HEADER RNA BINDING PROTEIN/RNA/DNA 10-FEB-23 8IBW TITLE STRUCTURE OF R2 WITH 3'UTR AND DNA IN BINDING STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (60-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (60-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REVERSE TRANSCRIPTASE-LIKE PROTEIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: 3'UTR; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: DOMESTIC SILKWORM; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 9 ORGANISM_COMMON: DOMESTIC SILKWORM; SOURCE 10 ORGANISM_TAXID: 7091; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 15 ORGANISM_COMMON: DOMESTIC SILKWORM; SOURCE 16 ORGANISM_TAXID: 7091; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 21 ORGANISM_COMMON: DOMESTIC SILKWORM; SOURCE 22 ORGANISM_TAXID: 7091; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS R2 COMPLEX, RNA BINDING PROTEIN/RNA/DNA, RNA BINDING PROTEIN-RNA-DNA KEYWDS 2 COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR P.DENG,S.TAN,J.WANG,J.J.LIU REVDAT 1 20-SEP-23 8IBW 0 JRNL AUTH P.DENG,S.Q.TAN,Q.Y.YANG,L.FU,Y.WU,H.Z.ZHU,L.SUN,Z.BAO,Y.LIN, JRNL AUTH 2 Q.C.ZHANG,H.WANG,J.WANG,J.G.LIU JRNL TITL STRUCTURAL RNA COMPONENTS SUPERVISE THE SEQUENTIAL DNA JRNL TITL 2 CLEAVAGE IN R2 RETROTRANSPOSON. JRNL REF CELL V. 186 2865 2023 JRNL REFN ISSN 1097-4172 JRNL PMID 37301196 JRNL DOI 10.1016/J.CELL.2023.05.032 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, UCSF CHIMERA, PHENIX, REMARK 3 RELION, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : BACKBONE TRACE REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 89089 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8IBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 14-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035375. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : R2 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 0.01 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 64000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT A 44 REMARK 465 DA A 45 REMARK 465 DG A 46 REMARK 465 DC A 47 REMARK 465 DC A 48 REMARK 465 DA A 49 REMARK 465 DA A 50 REMARK 465 DA A 51 REMARK 465 DT A 52 REMARK 465 DG A 53 REMARK 465 DC A 54 REMARK 465 DC A 55 REMARK 465 DT A 56 REMARK 465 DC A 57 REMARK 465 DG A 58 REMARK 465 DT A 59 REMARK 465 DC A 60 REMARK 465 DG B 1 REMARK 465 DA B 2 REMARK 465 DC