HEADER TRANSFERASE 02-FEB-23 8I7S TITLE THE CRYSTAL STRUCTURE OF HUMAN ABL1 KINASE DOMAIN IN COMPLEX WITH TITLE 2 ABL1-B1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 5 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 561 KEYWDS COVALENT KINASE BCR-ABL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHU,Z.ZHANG REVDAT 1 09-OCT-24 8I7S 0 JRNL AUTH J.SUN,L.LOU,C.ZHU,P.CHEN,G.TANG,M.GU,S.XIA,X.DONG,Z.M.ZHANG, JRNL AUTH 2 L.GAO,S.Q.YAO,Q.XIAO JRNL TITL RATIONALLY DESIGNED BCR-ABL KINASE INHIBITORS FOR IMPROVED JRNL TITL 2 LEUKEMIA TREATMENT VIA COVALENT AND PRO-/DUAL-DRUG TARGETING JRNL TITL 3 STRATEGIES. JRNL REF J ADV RES 2024 JRNL REFN ISSN 2090-1224 JRNL PMID 39255927 JRNL DOI 10.1016/J.JARE.2024.09.008 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.343 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 57710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.992 REMARK 3 FREE R VALUE TEST SET COUNT : 2881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7000 - 5.3659 1.00 2821 163 0.2048 0.2477 REMARK 3 2 5.3659 - 4.2606 1.00 2701 138 0.1649 0.1804 REMARK 3 3 4.2606 - 3.7224 1.00 2668 148 0.1523 0.1726 REMARK 3 4 3.7224 - 3.3823 1.00 2656 144 0.1557 0.1970 REMARK 3 5 3.3823 - 3.1399 1.00 2649 129 0.1680 0.2036 REMARK 3 6 3.1399 - 2.9549 1.00 2617 145 0.1831 0.2035 REMARK 3 7 2.9549 - 2.8069 1.00 2646 122 0.1892 0.2390 REMARK 3 8 2.8069 - 2.6848 1.00 2624 132 0.1852 0.2193 REMARK 3 9 2.6848 - 2.5814 1.00 2610 131 0.1875 0.2083 REMARK 3 10 2.5814 - 2.4924 1.00 2645 132 0.1820 0.2070 REMARK 3 11 2.4924 - 2.4144 1.00 2578 144 0.1836 0.2343 REMARK 3 12 2.4144 - 2.3454 1.00 2618 117 0.1844 0.2095 REMARK 3 13 2.3454 - 2.2837 1.00 2583 135 0.1893 0.2366 REMARK 3 14 2.2837 - 2.2280 1.00 2601 143 0.2116 0.2093 REMARK 3 15 2.2280 - 2.1773 1.00 2582 152 0.1974 0.2349 REMARK 3 16 2.1773 - 2.1310 1.00 2602 135 0.1942 0.2056 REMARK 3 17 2.1310 - 2.0884 1.00 2576 128 0.1995 0.2136 REMARK 3 18 2.0884 - 2.0490 1.00 2590 145 0.2218 0.2555 REMARK 3 19 2.0490 - 2.0124 0.99 2555 134 0.2231 0.2657 REMARK 3 20 2.0124 - 1.9783 1.00 2579 144 0.2390 0.3031 REMARK 3 21 1.9783 - 1.9464 0.90 2328 120 0.2506 0.2587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.185 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4398 REMARK 3 ANGLE : 1.090 5968 REMARK 3 CHIRALITY : 0.046 634 REMARK 3 PLANARITY : 0.005 747 REMARK 3 DIHEDRAL : 15.775 1598 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3910 20.2554 2.4393 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.2271 REMARK 3 T33: 0.1569 T12: 0.0521 REMARK 3 T13: 0.0334 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.2930 L22: 3.0297 REMARK 3 L33: 4.5393 L12: -2.4418 REMARK 3 L13: 3.5646 L23: -0.4268 REMARK 3 S TENSOR REMARK 3 S11: -0.1084 S12: -0.2306 S13: 0.3882 REMARK 3 S21: 0.2009 S22: -0.0536 S23: 0.0396 REMARK 3 S31: -0.2505 S32: -0.2081 S33: 0.1163 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9325 8.6461 -8.8627 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1457 REMARK 3 T33: 0.0953 T12: 0.0452 REMARK 3 T13: -0.0010 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 2.0906 L22: 1.6344 REMARK 3 L33: 1.7539 L12: -0.8066 REMARK 3 L13: -0.4389 L23: 0.5262 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: -0.1054 S13: -0.0131 REMARK 3 S21: 0.1017 S22: 0.0702 S23: 0.1089 REMARK 3 S31: -0.0767 S32: -0.1147 S33: 0.0071 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 380 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2638 21.0606 -23.0460 REMARK 3 T TENSOR REMARK 3 T11: 0.2632 T22: 0.1947 REMARK 3 T33: 0.2024 T12: 0.1166 REMARK 3 T13: 0.0165 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.6735 L22: 1.5774 REMARK 3 L33: 3.1185 L12: -0.6994 REMARK 3 L13: -1.7260 L23: -0.2528 REMARK 3 S TENSOR REMARK 3 S11: -0.0888 S12: 0.0687 S13: 0.2509 REMARK 3 S21: 0.1047 S22: 0.0287 S23: 0.1885 REMARK 3 S31: -0.1040 S32: -0.2891 S33: -0.0527 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 418 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7996 6.2072 -27.