HEADER TRANSFERASE 02-FEB-23 8I7Z TITLE THE CRYSTAL STRUCTURE OF HUMAN ABL1 KINASE DOMAIN IN COMPLEX WITH TITLE 2 ABL1-B5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 5 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 561 KEYWDS COVALENT KINASE BCR-ABL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHU,Z.ZHANG REVDAT 1 23-OCT-24 8I7Z 0 JRNL AUTH J.SUN,L.LOU,C.ZHU,P.CHEN,G.TANG,M.GU,S.XIA,X.DONG,Z.M.ZHANG, JRNL AUTH 2 L.GAO,S.Q.YAO,Q.XIAO JRNL TITL RATIONALLY DESIGNED BCR-ABL KINASE INHIBITORS FOR IMPROVED JRNL TITL 2 LEUKEMIA TREATMENT VIA COVALENT AND PRO-/DUAL-DRUG TARGETING JRNL TITL 3 STRATEGIES. JRNL REF J ADV RES 2024 JRNL REFN ISSN 2090-1224 JRNL PMID 39255927 JRNL DOI 10.1016/J.JARE.2024.09.008 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.289 REMARK 3 FREE R VALUE TEST SET COUNT : 1252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.6000 - 4.6900 0.99 4295 146 0.1651 0.1919 REMARK 3 2 4.6900 - 3.7227 1.00 4138 142 0.1429 0.1929 REMARK 3 3 3.7227 - 3.2521 1.00 4116 139 0.1629 0.1737 REMARK 3 4 3.2521 - 2.9548 1.00 4067 139 0.1873 0.2423 REMARK 3 5 2.9548 - 2.7430 1.00 4062 138 0.2016 0.2532 REMARK 3 6 2.7430 - 2.5813 1.00 4043 137 0.2026 0.2208 REMARK 3 7 2.5813 - 2.4520 1.00 4039 137 0.2040 0.2531 REMARK 3 8 2.4520 - 2.3452 1.00 4042 138 0.2082 0.2681 REMARK 3 9 2.3452 - 2.2550 1.00 4010 136 0.2121 0.2600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.171 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.508 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4352 REMARK 3 ANGLE : 0.674 5918 REMARK 3 CHIRALITY : 0.026 635 REMARK 3 PLANARITY : 0.002 741 REMARK 3 DIHEDRAL : 15.382 1561 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7210 20.1422 2.7501 REMARK 3 T TENSOR REMARK 3 T11: 0.2490 T22: 0.2520 REMARK 3 T33: 0.1875 T12: 0.0631 REMARK 3 T13: 0.0562 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 4.6762 L22: 3.0429 REMARK 3 L33: 4.7485 L12: -1.8486 REMARK 3 L13: 2.6991 L23: 0.0997 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: -0.3848 S13: 0.4029 REMARK 3 S21: 0.3092 S22: 0.0279 S23: 0.1597 REMARK 3 S31: -0.4124 S32: -0.2729 S33: 0.0548 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8452 8.4671 -9.0631 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1540 REMARK 3 T33: 0.1147 T12: 0.0464 REMARK 3 T13: 0.0165 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 2.9037 L22: 1.9708 REMARK 3 L33: 2.4459 L12: -0.7606 REMARK 3 L13: -0.4906 L23: 0.8836 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.0942 S13: -0.0294 REMARK 3 S21: 0.1204 S22: 0.0031 S23: 0.1581 REMARK 3 S31: -0.1093 S32: -0.1642 S33: 0.0439 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 380 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5960 20.9763 -23.2863 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.2283 REMARK 3 T33: 0.2334 T12: 0.1099 REMARK 3 T13: -0.0032 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 5.7576 L22: 1.8319 REMARK 3 L33: 4.8854 L12: -0.8783 REMARK 3 L13: -2.8134 L23: -0.1710 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0590 S13: 0.4766 REMARK 3 S21: 0.1389 S22: 0.0311 S23: 0.1466 REMARK 3 S31: -0.1933 S32: -0.3770 S33: -0.0022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 418 THROUGH 499 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9292 6.3608 -27.8487 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.1706 REMARK 3 T33: 0.1116 T12: 0.0595 REMARK 3 T13: 0.0087 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 3.7645 L22: 2.7051 REMARK 3 L33: 4.3587 L12: 0.4666 REMARK 3 L13: -0.8271 L23: -0.7604 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.2180 S13: -0.2564 REMARK 3 S21: -0.2466 S22: -0.1058 S23: -0.0676 REMARK 3 S31: 0.2209 S32: -0.0984 S33: 0.0772 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2833 56.8868 -11.2382 REMARK 3 T TENSOR REMARK 3 T11: 0.4595 T22: 0.7086 REMARK 3 T33: 0.8357 T12: -0.1466 REMARK 3 T13: 0.0280 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 1.4636 L22: 1.7836 REMARK 3 L33: 3.3333 L12: 0.9848 REMARK 3 L13: -1.1111 L23: 0.6459 REMARK 3 S TENSOR REMARK 3 S11: 0.1163 S12: 0.2432 S13: 0.0722 REMARK 3 S21: -0.2977 S22: 0.2394 S23: -0.9259 REMARK 3 S31: -0.7875 S32: 1.1672 S33: -0.2255 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2450 44.9627 -12.