664 S33: 0.1691 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6596 9.9661 -11.4645 REMARK 3 T TENSOR REMARK 3 T11: 0.6451 T22: 0.5577 REMARK 3 T33: 0.3941 T12: -0.1810 REMARK 3 T13: 0.0162 T23: 0.0721 REMARK 3 L TENSOR REMARK 3 L11: 0.2207 L22: 0.3528 REMARK 3 L33: 0.7644 L12: -0.2401 REMARK 3 L13: 0.5594 L23: -0.4403 REMARK 3 S TENSOR REMARK 3 S11: 0.5841 S12: -0.3567 S13: -0.4844 REMARK 3 S21: 0.1153 S22: 0.1201 S23: -0.4172 REMARK 3 S31: 1.3270 S32: -0.4776 S33: 0.1260 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 130 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8812 15.5807 5.0301 REMARK 3 T TENSOR REMARK 3 T11: 0.4991 T22: 0.6670 REMARK 3 T33: 0.4943 T12: 0.1420 REMARK 3 T13: 0.0232 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 0.6355 L22: 0.9551 REMARK 3 L33: 0.9559 L12: -0.6735 REMARK 3 L13: 0.7723 L23: -0.7177 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: 0.7530 S13: -0.1101 REMARK 3 S21: -0.5044 S22: 0.2285 S23: 0.0989 REMARK 3 S31: 0.5935 S32: 1.1701 S33: 0.0025 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300034968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7206 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.18200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M NA-MALONATE, 0.1M TRIS-HCL, 8% REMARK 280 (W/V) GAMMA-PGA, PH 7.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.71000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.85500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.56500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 88 REMARK 465 ASP A 89 REMARK 465 ASN A 90 REMARK 465 HIS A 91 REMARK 465 GLU A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 GLU A 96 REMARK 465 HIS A 97 REMARK 465 SER A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 GLU A 108 REMARK 465 HIS A 109 REMARK 465 GLU A 110 REMARK 465 LYS A 111 REMARK 465 ASP B 89 REMARK 465 ASN B 90 REMARK 465 HIS B 91 REMARK 465 GLU B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 GLU B 96 REMARK 465 HIS B 97 REMARK 465 SER B 98 REMARK 465 HIS B 99 REMARK 465 HIS B 100 REMARK 465 HIS B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 GLU B 108 REMARK 465 HIS B 109 REMARK 465 GLU B 110 REMARK 465 LYS B 111 REMARK 465 LEU B 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 43 -31.69 73.15 REMARK 500 PHE B 43 -17.59 71.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 34 -11.29 REMARK 500 SER A 44 11.02 REMARK 500 ARG A 123 17.60 REMARK 500 ALA A 128 10.96 REMARK 500 ARG B 12 14.91 REMARK 500 GLU B 29 11.81 REMARK 500 PRO B 34 -12.74 REMARK 500 SER B 44 10.34 REMARK 500 ILE B 114 -15.33 REMARK 500 ASP B 117 13.24 REMARK 500 ARG B 123 12.