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.1440 REMARK 3 T33: 0.1004 T12: 0.0648 REMARK 3 T13: 0.0096 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 2.7013 L22: 1.9253 REMARK 3 L33: 3.3776 L12: 0.2797 REMARK 3 L13: -0.1764 L23: -0.3457 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.1782 S13: -0.2415 REMARK 3 S21: -0.2215 S22: -0.0435 S23: -0.0808 REMARK 3 S31: 0.2101 S32: -0.0751 S33: 0.0143 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9778 49.2078 -11.8726 REMARK 3 T TENSOR REMARK 3 T11: 0.3166 T22: 0.2867 REMARK 3 T33: 0.4565 T12: -0.0003 REMARK 3 T13: -0.0364 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.4384 L22: 2.9161 REMARK 3 L33: 3.5646 L12: 0.6482 REMARK 3 L13: 0.4287 L23: 1.2808 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.0711 S13: 0.3396 REMARK 3 S21: -0.1612 S22: 0.1604 S23: -0.7088 REMARK 3 S31: -0.5706 S32: 0.6420 S33: -0.1131 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 380 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.1269 47.3482 -10.6252 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.1961 REMARK 3 T33: 0.1975 T12: 0.1069 REMARK 3 T13: -0.0827 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 2.4510 L22: 0.8401 REMARK 3 L33: 1.7280 L12: -0.2198 REMARK 3 L13: 0.3206 L23: -0.1583 REMARK 3 S TENSOR REMARK 3 S11: -0.1337 S12: -0.1374 S13: 0.3027 REMARK 3 S21: 0.0419 S22: 0.0134 S23: -0.0810 REMARK 3 S31: -0.1403 S32: -0.0296 S33: 0.0933 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 06-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57806 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 40.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M (NH4)2SO4, 0.1M HEPES (PH 7.0), REMARK 280 4% V/V 1,3-PROPANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.23050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.31750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.23050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.31750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 892 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 229 REMARK 465 PRO A 230 REMARK 465 ASN A 231 REMARK 465 GLY A 249 REMARK 465 GLY A 250 REMARK 465 GLN A 252 REMARK 465 TYR A 253 REMARK 465 GLU A 275 REMARK 465 ASP A 276 REMARK 465 THR A 277 REMARK 465 SER B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 231 REMARK 465 GLU B 275 REMARK 465 ASP B 276 REMARK 465 THR B 277 REMARK 465 MET B 278 REMARK 465 GLU B 279 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 TYR B 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 233 CG OD1 OD2 REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 HIS B 246 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 GLU B 462 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS A 274 O HOH A 701 1.84 REMARK 500 O HOH A 953 O HOH A 968 1.94 REMARK 500 O HOH A 708 O HOH A 874 1.97 REMARK 500 O HOH A 825 O HOH A 947 2.05 REMARK 500 O HOH B 854 O HOH B 876 2.05 REMARK 500 O ASP A 233 O HOH A 702 2.06 REMARK 500 O HOH B 844 O HOH B 846 2.09 REMARK 500 O HOH B 758 O HOH B 800 2.12 REMARK 500 OG1 THR A 240 O HOH A 703 2.16 REMARK 500 O HOH A 799 O HOH A 890 2.16 REMARK 500 O HOH A 824 O HOH A 915 2.16 REMARK 500 O HOH A 935 O HOH A 973 2.18 REMARK 500 O HOH B 788 O HOH B 868 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 921 O HOH B 885 3444 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 362 -2.89 73.92 REMARK 500 ASP A 363 52.85 -143.83 REMARK 500 LEU A 387 116.40 -162.44 REMARK 500 GLU B 255 31.32 -75.45 REMARK 500 ARG B 362 -9.90 75.57 REMARK 500 ASP B 363 55.43 -144.