B 3 REMARK 465 DG B 4 REMARK 465 DA B 5 REMARK 465 DG B 6 REMARK 465 DG B 7 REMARK 465 DC B 8 REMARK 465 DA B 9 REMARK 465 DT B 10 REMARK 465 DT B 11 REMARK 465 DT B 12 REMARK 465 DG B 13 REMARK 465 DG B 14 REMARK 465 DC B 15 REMARK 465 DT B 16 REMARK 465 DA B 17 REMARK 465 MET C 1 REMARK 465 MET C 2 REMARK 465 ALA C 3 REMARK 465 SER C 4 REMARK 465 THR C 5 REMARK 465 ALA C 6 REMARK 465 LEU C 7 REMARK 465 SER C 8 REMARK 465 LEU C 9 REMARK 465 MET C 10 REMARK 465 GLY C 11 REMARK 465 ARG C 12 REMARK 465 CYS C 13 REMARK 465 ASN C 14 REMARK 465 PRO C 15 REMARK 465 ASP C 16 REMARK 465 GLY C 17 REMARK 465 CYS C 18 REMARK 465 THR C 19 REMARK 465 ARG C 20 REMARK 465 GLY C 21 REMARK 465 LYS C 22 REMARK 465 HIS C 23 REMARK 465 VAL C 24 REMARK 465 THR C 25 REMARK 465 ALA C 26 REMARK 465 ALA C 27 REMARK 465 PRO C 28 REMARK 465 MET C 29 REMARK 465 ASP C 30 REMARK 465 GLY C 31 REMARK 465 PRO C 32 REMARK 465 ARG C 33 REMARK 465 GLY C 34 REMARK 465 PRO C 35 REMARK 465 SER C 36 REMARK 465 SER C 37 REMARK 465 LEU C 38 REMARK 465 ALA C 39 REMARK 465 GLY C 40 REMARK 465 THR C 41 REMARK 465 PHE C 42 REMARK 465 GLY C 43 REMARK 465 TRP C 44 REMARK 465 GLY C 45 REMARK 465 LEU C 46 REMARK 465 ALA C 47 REMARK 465 ILE C 48 REMARK 465 PRO C 49 REMARK 465 ALA C 50 REMARK 465 GLY C 51 REMARK 465 GLU C 52 REMARK 465 PRO C 53 REMARK 465 CYS C 54 REMARK 465 GLY C 55 REMARK 465 ARG C 56 REMARK 465 VAL C 57 REMARK 465 CYS C 58 REMARK 465 SER C 59 REMARK 465 PRO C 60 REMARK 465 ALA C 61 REMARK 465 THR C 62 REMARK 465 VAL C 63 REMARK 465 GLY C 64 REMARK 465 PHE C 65 REMARK 465 PHE C 66 REMARK 465 PRO C 67 REMARK 465 VAL C 68 REMARK 465 ALA C 69 REMARK 465 LYS C 70 REMARK 465 LYS C 71 REMARK 465 SER C 72 REMARK 465 ASN C 73 REMARK 465 LYS C 74 REMARK 465 GLU C 75 REMARK 465 ASN C 76 REMARK 465 ARG C 77 REMARK 465 PRO C 78 REMARK 465 GLU C 79 REMARK 465 ALA C 80 REMARK 465 SER C 81 REMARK 465 GLY C 82 REMARK 465 LEU C 83 REMARK 465 PRO C 84 REMARK 465 LEU C 85 REMARK 465 GLU C 86 REMARK 465 SER C 87 REMARK 465 GLU C 88 REMARK 465 ARG C 89 REMARK 465 THR C 90 REMARK 465 GLY C 91 REMARK 465 ASP C 92 REMARK 465 ASN C 93 REMARK 465 PRO C 94 REMARK 465 THR C 95 REMARK 465 VAL C 96 REMARK 465 ARG C 97 REMARK 465 GLY C 98 REMARK 465 SER C 99 REMARK 465 ALA C 100 REMARK 465 GLY C 101 REMARK 465 ALA C 102 REMARK 465 ASP C 103 REMARK 465 PRO C 104 REMARK 465 VAL C 105 REMARK 465 GLY