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 8I58 A 1 143 UNP Q58380 CFBA_METJA 1 143 DBREF 8I58 B 1 143 UNP Q58380 CFBA_METJA 1 143 SEQRES 1 A 143 MET GLU ALA LEU VAL LEU VAL GLY HIS GLY SER ARG LEU SEQRES 2 A 143 PRO TYR SER LYS GLU LEU LEU VAL LYS LEU ALA GLU LYS SEQRES 3 A 143 VAL LYS GLU ARG ASN LEU PHE PRO ILE VAL GLU ILE GLY SEQRES 4 A 143 LEU MET GLU PHE SER GLU PRO THR ILE PRO GLN ALA VAL SEQRES 5 A 143 LYS LYS ALA ILE GLU GLN GLY ALA LYS ARG ILE ILE VAL SEQRES 6 A 143 VAL PRO VAL PHE LEU ALA HIS GLY ILE HIS THR THR ARG SEQRES 7 A 143 ASP ILE PRO ARG LEU LEU GLY LEU ILE GLU ASP ASN HIS SEQRES 8 A 143 GLU HIS HIS HIS GLU HIS SER HIS HIS HIS HIS HIS HIS SEQRES 9 A 143 HIS HIS HIS GLU HIS GLU LYS LEU GLU ILE PRO GLU ASP SEQRES 10 A 143 VAL GLU ILE ILE TYR ARG GLU PRO ILE GLY ALA ASP ASP SEQRES 11 A 143 ARG ILE VAL ASP ILE ILE ILE ASP ARG ALA PHE GLY ARG SEQRES 1 B 143 MET GLU ALA LEU VAL LEU VAL GLY HIS GLY SER ARG LEU SEQRES 2 B 143 PRO TYR SER LYS GLU LEU LEU VAL LYS LEU ALA GLU LYS SEQRES 3 B 143 VAL LYS GLU ARG ASN LEU PHE PRO ILE VAL GLU ILE GLY SEQRES 4 B 143 LEU MET GLU PHE SER GLU PRO THR ILE PRO GLN ALA VAL SEQRES 5 B 143 LYS LYS ALA ILE GLU GLN GLY ALA LYS ARG ILE ILE VAL SEQRES 6 B 143 VAL PRO VAL PHE LEU ALA HIS GLY ILE HIS THR THR ARG SEQRES 7 B 143 ASP ILE PRO ARG LEU LEU GLY LEU ILE GLU ASP ASN HIS SEQRES 8 B 143 GLU HIS HIS HIS GLU HIS SER HIS HIS HIS HIS HIS HIS SEQRES 9 B 143 HIS HIS HIS GLU HIS GLU LYS LEU GLU ILE PRO GLU ASP SEQRES 10 B 143 VAL GLU ILE ILE TYR ARG GLU PRO ILE GLY ALA ASP ASP SEQRES 11 B 143 ARG ILE VAL ASP ILE ILE ILE ASP ARG ALA PHE GLY ARG HET UPI A 201 60 HETNAM UPI 3-[(1Z,9Z)-3,8,13,18-TETRAKIS(2-HYDROXY-2-OXOETHYL)-7, HETNAM 2 UPI 12,17-TRIS(3-HYDROXY-3-OXOPROPYL)-21,23- HETNAM 3 UPI DIHYDROPORPHYRIN-2-YL]PROPANOIC ACID HETSYN UPI UROPORPHYRIN I FORMUL 3 UPI C40 H38 N4 O16 FORMUL 4 HOH *7(H2 O) HELIX 1 AA1 PRO A 14 GLU A 29 1 16 HELIX 2 AA2 THR A 47 GLN A 58 1 12 HELIX 3 AA3 GLY A 73 ARG A 78 1 6 HELIX 4 AA4 ARG A 78 LEU A 84 1 7 HELIX 5 AA5 ASP A 129 PHE A 141 1 13 HELIX 6 AA6 PRO B 14 GLU B 29 1 16 HELIX 7 AA7 THR B 47 GLN B 58 1 12 HELIX 8 AA8 GLY B 73 ARG B 78 1 6 HELIX 9 AA9 ARG B 78 LEU B 84 1 7 HELIX 10 AB1 ASP B 129 PHE B 141 1 13 SHEET 1 AA1 4 ILE A 35 LEU A 40 0 SHEET 2 AA1 4 GLU A 2 GLY A 8 1 N LEU A 6 O GLU A 37 SHEET 3 AA1 4 ARG A 62 PRO A 67 1 O ILE A 64 N ALA A 3 SHEET 4 AA1 4 GLU A 119 TYR A 122 1 O ILE A 121 N ILE A 63 SHEET 1 AA2 4 ILE B 35 LEU B 40 0 SHEET 2 AA2 4 GLU B 2 GLY B 8 1 N LEU B 6 O GLU B 37 SHEET 3 AA2 4 ARG B 62 PRO B 67 1 O ILE B 64 N ALA B 3 SHEET 4 AA2 4 GLU B 119 TYR B 122 1 O ILE B 121 N ILE B 63 CISPEP 1 GLU A 45 PRO A 46 0 -1.40 CISPEP 2 GLU B 45 PRO B 46 0 -8.48 CRYST1 68.810 68.810 83.420 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011988 0.00000