HEADER SUGAR BINDING PROTEIN 25-JAN-23 8I5K TITLE CRYSTAL STRUCTURE OF CHITIN OLIGOSACCHARIDE BINDING PROTEIN FROM TITLE 2 VIBRIO CHOLERA IN COMPLEX WITH CHITOTRIOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE/NICKEL TRANSPORT SYSTEM SUBSTRATE-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: APPA_1, APPA, D6U24_16190, ERS013201_01979, ERS013202_02445, SOURCE 5 EYB64_10090, F0H40_11710, F0M16_04225, FLM12_17525; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHITIN OLIGOSACCHARIDE, PERIPLASMIC, SOLUTE BINDING PROTEIN, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.OHNUMA,D.TAKESHITA REVDAT 1 03-JAN-24 8I5K 0 JRNL AUTH T.OHNUMA,J.TSUJII,C.KATAOKA,T.YOSHIMOTO,D.TAKESHITA, JRNL AUTH 2 O.LAMPELA,A.H.JUFFER,W.SUGINTA,T.FUKAMIZO JRNL TITL PERIPLASMIC CHITOOLIGOSACCHARIDE-BINDING PROTEIN REQUIRES A JRNL TITL 2 THREE-DOMAIN ORGANIZATION FOR SUBSTRATE TRANSLOCATION. JRNL REF SCI REP V. 13 20558 2023 JRNL REFN ESSN 2045-2322 JRNL PMID 37996461 JRNL DOI 10.1038/S41598-023-47253-Y REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 NUMBER OF REFLECTIONS : 237863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 11855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.3070 - 3.7798 0.98 8659 499 0.1466 0.1514 REMARK 3 2 3.7798 - 3.0038 0.98 8728 451 0.1466 0.1659 REMARK 3 3 3.0038 - 2.6252 0.98 8741 465 0.1609 0.1800 REMARK 3 4 2.6252 - 2.3856 0.98 8708 435 0.1645 0.1901 REMARK 3 5 2.3856 - 2.2149 0.95 8471 426 0.1616 0.1660 REMARK 3 6 2.2149 - 2.0845 0.97 8556 458 0.1524 0.1863 REMARK 3 7 2.0845 - 1.9802 0.97 8519 496 0.1600 0.1806 REMARK 3 8 1.9802 - 1.8941 0.97 8684 442 0.1650 0.1986 REMARK 3 9 1.8941 - 1.8212 0.97 8613 455 0.1730 0.1788 REMARK 3 10 1.8212 - 1.7584 0.98 8706 402 0.1709 0.1856 REMARK 3 11 1.7584 - 1.7035 0.97 8644 478 0.1704 0.2054 REMARK 3 12 1.7035 - 1.6548 0.97 8543 469 0.1698 0.2164 REMARK 3 13 1.6548 - 1.6113 0.95 8299 446 0.1771 0.2147 REMARK 3 14 1.6113 - 1.5720 0.96 8505 521 0.1741 0.1851 REMARK 3 15 1.5720 - 1.5362 0.96 8515 475 0.1803 0.2059 REMARK 3 16 1.5362 - 1.5036 0.96 8488 480 0.1808 0.2267 REMARK 3 17 1.5036 - 1.4735 0.96 8576 412 0.1910 0.2041 REMARK 3 18 1.4735 - 1.4457 0.96 8536 409 0.1950 0.2282 REMARK 3 19 1.4457 - 1.4199 0.96 8488 471 0.2093 0.2302 REMARK 3 20 1.4199 - 1.3958 0.95 8385 508 0.2136 0.2422 REMARK 3 21 1.3958 - 1.3733 0.94 8358 411 0.2228 0.2331 REMARK 3 22 1.3733 - 1.3522 0.92 8187 422 0.2546 0.2738 REMARK 3 23 1.3522 - 1.3323 0.84 7514 388 0.2552 0.2632 REMARK 3 24 1.3323 - 1.3136 0.72 6302 359 0.2603 0.2879 REMARK 3 25 1.3136 - 1.2958 0.63 5674 231 0.2694 0.2643 REMARK 3 26 1.2958 - 1.2790 0.55 4926 216 0.2766 0.2792 REMARK 3 27 1.2790 - 1.2630 0.50 4402 