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 986 DISTANCE = 5.99 ANGSTROMS DBREF 8I7S A 229 500 UNP P00519 ABL1_HUMAN 229 500 DBREF 8I7S B 229 500 UNP P00519 ABL1_HUMAN 229 500 SEQRES 1 A 272 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 A 272 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 A 272 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 A 272 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 A 272 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 A 272 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 A 272 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 A 272 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 A 272 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 A 272 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 A 272 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 A 272 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 A 272 SER ARG LEU MET THR GLY ASP THR PTR THR ALA HIS ALA SEQRES 14 A 272 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 A 272 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 A 272 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 A 272 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 A 272 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 A 272 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 A 272 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 A 272 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER SEQRES 1 B 272 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 B 272 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 B 272 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 B 272 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 B 272 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 B 272 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 B 272 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 B 272 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 B 272 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 B 272 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 B 272 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 B 272 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 B 272 SER ARG LEU MET THR GLY ASP THR PTR THR ALA HIS ALA SEQRES 14 B 272 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 B 272 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 B 272 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 B 272 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 B 272 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 B 272 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 B 272 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 B 272 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER MODRES 8I7S PTR A 393 TYR MODIFIED RESIDUE MODRES 8I7S PTR B 393 TYR MODIFIED RESIDUE HET PTR A 393 16 HET PTR B 393 16 HET 6CI A 601 29 HET 6CI B 601 29 HETNAM PTR O-PHOSPHOTYROSINE HETNAM 6CI 5-[3-(2-METHOXY-5-OXIDANYL-PHENYL)-1H-PYRROLO[2,3- HETNAM 2 6CI B]PYRIDIN-5-YL]-N,N-DIMETHYL-PYRIDINE-3-CARBOXAMIDE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 6CI 2(C22 H20 N4 O3) FORMUL 5 HOH *476(H2 O) HELIX 1 AA1 GLU A 238 THR A 240 5 3 HELIX 2 AA2 LYS A 263 SER A 265 5 3 HELIX 3 AA3 GLU A 279 LYS A 291 1 13 HELIX 4 AA4 ASN A 322 CYS A 330 1 9 HELIX 5 AA5 ASN A 336 LYS A 357 1 22 HELIX 6 AA6 ALA A 365 ARG A 367 5 3 HELIX 7 AA7 GLU A 373 HIS A 375 5 3 HELIX 8 AA8 PRO A 402 THR A 406 5 5 HELIX 9 AA9 ALA A 407 ASN A 414 1 8 HELIX 10 AB1 SER A 417 THR A 434 1 18 HELIX 11 AB2 ASP A 444 SER A 446 5 3 HELIX 12 AB3 GLN A 447 LYS A 454 1 8 HELIX 13 AB4 PRO A 465 TRP A 476 1 12 HELIX 14 AB5 ASN A 479 ARG A 483 5 5 HELIX 15 AB6 SER A 485 SER A 500 1 16 HELIX 16 AB7 GLU B 238 THR B 240 5 3 HELIX 17 AB8 GLU B 281 ILE B 293 1 13 HELIX 18 AB9 ASN B 322 CYS B 330 1 9 HELIX 19 AC1 ASN B 336 LYS B 357 1 22 HELIX 20 AC2 ALA B 365 ARG B 367 5 3 HELIX 21 AC3 GLU B 373 HIS B 375 5 3 HELIX 22 AC4 PRO B 402 THR B 406 5 5 HELIX 23 AC5 ALA B 407 ASN B 414 1 8 HELIX 24 AC6 SER B 417 