data_8IC9 # _entry.id 8IC9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8IC9 pdb_00008ic9 10.2210/pdb8ic9/pdb WWPDB D_1300035393 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8IC9 _pdbx_database_status.recvd_initial_deposition_date 2023-02-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hiranyakorn, M.' 1 ? 'Yagi-Utsumi, M.' 2 ? 'Yanaka, S.' 3 ? 'Ohtsuka, N.' 4 ? 'Momiyama, N.' 5 ? 'Satoh, T.' 6 ? 'Kato, K.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int J Mol Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1422-0067 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Mutational and Environmental Effects on the Dynamic Conformational Distributions of Lys48-Linked Ubiquitin Chains.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/ijms24076075 _citation.pdbx_database_id_PubMed 37047047 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hiranyakorn, M.' 1 0000-0002-6770-3742 primary 'Yagi-Utsumi, M.' 2 0000-0001-8144-740X primary 'Yanaka, S.' 3 0000-0002-3513-5701 primary 'Ohtsuka, N.' 4 0000-0003-1391-1850 primary 'Momiyama, N.' 5 ? primary 'Satoh, T.' 6 0000-0002-4493-4978 primary 'Kato, K.' 7 0000-0001-7187-9612 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 106.929 _cell.angle_beta_esd ? _cell.angle_gamma 88.650 _cell.angle_gamma_esd ? _cell.entry_id 8IC9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 86.790 _cell.length_a_esd ? _cell.length_b 31.191 _cell.length_b_esd ? _cell.length_c 25.272 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8IC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Polyubiquitin-B 8550.794 2 ? K48C ? ? 2 polymer man Ubiquitin 8576.831 2 ? ? ? ? 3 water nat water 18.015 174 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGCQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGCQLEDGRTLSDYNIQKESTLHLVLRLRGG A,C ? 2 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ILE n 1 4 PHE n 1 5 VAL n 1 6 LYS n 1 7 THR n 1 8 LEU n 1 9 THR n 1 10 GLY n 1 11 LYS n 1 12 THR n 1 13 ILE n 1 14 THR n 1 15 LEU n 1 16 GLU n 1 17 VAL n 1 18 GLU n 1 19 PRO n 1 20 SER n 1 21 ASP n 1 22 THR n 1 23 ILE n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 LYS n 1 28 ALA n 1 29 LYS n 1 30 ILE n 1 31 GLN n 1 32 ASP n 1 33 LYS n 1 34 GLU n 1 35 GLY n 1 36 ILE n 1 37 PRO n 1 38 PRO n 1 39 ASP n 1 40 GLN n 1 41 GLN n 1 42 ARG n 1 43 LEU n 1 44 ILE n 1 45 PHE n 1 46 ALA n 1 47 GLY n 1 48 CYS n 1 49 GLN n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 GLY n 1 54 ARG n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 ASP n 1 59 TYR n 1 60 ASN n 1 61 ILE n 1 62 GLN n 1 63 LYS n 1 64 GLU n 1 65 SER n 1 66 THR n 1 67 LEU n 1 68 HIS n 1 69 LEU n 1 70 VAL n 1 71 LEU n 1 72 ARG n 1 73 LEU n 1 74 ARG n 1 75 GLY n 1 76 GLY n 2 1 MET n 2 2 GLN n 2 3 ILE n 2 4 PHE n 2 5 VAL n 2 6 LYS n 2 7 THR n 2 8 LEU n 2 9 THR n 2 10 GLY n 2 11 LYS n 2 12 THR n 2 13 ILE n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 VAL n 2 18 GLU n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 THR n 2 23 ILE n 2 24 GLU n 2 25 ASN n 2 26 VAL n 2 27 LYS n 2 28 ALA n 2 29 LYS n 2 30 ILE n 2 31 GLN n 2 32 ASP n 2 33 LYS n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 PRO n 2 38 PRO n 2 39 ASP n 2 40 GLN n 2 41 GLN n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 PHE n 2 46 ALA n 2 47 GLY n 2 48 LYS n 2 49 GLN n 2 50 LEU n 2 51 GLU n 2 52 ASP n 2 53 GLY n 2 54 ARG n 2 55 THR n 2 56 LEU n 2 57 SER n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 ILE n 2 62 GLN n 2 63 LYS n 2 64 GLU n 2 65 SER n 2 66 THR n 2 67 LEU n 2 68 HIS n 2 69 LEU n 2 70 VAL n 2 71 LEU n 2 72 ARG n 2 73 LEU n 2 74 ARG n 2 75 GLY n 2 76 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 76 human ? UBB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PT7 ? ? 2 1 sample 'Biological sequence' 1 76 human ? UBB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? LASMID ? ? ? pT7 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP UBB_HUMAN P0CG47 ? 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 2 UNP UBB_HUMAN P0CG47 ? 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8IC9 A 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 2 2 8IC9 B 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 3 1 8IC9 C 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 4 2 8IC9 D 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8IC9 CYS A 48 ? UNP P0CG47 LYS 48 'engineered mutation' 48 1 3 8IC9 CYS C 48 ? UNP P0CG47 LYS 48 'engineered mutation' 48 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8IC9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '38% 2-methyl-2,4-pentanediol and 50 mM sodium citrate (pH 4.0)' _exptl_crystal_grow.pdbx_pH_range 4.0-4.5 _exptl_crystal_grow.temp 277 # _diffrn.ambient_environment ? _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-07-19 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8IC9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.25 _reflns.d_resolution_low 19.641 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 66682 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.992 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.27 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 11849 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.911 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.554 