205 0.2887 0.3174 REMARK 3 28 1.2630 - 1.2478 0.45 4001 200 0.3051 0.3442 REMARK 3 29 1.2478 - 1.2333 0.40 3596 157 0.3472 0.3430 REMARK 3 30 1.2333 - 1.2194 0.19 1684 68 0.4661 0.6152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4413 REMARK 3 ANGLE : 0.938 6015 REMARK 3 CHIRALITY : 0.081 647 REMARK 3 PLANARITY : 0.006 779 REMARK 3 DIHEDRAL : 10.447 2552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 237875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.219 REMARK 200 RESOLUTION RANGE LOW (A) : 19.307 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : 3.450 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 20% W/V POLYETHYLENE GLYCOL 3350, PH 5.9, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.54350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.84150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.54350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.84150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1067 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1254 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1260 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1263 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 274 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 -57.68 75.48 REMARK 500 LYS A 44 57.61 -98.82 REMARK 500 ARG A 51 -93.51 -116.31 REMARK 500 ASN A 127 95.63 -160.93 REMARK 500 SER A 219 35.94 -143.66 REMARK 500 TYR A 240 72.94 -118.56 REMARK 500 ALA A 243 -142.51 -132.41 REMARK 500 LYS A 253 53.21 -115.44 REMARK 500 ASP A 322 81.78 -160.00 REMARK 500 ASP A 403 -63.94 -100.56 REMARK 500 PHE A 410 156.20 -49.51 REMARK 500 TYR A 423 -17.93 -141.80 REMARK 500 MET A 438 46.33 -81.69 REMARK 500 GLN A 477 59.57 35.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1263 DISTANCE = 6.48 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 337 OD1 REMARK 620 2 ASN A 339 OD1 81.7 REMARK 620 3 ASP A 341 OD1 89.4 86.0 REMARK 620 4 PHE A 343 O 93.1 174.3 91.6 REMARK 620 5 GLU A 345 OE1 146.3 94.5 123.9 91.1 REMARK 620 6 GLU A 345 OE2 93.0 87.6 172.8 95.0 53.4 REMARK 620 N 1 2 3 4 5 DBREF1 8I5K A 1 529 UNP A0A085SLP2_VIBCL DBREF2 8I5K A A0A085SLP2 28 556 SEQADV 8I5K MET A -6 UNP A0A085SLP INITIATING METHIONINE SEQADV 8I5K HIS A -5 UNP A0A085SLP EXPRESSION TAG SEQADV 8I5K HIS A -4 UNP A0A085SLP EXPRESSION TAG SEQADV 8I5K HIS A -3 UNP A0A085SLP EXPRESSION TAG SEQADV 8I5K HIS A -2 UNP A0A085SLP EXPRESSION TAG SEQADV 8I5K HIS A -1 UNP A0A085SLP EXPRESSION TAG SEQADV 8I5K HIS A 0 UNP A0A085SLP EXPRESSION TAG SEQRES 1 A 536 MET HIS HIS HIS HIS HIS HIS ARG SER GLU LEU THR ILE SEQRES 2 A 536 VAL PRO ASP PHE TYR PRO THR MET VAL ARG ASN PHE ASN SEQRES 3 A 536 PRO