C 106 REMARK 465 GLN C 107 REMARK 465 ASP C 108 REMARK 465 ALA C 109 REMARK 465 PRO C 110 REMARK 465 GLN C 216 REMARK 465 PRO C 217 REMARK 465 GLY C 218 REMARK 465 PRO C 219 REMARK 465 SER C 220 REMARK 465 SER C 221 REMARK 465 GLY C 222 REMARK 465 GLY C 223 REMARK 465 CYS C 224 REMARK 465 SER C 225 REMARK 465 ALA C 226 REMARK 465 GLU C 227 REMARK 465 PRO C 228 REMARK 465 ASP C 229 REMARK 465 PHE C 230 REMARK 465 ARG C 231 REMARK 465 ARG C 232 REMARK 465 ALA C 233 REMARK 465 SER C 234 REMARK 465 GLY C 235 REMARK 465 ALA C 236 REMARK 465 GLU C 237 REMARK 465 GLU C 238 REMARK 465 ALA C 239 REMARK 465 GLY C 240 REMARK 465 GLU C 241 REMARK 465 GLU C 242 REMARK 465 ARG C 243 REMARK 465 CYS C 244 REMARK 465 ALA C 245 REMARK 465 GLU C 246 REMARK 465 ASP C 247 REMARK 465 ALA C 248 REMARK 465 ALA C 249 REMARK 465 ALA C 250 REMARK 465 TYR C 251 REMARK 465 ASP C 252 REMARK 465 PRO C 253 REMARK 465 SER C 254 REMARK 465 ALA C 255 REMARK 465 VAL C 256 REMARK 465 GLY C 257 REMARK 465 GLN C 258 REMARK 465 MET C 259 REMARK 465 ARG C 284 REMARK 465 PRO C 285 REMARK 465 LYS C 286 REMARK 465 THR C 287 REMARK 465 ALA C 288 REMARK 465 GLY C 289 REMARK 465 ARG C 290 REMARK 465 ARG C 291 REMARK 465 ASN C 292 REMARK 465 ASP C 293 REMARK 465 LEU C 294 REMARK 465 HIS C 295 REMARK 465 ASP C 296 REMARK 465 ASP C 297 REMARK 465 ARG C 298 REMARK 465 THR C 299 REMARK 465 ALA C 300 REMARK 465 SER C 301 REMARK 465 ALA C 302 REMARK 465 HIS C 303 REMARK 465 LYS C 304 REMARK 465 ALA C 375 REMARK 465 GLU C 376 REMARK 465 TRP C 377 REMARK 465 HIS C 378 REMARK 465 GLY C 379 REMARK 465 GLY C 380 REMARK 465 ASN C 381 REMARK 465 ARG C 382 REMARK 465 ASP C 383 REMARK 465 TYR C 384 REMARK 465 VAL C 1108 REMARK 465 MET C 1109 REMARK 465 GLY C 1110 REMARK 465 GLY C 1111 REMARK 465 GLY C 1112 REMARK 465 VAL C 1113 REMARK 465 GLY C 1114 REMARK 465 G D 114 REMARK 465 C D 115 REMARK 465 C D 116 REMARK 465 C D 117 REMARK 465 G D 118 REMARK 465 U D 119 REMARK 465 C D 231 REMARK 465 G D 232 REMARK 465 U D 233 REMARK 465 A D 234 REMARK 465 C D 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 262 OD1 OD2 REMARK 470 ARG C 265 NE CZ NH1 NH2 REMARK 470 GLU C 269 OE1 OE2 REMARK 470 GLU C 272 OE1 OE2 REMARK 470 ARG C 276 NE CZ NH1 NH2 REMARK 470 ARG C 277 NE CZ NH1 NH2 REMARK 470 ARG C 278 NE CZ NH1 NH2 REMARK 470 ARG C 281 NE CZ NH1 NH2 REMARK 470 MET C 283 SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 