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.2139 T22: 0.2554 REMARK 3 T33: 0.3978 T12: 0.0638 REMARK 3 T13: -0.0549 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.0372 L22: 3.1947 REMARK 3 L33: 3.9392 L12: 0.8883 REMARK 3 L13: 0.4473 L23: 0.8860 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.0439 S13: 0.2957 REMARK 3 S21: -0.0277 S22: 0.0065 S23: -0.6000 REMARK 3 S31: -0.2875 S32: 0.4746 S33: -0.0477 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 380 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8510 58.5490 -1.7502 REMARK 3 T TENSOR REMARK 3 T11: 0.4676 T22: 0.3490 REMARK 3 T33: 0.4353 T12: -0.0146 REMARK 3 T13: 0.0080 T23: -0.1061 REMARK 3 L TENSOR REMARK 3 L11: 8.9472 L22: 9.3371 REMARK 3 L33: 2.1573 L12: -5.0806 REMARK 3 L13: -2.1644 L23: 3.3134 REMARK 3 S TENSOR REMARK 3 S11: 0.4027 S12: 0.0576 S13: 0.7810 REMARK 3 S21: -0.5023 S22: -0.2725 S23: -0.5400 REMARK 3 S31: -0.7463 S32: 0.5046 S33: -0.1561 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 401 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.9560 45.4437 -12.3472 REMARK 3 T TENSOR REMARK 3 T11: 0.2352 T22: 0.1848 REMARK 3 T33: 0.1622 T12: 0.0606 REMARK 3 T13: -0.0722 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 4.1067 L22: 3.0817 REMARK 3 L33: 2.1927 L12: -1.6543 REMARK 3 L13: 0.1992 L23: -0.7273 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: -0.0672 S13: 0.1379 REMARK 3 S21: 0.0747 S22: 0.0275 S23: -0.0587 REMARK 3 S31: -0.1029 S32: -0.0885 S33: 0.0516 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 07-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 66.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M (NH4)2 SO4, 0.1M HEPES (PH 7.0) REMARK 280 AND 4% V/V 1,3-PROPANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.30150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.68500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.30150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.68500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 229 REMARK 465 PRO A 230 REMARK 465 ASN A 231 REMARK 465 GLY A 249 REMARK 465 GLY A 250 REMARK 465 GLY A 251 REMARK 465 GLN A 252 REMARK 465 TYR A 253 REMARK 465 GLY A 254 REMARK 465 LYS A 274 REMARK 465 GLU A 275 REMARK 465 ASP A 276 REMARK 465 THR A 277 REMARK 465 SER A 500 REMARK 465 SER B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 231 REMARK 465 GLY B 249 REMARK 465 LYS B 274 REMARK 465 GLU B 275 REMARK 465 ASP B 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 271 NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 TYR B 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 233 CG OD1 OD2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 HIS B 246 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 GLU B 281 CG CD OE1 OE2 REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 ASP B 444 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 271 N BAL A 602 1.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 362 -1.93 75.46 REMARK 500 ASP A 363 46.12 -148.06 REMARK 500 LEU A 387 119.67 -165.08 REMARK 500 LYS B 245 -114.92 -144.75 REMARK 500 SER B 265 27.84 36.16 REMARK 500 MET B 278 -150.97 -80.76 REMARK 500 GLU B 279 2.58 58.26 REMARK 500 ARG B 307 -85.68 -98.48 REMARK 500 PRO B 310 99.85 -64.44 REMARK 500 ARG B 362 -16.77 69.06 REMARK 500 ASP B 363 56.80 -146.00 REMARK 500 PRO B 402 92.18 -66.