TYR LEU ALA THR ASN LEU ARG THR THR THR ASP PHE SEQRES 4 A 536 ILE TYR GLU PRO LEU VAL VAL PHE ASN GLU MET LYS GLY SEQRES 5 A 536 ASN THR PRO VAL PHE ARG LEU ALA GLU SER TYR LYS MET SEQRES 6 A 536 ALA ASP ASP LEU MET SER VAL THR PHE ASP ILE ARG LYS SEQRES 7 A 536 GLY VAL LYS TRP SER ASP GLY GLU ALA PHE THR ALA ASP SEQRES 8 A 536 ASP VAL VAL TYR SER PHE GLY LEU LEU LYS ALA LYS PRO SEQRES 9 A 536 GLU LEU ASP GLN ARG GLY ILE ASN LYS TRP VAL THR SER SEQRES 10 A 536 VAL GLU LYS VAL ASP GLU TYR LYS VAL ARG PHE ARG LEU SEQRES 11 A 536 SER GLU ALA ASN SER ASN VAL PRO TYR GLU ILE SER LEU SEQRES 12 A 536 ILE PRO ILE VAL ALA GLU HIS VAL TRP LYS ASP VAL LYS SEQRES 13 A 536 ASP PRO THR THR PHE THR ASN GLU ASN PRO VAL GLY THR SEQRES 14 A 536 GLY PRO PHE THR VAL ILE ASP THR PHE THR PRO GLN LEU SEQRES 15 A 536 TYR ILE GLN CYS ARG ASN PRO ASN TYR TRP ASP ALA ALA SEQRES 16 A 536 ASN LEU GLU VAL ASP CYS LEU ARG VAL PRO GLN ILE ALA SEQRES 17 A 536 ASN ASN ASP GLN LEU LEU GLY LYS ILE VAL ASN SER GLU SEQRES 18 A 536 LEU ASP TRP THR SER SER PHE VAL PRO ASP ILE ASP ARG SEQRES 19 A 536 THR TYR ALA ALA ALA ASN PRO ASN HIS HIS TYR TRP TYR SEQRES 20 A 536 PRO ALA ALA GLY THR GLN ALA PHE MET VAL ASN PHE LYS SEQRES 21 A 536 ASN PRO ASP PRO ALA LYS LYS GLU ALA LEU ASP ASN VAL SEQRES 22 A 536 ASP PHE ARG ARG ALA PHE SER MET ALA LEU ASP ARG GLN SEQRES 23 A 536 THR ILE ILE ASP ILE ALA PHE TYR GLY SER GLY THR VAL SEQRES 24 A 536 ASN ASP PHE ALA SER GLY LEU GLY TYR ALA PHE GLU ALA SEQRES 25 A 536 TRP SER ASP GLU ALA THR HIS LYS LYS TYR LYS GLY PHE SEQRES 26 A 536 ASN THR TYR ASP VAL GLU GLY SER LYS LYS LEU LEU ALA SEQRES 27 A 536 LYS ALA GLY PHE LYS ASP VAL ASN GLY ASP GLY PHE VAL SEQRES 28 A 536 GLU THR PRO SER GLY LYS SER PHE GLU LEU LEU ILE GLN SEQRES 29 A 536 SER PRO ASN GLY TRP THR ASP PHE ASN ASN THR VAL GLN SEQRES 30 A 536 LEU ALA VAL GLU GLN LEU GLN GLU VAL GLY ILE LYS ALA SEQRES 31 A 536 LYS ALA ARG THR PRO GLU PHE ALA VAL TYR ASN GLN ALA SEQRES 32 A 536 MET LEU GLU GLY THR TYR ASP VAL ALA TYR THR ASN TYR SEQRES 33 A 536 PHE HIS GLY ALA ASP PRO PHE THR TYR TRP ASN SER GLY SEQRES 34 A 536 TYR ASN SER ALA LEU GLN SER GLY ASP GLY MET PRO ARG SEQRES 35 A 536 PHE ALA MET HIS TYR PHE THR ASP LYS LYS LEU ASP GLY SEQRES 36 A 536 LEU LEU ASP SER PHE TYR LYS THR ALA ASP LYS ASN GLU SEQRES 37 A 536 GLN LEU ALA ILE ALA HIS GLY ILE GLN LYS ILE ILE ALA SEQRES 38 A 536 GLU ASN GLN VAL THR ILE PRO VAL MET SER GLY ALA TRP SEQRES 39 A 536 MET TYR GLN TYR ASN THR THR ARG PHE THR GLY TRP TRP SEQRES 40 A 536 SER GLU GLU ASN PRO LYS GLY ARG PRO SER VAL TRP ALA SEQRES 41 A 536 GLY ILE PRO GLU ARG LEU LEU HIS VAL LEU ASP LEU LYS SEQRES 42 A 536 PRO VAL LYS HET NAG B 1 15 HET NAG