989 OE1 GLU C 1035 2.02 REMARK 500 OD1 ASP C 515 NZ LYS C 519 2.05 REMARK 500 OP1 DT B 49 NH1 ARG C 188 2.15 REMARK 500 NH2 ARG C 443 OG1 THR C 565 2.17 REMARK 500 O ARG C 661 NH2 ARG C 693 2.17 REMARK 500 NH1 ARG C 901 O2 C D 126 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 16 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA A 32 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA B 22 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA B 37 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT B 49 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 323 -105.65 -111.64 REMARK 500 ASP C 334 36.24 -96.68 REMARK 500 VAL C 340 -100.59 49.88 REMARK 500 SER C 343 167.54 83.09 REMARK 500 GLU C 346 -32.06 66.86 REMARK 500 LYS C 532 -7.89 72.24 REMARK 500 VAL C 586 86.82 57.45 REMARK 500 GLN C 588 0.14 -65.40 REMARK 500 ARG C 611 54.52 -93.32 REMARK 500 MET C 618 -8.39 72.51 REMARK 500 TYR C 628 -60.66 -93.35 REMARK 500 HIS C 673 -3.47 67.89 REMARK 500 LYS C 690 74.29 49.80 REMARK 500 SER C 696 -168.33 -129.85 REMARK 500 LEU C 704 61.68 61.82 REMARK 500 ALA C 799 -99.43 57.98 REMARK 500 ILE C 800 74.18 44.70 REMARK 500 HIS C 870 46.95 -83.52 REMARK 500 GLU C 983 73.73 52.22 REMARK 500 ARG C1001 113.90 -162.46 REMARK 500 VAL C1004 105.77 63.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 114 SG REMARK 620 2 CYS C 117 SG 116.2 REMARK 620 3 HIS C 130 NE2 108.9 72.8 REMARK 620 4 HIS C 135 NE2 125.0 115.6 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 934 SG REMARK 620 2 CYS C 938 SG 111.5 REMARK 620 3 HIS C 946 NE2 100.7 120.8 REMARK 620 4 CYS C 951 SG 113.1 112.4 97.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-35347 RELATED DB: EMDB REMARK 900 STRUCTURE OF R2 WITH 3'UTR AND DNA DBREF 8IBW A 1 60 PDB 8IBW 8IBW 1 60 DBREF 8IBW B 1 60 PDB 8IBW 8IBW 1 60 DBREF 8IBW C 1 1114 UNP V9H052 V9H052_BOMMO 1 1114 DBREF 8IBW D 30 247 PDB 8IBW 8IBW 30 247 SEQADV 8IBW TYR C 628 UNP V9H052 ASP 628 CONFLICT SEQADV 8IBW ALA C 996 UNP V9H052 ASP 996 CONFLICT SEQRES 1 A 60 DC DA DA DG DC DG DC DG DG DG DT DA DA SEQRES 2 A 60 DA DC DG DG DC DG DG DG DA DG DT DA DA SEQRES 3 A 60 DC DT DA DT DG DA DC DT DC DT DC DT DT SEQRES 4 A 60 DA DA DG DG DT DA DG DC DC DA DA DA DT SEQRES 5 A 60 DG DC DC DT DC DG DT DC SEQRES 1 B 60 DG DA DC DG DA DG DG DC DA DT DT DT DG SEQRES 2 B 60 DG DC DT DA DC DC DT DT DA