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 869 DISTANCE = 6.36 ANGSTROMS DBREF 8I7Z A 229 500 UNP P00519 ABL1_HUMAN 229 500 DBREF 8I7Z B 229 500 UNP P00519 ABL1_HUMAN 229 500 SEQRES 1 A 272 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 A 272 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 A 272 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 A 272 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 A 272 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 A 272 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 A 272 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 A 272 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 A 272 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 A 272 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 A 272 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 A 272 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 A 272 SER ARG LEU MET THR GLY ASP THR PTR THR ALA HIS ALA SEQRES 14 A 272 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 A 272 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 A 272 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 A 272 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 A 272 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 A 272 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 A 272 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 A 272 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER SEQRES 1 B 272 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 B 272 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 B 272 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 B 272 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 B 272 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 B 272 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 B 272 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 B 272 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 B 272 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 B 272 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 B 272 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 B 272 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 B 272 SER ARG LEU MET THR GLY ASP THR PTR THR ALA HIS ALA SEQRES 14 B 272 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 B 272 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 B 272 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 B 272 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 B 272 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 B 272 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 B 272 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 B 272 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER MODRES 8I7Z PTR A 393 TYR MODIFIED RESIDUE MODRES 8I7Z PTR B 393 TYR MODIFIED RESIDUE HET PTR A 393 16 HET PTR B 393 16 HET 6CI A 601 29 HET BAL A 602 6 HET 6CI B 601 29 HETNAM PTR O-PHOSPHOTYROSINE HETNAM 6CI 5-[3-(2-METHOXY-5-OXIDANYL-PHENYL)-1H-PYRROLO[2,3- HETNAM 2 6CI B]PYRIDIN-5-YL]-N,N-DIMETHYL-PYRIDINE-3-CARBOXAMIDE HETNAM BAL BETA-ALANINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 6CI 2(C22 H20 N4 O3) FORMUL 4 BAL C3 H7 N O2 FORMUL 6 HOH *273(H2 O) HELIX 1 AA1 GLU A 238 THR A 240 5 3 HELIX 2 AA2 LYS A 263 SER A 265 5 3 HELIX 3 AA3 GLU A 279 LYS A 291 1 13 HELIX 4 AA4 ASN A 322 CYS A 330 1 9 HELIX 5 AA5 ASN A 336 LYS A 357 1 22 HELIX 6 AA6 ALA A 365 ARG A 367 5 3 HELIX 7 AA7 GLU A 373 HIS A 375 5 3 HELIX 8 AA8 PRO A 402 THR A 406 5 5 HELIX 9 AA9 ALA A 407 ASN A 414 1 8 HELIX 10 AB1 SER A 417 THR A 434 1 18 HELIX 11 AB2 ASP A 444 SER A 446 5 3 HELIX 12 AB3 GLN A 447 LYS A 454 1 8 HELIX 13 AB4 PRO A 465 TRP A 476 1 12 HELIX 14 AB5 ASN A 479 ARG A 483 5 5 HELIX 15 AB6 SER A 485 GLN A 498 1 14 HELIX 16 AB7 TYR B 232 GLU B 236 5 5 HELIX 17 AB8 GLU B 279 ILE B 293 1 15 HELIX 18 AB9 ASN B 322 CYS B 330 1 9 HELIX 19 AC1 ASN B 336 LYS B 357 1 22 HELIX 20 AC2 ALA B 365 ARG B 367 5 3 HELIX 21 AC3 GLU B 373 HIS B 375 5 3 HELIX 22 AC4 PRO B 402 THR B 406 5 5 HELIX 23 AC5 ALA B 407 ASN B 414 1 8 HELIX 24 AC6 SER B 417 THR B 434 1 18 HELIX 25 AC7 ASP B 