THR B 434 1 18 HELIX 25 AC7 ASP B 444 SER B 446 5 3 HELIX 26 AC8 GLN B 447 LYS B 454 1 8 HELIX 27 AC9 PRO B 465 TRP B 476 1 12 HELIX 28 AD1 ASN B 479 ARG B 483 5 5 HELIX 29 AD2 SER B 485 SER B 500 1 16 SHEET 1 AA1 5 ILE A 242 LYS A 247 0 SHEET 2 AA1 5 VAL A 256 TRP A 261 -1 O GLU A 258 N HIS A 246 SHEET 3 AA1 5 LEU A 266 THR A 272 -1 O VAL A 268 N GLY A 259 SHEET 4 AA1 5 TYR A 312 GLU A 316 -1 O ILE A 313 N LYS A 271 SHEET 5 AA1 5 LEU A 301 CYS A 305 -1 N LEU A 302 O ILE A 314 SHEET 1 AA2 2 PHE A 359 ILE A 360 0 SHEET 2 AA2 2 SER A 385 ARG A 386 -1 O SER A 385 N ILE A 360 SHEET 1 AA3 2 CYS A 369 VAL A 371 0 SHEET 2 AA3 2 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370 SHEET 1 AA4 2 PTR A 393 THR A 394 0 SHEET 2 AA4 2 LYS A 415 PHE A 416 -1 O PHE A 416 N PTR A 393 SHEET 1 AA5 5 ILE B 242 LYS B 247 0 SHEET 2 AA5 5 VAL B 256 TRP B 261 -1 O GLU B 258 N HIS B 246 SHEET 3 AA5 5 LEU B 266 LEU B 273 -1 O LEU B 266 N TRP B 261 SHEET 4 AA5 5 PHE B 311 GLU B 316 -1 O ILE B 313 N LYS B 271 SHEET 5 AA5 5 LEU B 301 CYS B 305 -1 N GLY B 303 O ILE B 314 SHEET 1 AA6 2 PHE B 359 ILE B 360 0 SHEET 2 AA6 2 SER B 385 ARG B 386 -1 O SER B 385 N ILE B 360 SHEET 1 AA7 2 CYS B 369 VAL B 371 0 SHEET 2 AA7 2 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370 SHEET 1 AA8 2 PTR B 393 THR B 394 0 SHEET 2 AA8 2 LYS B 415 PHE B 416 -1 O PHE B 416 N PTR B 393 LINK C THR A 392 N PTR A 393 1555 1555 1.33 LINK C PTR A 393 N THR A 394 1555 1555 1.33 LINK C THR B 392 N PTR B 393 1555 1555 1.33 LINK C PTR B 393 N THR B 394 1555 1555 1.33 CISPEP 1 PRO A 309 PRO A 310 0 0.25 CISPEP 2 PRO B 309 PRO B 310 0 0.92 CRYST1 104.461 132.635 56.197 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017794 0.00000 CONECT 1223 1228 CONECT 1228 1223 1229 CONECT 1229 1228 1230 1232 CONECT 1230 1229 1231 1244 CONECT 1231 1230 CONECT 1232 1229 1233 CONECT 1233 1232 1234 1235 CONECT 1234 1233 1236 CONECT 1235 1233 1237 CONECT 1236 1234 1238 CONECT 1237 1235 1238 CONECT 1238 1236 1237 1239 CONECT 1239 1238 1240 CONECT 1240 1239 1241 1242 1243 CONECT 1241 1240 CONECT 1242 1240 CONECT 1243 1240 CONECT 1244 1230 CONECT 3338 3343 CONECT 3343 3338 3344 CONECT 3344 3343 3345 3347 CONECT 3345 3344 3346 3359 CONECT 3346 3345 CONECT 3347 3344 3348 CONECT 3348 3347 3349 3350 CONECT 3349 3348 3351 CONECT 3350 3348 3352 CONECT 3351 3349 3353 CONECT 3352 3350 3353 CONECT 3353 3351 3352 3354 CONECT 3354 3353 3355 CONECT 3355 3354 3356 3357 3358 CONECT 3356 3355 CONECT 3357 3355 CONECT 3358 3355 CONECT 3359 3345 CONECT 4231 4246 4247 CONECT 4232 4238 4251 CONECT 4233 4234 4247 4250 CONECT 4234 4233 4245 CONECT 4235 4245 4248 4249 CONECT 4236 4248 CONECT 4237 4248 CONECT 4238 4232 4250 CONECT 4239 4250 4252 CONECT 4240 4252 4254 4255 CONECT 4241 4255 4256 CONECT 4242 4243 4257 CONECT 4243 4242 4255 4259 CONECT 4244 4259 CONECT 4245 4234 4235 4246 CONECT 4246 4231 4245 CONECT 4247 4231 4233 CONECT 4248 4235 4236 4237 CONECT 4249 4235 CONECT 4250 4233 4238 4239 CONECT 4251 4232 4252 4253 CONECT 4252 4239 4240 4251 CONECT 4253 4251 4254 CONECT 4254 4240 4253 CONECT 4255 4240 4241 4243 CONECT 4256 4241 4257 4258 CONECT 4257 4242 4256 CONECT 4258 4256 CONECT 4259 4243 4244 CONECT 4260 4275 4276 CONECT 4261 4267 4280 CONECT 4262 4263 4276 4279 CONECT 4263 4262 4274 CONECT 4264 4274 4277 4278 CONECT 4265 4277 CONECT 4266 4277 CONECT 4267 4261 4279 CONECT 4268 4279 4281 CONECT 4269 4281 4283 4284 CONECT 4270 4284 4285 CONECT 4271 4272 4286 CONECT 4272 4271 4284 4288 CONECT 4273 4288 CONECT 4274 4263 4264 4275 CONECT 4275 4260 4274 CONECT 4276 4260 4262 CONECT 4277 4264 4265 4266 CONECT 4278 4264 CONECT 4279 4262 4267 4268 CONECT 4280 4261 4281 4282 CONECT 4281 4268 4269 4280 CONECT 4282 4280 4283 CONECT 4283 4269 4282 CONECT 4284 4269 4270 4272 CONECT 4285 4270 4286 4287 CONECT 4286 4271 4285 CONECT 4287 4285 CONECT 4288 4272 4273 MASTER 444 0 4 29 22 0 0 6 4762 2 94 42 END