DA DG DA DG SEQRES 3 B 60 DA DG DT DC DA DT DA DG DT DT DA DC DT SEQRES 4 B 60 DC DC DC DG DC DC DG DT DT DT DA DC DC SEQRES 5 B 60 DC DG DC DG DC DT DT DG SEQRES 1 C 1114 MET MET ALA SER THR ALA LEU SER LEU MET GLY ARG CYS SEQRES 2 C 1114 ASN PRO ASP GLY CYS THR ARG GLY LYS HIS VAL THR ALA SEQRES 3 C 1114 ALA PRO MET ASP GLY PRO ARG GLY PRO SER SER LEU ALA SEQRES 4 C 1114 GLY THR PHE GLY TRP GLY LEU ALA ILE PRO ALA GLY GLU SEQRES 5 C 1114 PRO CYS GLY ARG VAL CYS SER PRO ALA THR VAL GLY PHE SEQRES 6 C 1114 PHE PRO VAL ALA LYS LYS SER ASN LYS GLU ASN ARG PRO SEQRES 7 C 1114 GLU ALA SER GLY LEU PRO LEU GLU SER GLU ARG THR GLY SEQRES 8 C 1114 ASP ASN PRO THR VAL ARG GLY SER ALA GLY ALA ASP PRO SEQRES 9 C 1114 VAL GLY GLN ASP ALA PRO GLY TRP THR CYS GLN PHE CYS SEQRES 10 C 1114 GLU ARG THR PHE SER THR ASN ARG GLY LEU GLY VAL HIS SEQRES 11 C 1114 LYS ARG ARG ALA HIS PRO VAL GLU THR ASN THR ASP ALA SEQRES 12 C 1114 ALA PRO MET MET VAL LYS ARG ARG TRP HIS GLY GLU GLU SEQRES 13 C 1114 ILE ASP LEU LEU ALA ARG THR GLU ALA ARG LEU LEU ALA SEQRES 14 C 1114 GLU ARG GLY GLN CYS SER GLY GLY ASP LEU PHE GLY ALA SEQRES 15 C 1114 LEU PRO GLY PHE GLY ARG THR LEU GLU ALA ILE LYS GLY SEQRES 16 C 1114 GLN ARG ARG ARG GLU PRO TYR ARG ALA LEU VAL GLN ALA SEQRES 17 C 1114 HIS LEU ALA ARG PHE GLY SER GLN PRO GLY PRO SER SER SEQRES 18 C 1114 GLY GLY CYS SER ALA GLU PRO ASP PHE ARG ARG ALA SER SEQRES 19 C 1114 GLY ALA GLU GLU ALA GLY GLU GLU ARG CYS ALA GLU ASP SEQRES 20 C 1114 ALA ALA ALA TYR ASP PRO SER ALA VAL GLY GLN MET SER SEQRES 21 C 1114 PRO ASP ALA ALA ARG VAL LEU SER GLU LEU LEU GLU GLY SEQRES 22 C 1114 ALA GLY ARG ARG ARG ALA CYS ARG ALA MET ARG PRO LYS SEQRES 23 C 1114 THR ALA GLY ARG ARG ASN ASP LEU HIS ASP ASP ARG THR SEQRES 24 C 1114 ALA SER ALA HIS LYS THR SER ARG GLN LYS ARG ARG ALA SEQRES 25 C 1114 GLU TYR ALA ARG VAL GLN GLU LEU TYR LYS LYS CYS ARG SEQRES 26 C 1114 SER ARG ALA ALA ALA GLU VAL ILE ASP GLY ALA CYS GLY SEQRES 27 C 1114 GLY VAL GLY HIS SER LEU GLU GLU MET GLU THR TYR TRP SEQRES 28 C 1114 ARG PRO ILE LEU GLU ARG VAL SER ASP ALA PRO GLY PRO SEQRES 29 C 1114 THR PRO GLU ALA LEU HIS ALA LEU GLY ARG ALA GLU TRP SEQRES 30 C 1114 HIS GLY GLY ASN ARG ASP TYR THR GLN LEU TRP LYS PRO SEQRES 31 C 1114 ILE SER VAL GLU GLU ILE LYS ALA SER ARG PHE ASP TRP SEQRES 32 C 1114 ARG THR SER PRO GLY PRO ASP GLY ILE ARG SER GLY GLN SEQRES 33 C 1114 TRP