B 2 14 HET NAG B 3 14 HET MG A 601 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 MG MG 2+ FORMUL 4 HOH *563(H2 O) HELIX 1 AA1 THR A 82 LYS A 96 1 15 HELIX 2 AA2 PRO A 97 ASP A 100 5 4 HELIX 3 AA3 ASN A 129 LEU A 136 1 8 HELIX 4 AA4 ALA A 141 LYS A 146 1 6 HELIX 5 AA5 ASP A 186 LEU A 190 5 5 HELIX 6 AA6 ASN A 202 ASN A 212 1 11 HELIX 7 AA7 ASP A 224 TYR A 229 1 6 HELIX 8 AA8 ALA A 230 ASN A 233 5 4 HELIX 9 AA9 ASP A 256 ASP A 264 1 9 HELIX 10 AB1 ASN A 265 LEU A 276 1 12 HELIX 11 AB2 ASP A 277 PHE A 286 1 10 HELIX 12 AB3 GLY A 300 SER A 307 5 8 HELIX 13 AB4 ASP A 308 GLY A 317 1 10 HELIX 14 AB5 PHE A 318 THR A 320 5 3 HELIX 15 AB6 ASP A 322 ALA A 333 1 12 HELIX 16 AB7 TRP A 362 VAL A 379 1 18 HELIX 17 AB8 GLU A 389 GLU A 399 1 11 HELIX 18 AB9 PRO A 415 ASN A 424 1 10 HELIX 19 AC1 SER A 425 SER A 429 5 5 HELIX 20 AC2 ASP A 443 PHE A 453 1 11 HELIX 21 AC3 ASP A 458 ASN A 476 1 19 HELIX 22 AC4 PRO A 516 LEU A 523 1 8 SHEET 1 AA1 7 PHE A 165 THR A 172 0 SHEET 2 AA1 7 LEU A 175 ARG A 180 -1 O CYS A 179 N VAL A 167 SHEET 3 AA1 7 CYS A 194 PRO A 198 -1 O LEU A 195 N GLN A 178 SHEET 4 AA1 7 GLU A 3 VAL A 7 1 N LEU A 4 O ARG A 196 SHEET 5 AA1 7 TRP A 217 THR A 218 1 N TRP A 217 O THR A 5 SHEET 6 AA1 7 GLN A 490 ASN A 492 -1 O GLN A 490 N THR A 218 SHEET 7 AA1 7 HIS A 236 TYR A 238 -1 N HIS A 237 O TYR A 491 SHEET 1 AA2 2 VAL A 38 ASN A 41 0 SHEET 2 AA2 2 THR A 47 PHE A 50 -1 O THR A 47 N ASN A 41 SHEET 1 AA3 4 ALA A 53 MET A 58 0 SHEET 2 AA3 4 SER A 64 ILE A 69 -1 O ASP A 68 N GLU A 54 SHEET 3 AA3 4 LYS A 118 LEU A 123 -1 O PHE A 121 N VAL A 65 SHEET 4 AA3 4 VAL A 108 ASP A 115 -1 N SER A 110 O ARG A 122 SHEET 1 AA4 6 THR A 291 VAL A 292 0 SHEET 2 AA4 6 ILE A 480 ALA A 486 -1 O SER A 484 N THR A 291 SHEET 3 AA4 6 ALA A 242 VAL A 250 -1 N GLN A 246 O VAL A 482 SHEET 4 AA4 6 VAL A 404 ASN A 408 -1 O ALA A 405 N MET A 249 SHEET 5 AA4 6 LEU A 354 GLN A 357 1 N GLN A 357 O VAL A 404 SHEET 6 AA4 6 ALA A 383 ARG A 386 1 O LYS A 384 N ILE A 356 SHEET 1 AA5 2 PHE A 496 THR A 497 0 SHEET 2 AA5 2 LYS A 526 PRO A 527 -1 O LYS A 526 N THR A 497 SSBOND 1 CYS A 179 CYS A 194 1555 1555 2.06 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 NAG B 3 1555 1555 1.40 LINK OD1 ASP A 337 MG MG A 601 1555 1555 2.16 LINK OD1 ASN A 339 MG MG A 601 1555 1555 2.16 LINK OD1 ASP A 341 MG MG A 601 1555 1555 2.17 LINK O PHE A 343 MG MG A 601 1555 1555 2.15 LINK OE1 GLU A 345 MG MG A 601 1555 1555 2.44 LINK OE2 GLU A 345 MG MG A 601 1555 1555 2.44 CRYST1 135.087 51.683 70.328 90.00 98.83 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007403 0.000000 0.001150 0.00000 SCALE2 0.000000 0.019349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014390 0.00000