444 SER B 446 5 3 HELIX 26 AC8 GLN B 447 LYS B 454 1 8 HELIX 27 AC9 PRO B 465 TRP B 476 1 12 HELIX 28 AD1 ASN B 479 ARG B 483 5 5 HELIX 29 AD2 SER B 485 SER B 500 1 16 SHEET 1 AA1 5 ILE A 242 LYS A 247 0 SHEET 2 AA1 5 VAL A 256 TRP A 261 -1 O GLU A 258 N HIS A 246 SHEET 3 AA1 5 LEU A 266 THR A 272 -1 O VAL A 268 N GLY A 259 SHEET 4 AA1 5 TYR A 312 GLU A 316 -1 O THR A 315 N ALA A 269 SHEET 5 AA1 5 LEU A 301 CYS A 305 -1 N LEU A 302 O ILE A 314 SHEET 1 AA2 2 PHE A 359 ILE A 360 0 SHEET 2 AA2 2 SER A 385 ARG A 386 -1 O SER A 385 N ILE A 360 SHEET 1 AA3 2 CYS A 369 VAL A 371 0 SHEET 2 AA3 2 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370 SHEET 1 AA4 2 PTR A 393 THR A 394 0 SHEET 2 AA4 2 LYS A 415 PHE A 416 -1 O PHE A 416 N PTR A 393 SHEET 1 AA5 5 ILE B 242 LYS B 247 0 SHEET 2 AA5 5 VAL B 256 TRP B 261 -1 O GLU B 258 N HIS B 246 SHEET 3 AA5 5 LEU B 266 LEU B 273 -1 O VAL B 268 N GLY B 259 SHEET 4 AA5 5 PHE B 311 GLU B 316 -1 O THR B 315 N ALA B 269 SHEET 5 AA5 5 LEU B 301 CYS B 305 -1 N GLY B 303 O ILE B 314 SHEET 1 AA6 2 PHE B 359 ILE B 360 0 SHEET 2 AA6 2 SER B 385 ARG B 386 -1 O SER B 385 N ILE B 360 SHEET 1 AA7 2 CYS B 369 VAL B 371 0 SHEET 2 AA7 2 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370 SHEET 1 AA8 2 PTR B 393 THR B 394 0 SHEET 2 AA8 2 LYS B 415 PHE B 416 -1 O PHE B 416 N PTR B 393 LINK C THR A 392 N PTR A 393 1555 1555 1.33 LINK C PTR A 393 N THR A 394 1555 1555 1.33 LINK C THR B 392 N PTR B 393 1555 1555 1.33 LINK C PTR B 393 N THR B 394 1555 1555 1.33 CISPEP 1 PRO A 309 PRO A 310 0 0.32 CRYST1 104.603 133.370 56.554 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017682 0.00000 CONECT 1191 1196 CONECT 1196 1191 1197 CONECT 1197 1196 1198 1200 CONECT 1198 1197 1199 1212 CONECT 1199 1198 CONECT 1200 1197 1201 CONECT 1201 1200 1202 1203 CONECT 1202 1201 1204 CONECT 1203 1201 1205 CONECT 1204 1202 1206 CONECT 1205 1203 1206 CONECT 1206 1204 1205 1207 CONECT 1207 1206 1208 CONECT 1208 1207 1209 1210 1211 CONECT 1209 1208 CONECT 1210 1208 CONECT 1211 1208 CONECT 1212 1198 CONECT 3285 3290 CONECT 3290 3285 3291 CONECT 3291 3290 3292 3294 CONECT 3292 3291 3293 3306 CONECT 3293 3292 CONECT 3294 3291 3295 CONECT 3295 3294 3296 3297 CONECT 3296 3295 3298 CONECT 3297 3295 3299 CONECT 3298 3296 3300 CONECT 3299 3297 3300 CONECT 3300 3298 3299 3301 CONECT 3301 3300 3302 CONECT 3302 3301 3303 3304 3305 CONECT 3303 3302 CONECT 3304 3302 CONECT 3305 3302 CONECT 3306 3292 CONECT 4179 4194 4195 CONECT 4180 4186 4199 CONECT 4181 4182 4195 4198 CONECT 4182 4181 4193 CONECT 4183 4193 4196 4197 CONECT 4184 4196 CONECT 4185 4196 CONECT 4186 4180 4198 CONECT 4187 4198 4200 CONECT 4188 4200 4202 4203 CONECT 4189 4203 4204 CONECT 4190 4191 4205 CONECT 4191 4190 4203 4207 CONECT 4192 4207 CONECT 4193 4182 4183 4194 CONECT 4194 4179 4193 CONECT 4195 4179 4181 CONECT 4196 4183 4184 4185 CONECT 4197 4183 CONECT 4198 4181 4186 4187 CONECT 4199 4180 4200 4201 CONECT 4200 4187 4188 4199 CONECT 4201 4199 4202 CONECT 4202 4188 4201 CONECT 4203 4188 4189 4191 CONECT 4204 4189 4205 4206 CONECT 4205 4190 4204 CONECT 4206 4204 CONECT 4207 4191 4192 CONECT 4208 4209 CONECT 4209 4208 4210 CONECT 4210 4209 4211 CONECT 4211 4210 4212 4213 CONECT 4212 4211 CONECT 4213 4211 CONECT 4214 4229 4230 CONECT 4215 4221 4234 CONECT 4216 4217 4230 4233 CONECT 4217 4216 4228 CONECT 4218 4228 4231 4232 CONECT 4219 4231 CONECT 4220 4231 CONECT 4221 4215 4233 CONECT 4222 4233 4235 CONECT 4223 4235 4237 4238 CONECT 4224 4238 4239 CONECT 4225 4226 4240 CONECT 4226 4225 4238 4242 CONECT 4227 4242 CONECT 4228 4217 4218 4229 CONECT 4229 4214 4228 CONECT 4230 4214 4216 CONECT 4231 4218 4219 4220 CONECT 4232 4218 CONECT 4233 4216 4221 4222 CONECT 4234 4215 4235 4236 CONECT 4235 4222 4223 4234 CONECT 4236 4234 4237 CONECT 4237 4223 4236 CONECT 4238 4223 4224 4226 CONECT 4239 4224 4240 4241 CONECT 4240 4225 4239 CONECT 4241 4239 CONECT 4242 4226 4227 MASTER 436 0 5 29 22 0 0 6 4513 2 100 42 END