ARG ALA VAL PRO VAL HIS LEU LYS ALA GLU MET PHE SEQRES 34 C 1114 ASN ALA TRP MET ALA ARG GLY GLU ILE PRO GLU ILE LEU SEQRES 35 C 1114 ARG GLN CYS ARG THR VAL PHE VAL PRO LYS VAL GLU ARG SEQRES 36 C 1114 PRO GLY GLY PRO GLY GLU TYR ARG PRO ILE SER ILE ALA SEQRES 37 C 1114 SER ILE PRO LEU ARG HIS PHE HIS SER ILE LEU ALA ARG SEQRES 38 C 1114 ARG LEU LEU ALA CYS CYS PRO PRO ASP ALA ARG GLN ARG SEQRES 39 C 1114 GLY PHE ILE CYS ALA ASP GLY THR LEU GLU ASN SER ALA SEQRES 40 C 1114 VAL LEU ASP ALA VAL LEU GLY ASP SER ARG LYS LYS LEU SEQRES 41 C 1114 ARG GLU CYS HIS VAL ALA VAL LEU ASP PHE ALA LYS ALA SEQRES 42 C 1114 PHE ASP THR VAL SER HIS GLU ALA LEU VAL GLU LEU LEU SEQRES 43 C 1114 ARG LEU ARG GLY MET PRO GLU GLN PHE CYS GLY TYR ILE SEQRES 44 C 1114 ALA HIS LEU TYR ASP THR ALA SER THR THR LEU ALA VAL SEQRES 45 C 1114 ASN ASN GLU MET SER SER PRO VAL LYS VAL GLY ARG GLY SEQRES 46 C 1114 VAL ARG GLN GLY ASP PRO LEU SER PRO ILE LEU PHE ASN SEQRES 47 C 1114 VAL VAL MET ASP LEU ILE LEU ALA SER LEU PRO GLU ARG SEQRES 48 C 1114 VAL GLY TYR ARG LEU GLU MET GLU LEU VAL SER ALA LEU SEQRES 49 C 1114 ALA TYR ALA TYR ASP LEU VAL LEU LEU ALA GLY SER LYS SEQRES 50 C 1114 VAL GLY MET GLN GLU SER ILE SER ALA VAL ASP CYS VAL SEQRES 51 C 1114 GLY ARG GLN MET GLY LEU ARG LEU ASN CYS ARG LYS SER SEQRES 52 C 1114 ALA VAL LEU SER MET ILE PRO ASP GLY HIS ARG LYS LYS SEQRES 53 C 1114 HIS HIS TYR LEU THR GLU ARG THR PHE ASN ILE GLY GLY SEQRES 54 C 1114 LYS PRO LEU ARG GLN VAL SER CYS VAL GLU ARG TRP ARG SEQRES 55 C 1114 TYR LEU GLY VAL ASP PHE GLU ALA SER GLY CYS VAL THR SEQRES 56 C 1114 LEU GLU HIS SER ILE SER SER ALA LEU ASN ASN ILE SER SEQRES 57 C 1114 ARG ALA PRO LEU LYS PRO GLN GLN ARG LEU GLU ILE LEU SEQRES 58 C 1114 ARG ALA HIS LEU ILE PRO ARG PHE GLN HIS GLY PHE VAL SEQRES 59 C 1114 LEU GLY ASN ILE SER ASP ASP ARG LEU ARG MET LEU ASP SEQRES 60 C 1114 VAL GLN ILE ARG LYS ALA VAL GLY GLN TRP LEU ARG LEU SEQRES 61 C 1114 PRO ALA ASP VAL PRO LYS ALA TYR TYR HIS ALA ALA VAL SEQRES 62 C 1114 GLN ASP GLY GLY LEU ALA ILE PRO SER VAL ARG ALA THR SEQRES 63 C 1114 ILE PRO ASP LEU ILE VAL ARG ARG PHE GLY GLY LEU ASP SEQRES 64 C 1114 SER SER PRO TRP SER VAL ALA ARG ALA ALA ALA LYS SER SEQRES 65 C 1114 ASP LYS ILE ARG LYS LYS LEU ARG TRP ALA TRP LYS GLN SEQRES 66 C 1114 LEU ARG ARG PHE SER ARG VAL ASP SER THR THR GLN ARG SEQRES 67 C 1114 PRO SER VAL ARG LEU PHE TRP ARG GLU HIS LEU HIS ALA SEQRES 68 C 1114 SER VAL ASP GLY ARG GLU LEU ARG GLU SER THR ARG THR SEQRES 69 C 1114 PRO THR SER THR LYS TRP ILE ARG GLU ARG CYS ALA GLN SEQRES 70 C 1114 ILE THR GLY ARG ASP PHE VAL GLN PHE VAL HIS THR HIS SEQRES 71 C 1114 ILE ASN ALA LEU PRO SER ARG ILE ARG GLY SER ARG GLY SEQRES 72 C 1114 ARG ARG GLY GLY GLY GLU SER SER LEU THR CYS ARG ALA SEQRES 73 C 1114 GLY CYS LYS VAL ARG GLU THR THR ALA HIS ILE LEU GLN SEQRES 74 C 1114 GLN CYS HIS ARG THR HIS GLY GLY ARG ILE LEU ARG HIS SEQRES 75 C 1114 ASN LYS ILE VAL SER PHE VAL ALA LYS ALA MET GLU GLU SEQRES 76 C 1114 ASN LYS TRP THR VAL GLU LEU GLU PRO ARG LEU ARG THR SEQRES 77 C 1114 SER VAL GLY LEU ARG LYS PRO ALA ILE ILE ALA SER ARG SEQRES 78 C 1114 ASP GLY VAL GLY VAL ILE VAL ASP VAL GLN VAL VAL SER SEQRES 79 C 1114 GLY GLN ARG SER LEU ASP GLU LEU HIS ARG GLU LYS ARG SEQRES 80 C 1114 ASN LYS TYR GLY ASN HIS GLY GLU LEU VAL GLU LEU VAL SEQRES 81 C 1114 ALA GLY ARG LEU GLY LEU PRO LYS ALA GLU CYS VAL ARG SEQRES 82 C 1114 ALA THR SER CYS THR ILE SER TRP ARG GLY VAL TRP SER SEQRES 83 C 1114 LEU THR SER TYR LYS GLU LEU ARG SER ILE ILE GLY LEU SEQRES 84 C 1114 ARG GLU PRO THR LEU GLN ILE VAL PRO ILE LEU ALA LEU SEQRES 85 C 1114 ARG GLY SER HIS MET ASN TRP THR ARG PHE ASN GLN MET SEQRES 86 C 1114 THR SER VAL MET GLY GLY GLY VAL GLY SEQRES 1 D 50 G U A G A U C A G G C C C SEQRES 2 D 50 G U C U G A U C C A A U U SEQRES 3 D 50 U C G C C G G C G U A C C SEQRES 4 D 50 C G G C G A U G A A A HET ZN C1201 1 HET ZN C1202 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) HELIX 1 AA1 THR C 123 HIS C 135 1 13 HELIX 2 AA2 HIS C 135 ALA C 143 1 9 HELIX 3 AA3 HIS C 153 GLY C 172 1 20 HELIX 4 AA4 SER C 175 LEU C 183 1 9 HELIX 5 AA5 PRO C 184 GLY C 187 5 4 HELIX 6 AA6 THR C 189 ARG C 198 1 10 HELIX 7 AA7 ARG C 199 GLY C 214 1 16 HELIX 8 AA8 PRO C 261 MET C 283 1 23 HELIX 9 AA9 SER C 306 LYS C 322 1 17 HELIX 10 AB1 CYS C 324 ASP C 334 1 11 HELIX 11 AB2 SER C 343 ARG C 357 1 15 HELIX 12 AB3 THR C 365 GLY C 373 1 9 HELIX 13 AB4 SER C 392 SER C 399 1 8 HELIX 14 AB5 ARG C 413 VAL C 420 1 8 HELIX 15 AB6 PRO C 421 GLY C 436 1 16 HELIX 16 AB7 PRO C 439 GLN C 444 5 6 HELIX 17 AB8 GLY C 458 GLY C 460 5 3 HELIX 18 AB9 SER C 469 CYS C 487 1 19 HELIX 19 AC1 GLY C 501 LEU C 520 1 20 HELIX 20 AC2 LYS C 532 THR C 536 5 5 HELIX 21 AC3 SER C 538 ARG C 549 1 12 HELIX 22 AC4 PRO C 552 THR C 565 1 14 HELIX 23 AC5 LEU C 592 LEU C 608 1 17 HELIX 24 AC6 SER C 636 GLY C 655 1 20 HELIX 25 AC7 SER C 719 ALA C 730 1 12 HELIX 26 AC8 LYS C 733 HIS C 744 1 12 HELIX 27 AC9 HIS C 744 GLY C 756 1 13 HELIX 28 AD1 SER C 759 ARG C 779 1 21 HELIX 29 AD2 PRO C 785 ALA C 791 1 7 HELIX 30 AD3 SER C 802 GLY C 817 1 16 HELIX 31 AD4 LEU C 818 SER C 821 5 4 HELIX 32 AD5 TRP C 823 LYS C 831 1 9 HELIX 33 AD6 SER C 832 PHE C 849 1 18 HELIX 34 AD7 VAL C 861 HIS C 870 1 10 HELIX 35 AD8 SER C 872 GLU C 877 1 6 HELIX 36 AD9 PRO C 885 LYS C 889 5 5 HELIX 37 AE1 THR C 899 ILE C 911 1 13 HELIX 38 AE2 SER C 916 SER C 921 1 6 HELIX 39 AE3 THR C 943 GLN C 950 1 8 HELIX 40 AE4 ARG C 953 GLU C 974 1 22 HELIX 41 AE5 SER C 1018 ASN C 1032 1 15 HELIX 42 AE6 GLY C 1034 GLY C 1045 1 12 HELIX 43 AE7 LYS C 1048 VAL C 1052 5 5 HELIX 44 AE8 SER C 1066 ILE C 1076 1 11 HELIX 45 AE9 ARG C 1080 MET C 1105 1 26 SHEET 1 AA1 2 TRP C 112 THR C 113 0 SHEET 2 AA1 2 THR C 120 PHE C 121 -1 O PHE C 121 N TRP C 112 SHEET 1 AA2 2 VAL C 448 PRO C 451 0 SHEET 2 AA2 2 TYR C 462 ILE C 465 -1 O ILE C 465 N VAL C 448 SHEET 1 AA3 4 ASP C 629 ALA C 634 0 SHEET 2 AA3 4 CYS C 523 ASP C 529 -1 N HIS C 524 O ALA C 634 SHEET 3 AA3 4 ALA C 664 MET C 668 -1 O LEU C 666 N VAL C 525 SHEET 4 AA3 4 ARG C 693 GLN C 694 1 O ARG C 693 N VAL C 665 SHEET 1 AA4 2 SER C 567 THR C 568 0 SHEET 2 AA4 2 VAL C 580 LYS C 581 -1 O VAL C 580 N THR C 568 SHEET 1 AA5 2 ALA C 571 VAL C 572 0 SHEET 2 AA5 2 GLU C 575 MET C 576 -1 O GLU C 575 N VAL C 572 SHEET 1 AA6 2 TYR C 614 LEU C 616 0 SHEET 2 AA6 2 GLU C 619 VAL C 621 -1 O VAL C 621 N TYR C 614 SHEET 1 AA7 2 TRP C 701 ARG C 702 0 SHEET 2 AA7 2 ASP C 707 PHE C 708 -1 O PHE C 708 N TRP C 701 SHEET 1 AA8 2 ARG C 851 VAL C 852 0 SHEET 2 AA8 2 PRO C 859 SER C 860 -1 O SER C 860 N ARG C 851 SHEET 1 AA9 2 GLU C 981 LEU C 982 0 SHEET 2 AA9 2 ILE C 997 ILE C 998 -1 O ILE C 998 N GLU C 981 SHEET 1 AB1 2 ILE C1007 VAL C1013 0 SHEET 2 AB1 2 ALA C1054 SER C1060 1 O CYS C1057 N ASP C1009 LINK SG CYS C 114 ZN ZN C1201 1555 1555 2.31 LINK SG CYS C 117 ZN ZN C1201 1555 1555 2.31 LINK NE2 HIS C 130 ZN ZN C1201 1555 1555 2.04 LINK NE2 HIS C 135 ZN ZN C1201 1555 1555 2.05 LINK SG CYS C 934 ZN ZN C1202 1555 1555 2.31 LINK SG CYS C 938 ZN ZN C1202 1555 1555 2.31 LINK NE2 HIS C 946 ZN ZN C1202 1555 1555 2.06 LINK SG CYS C 951 ZN ZN C1202 1555 1555 2.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000