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -1.427 _refine.aniso_B[1][2] 0.758 _refine.aniso_B[1][3] -0.568 _refine.aniso_B[2][2] 1.236 _refine.aniso_B[2][3] 0.399 _refine.aniso_B[3][3] 0.491 _refine.B_iso_max ? _refine.B_iso_mean 22.291 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.981 _refine.correlation_coeff_Fo_to_Fc_free 0.978 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8IC9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.250 _refine.ls_d_res_low 19.641 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 66680 _refine.ls_number_reflns_R_free 3360 _refine.ls_number_reflns_R_work 63320 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.071 _refine.ls_percent_reflns_R_free 5.039 _refine.ls_R_factor_all 0.188 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2188 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1861 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.267 _refine.ls_wR_factor_R_work 0.222 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.061 _refine.pdbx_overall_ESU_R_Free 0.057 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.280 _refine.overall_SU_ML 0.041 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work 0.9488 _refine.pdbx_average_fsc_free 0.9412 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.250 _refine_hist.d_res_low 19.641 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 2574 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2400 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 0.013 2440 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.015 2468 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.574 1.657 3282 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.396 1.591 5710 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.175 5.000 304 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 33.019 23.548 124 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.336 15.000 498 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 14.018 15.000 16 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 338 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 2702 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 498 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.212 0.200 357 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.183 0.200 2266 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.160 0.200 1145 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.080 0.200 1230 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.143 0.200 133 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.038 0.200 1 ? r_symmetry_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.233 0.200 28 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.217 0.200 86 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.187 0.200 30 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 3.836 1.963 1216 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.824 1.957 1214 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.607 2.930 1514 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 4.591 2.930 1514 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.958 2.466 1224 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.959 2.466 1224 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 4.631 3.479 1766 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.629 3.479 1766 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.087 23.341 2465 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 5.088 23.335 2463 ? r_lrange_other ? ? 'X-RAY DIFFRACTION' ? 3.196 3.000 4908 ? r_rigid_bond_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.250 1.282 . . 288 4487 93.2253 . . . . 0.392 . . . . . . . . . . . 0.372 'X-RAY DIFFRACTION' 1.282 1.317 . . 250 4478 93.1259 . . . . 0.357 . . . . . . . . . . . 0.357 'X-RAY DIFFRACTION' 1.317 1.355 . . 247 4357 93.8060 . . . . 0.344 . . . . . . . . . . . 0.343 'X-RAY DIFFRACTION' 1.355 1.397 . . 216 4230 94.1351 . . . . 0.314 . . . . . . . . . . . 0.386 'X-RAY DIFFRACTION' 1.397 1.442 . . 212 4110 93.7527 . . . . 0.304 . . . . . . . . . . . 0.312 'X-RAY DIFFRACTION' 1.442 1.493 . . 197 4104 94.6106 . . . . 0.262 . . . . . . . . . . . 0.283 'X-RAY DIFFRACTION' 1.493 1.549 . . 168 3864 94.4262 . . . . 0.221 . . . . . . . . . . . 0.275 'X-RAY DIFFRACTION' 1.549 1.612 . . 197 3734 94.4498 . . . . 0.212 . . . . . . . . . . . 0.244 'X-RAY DIFFRACTION' 1.612 1.683 . . 196 3614 95.3931 . . . . 0.196 . . . . . . . . . . . 0.244 'X-RAY DIFFRACTION' 1.683 1.764 . . 199 3382 95.1887 . . . . 0.162 . . . . . . . . . . . 0.232 'X-RAY DIFFRACTION' 1.764 1.859 . . 199 3276 96.1007 . . . . 0.154 . . . . . . . . . . . 0.216 'X-RAY DIFFRACTION' 1.859 1.971 . . 162 3169 96.4948 . . . . 0.126 . . . . . . . . . . . 0.240 'X-RAY DIFFRACTION' 1.971 2.105 . . 137 3006 96.8269 . . . . 0.139 . . . . . . . . . . . 0.171 'X-RAY DIFFRACTION' 2.105 2.272 . . 145 2722 96.8581 . . . . 0.142 . . . . . . . . . . . 0.175 'X-RAY DIFFRACTION' 2.272 2.486 . . 146 2553 97.2613 . . . . 0.148 . . . . . . . . . . . 0.194 'X-RAY DIFFRACTION' 2.486 2.774 . . 112 2312 97.2713 . . . . 0.161 . . . . . . . . . . . 0.223 'X-RAY DIFFRACTION' 2.774 3.192 . . 94 2064 97.4266 . . . . 0.156 . . . . . . . . . . . 0.228 'X-RAY DIFFRACTION' 3.192 3.885 . . 92 1727 97.4812 . . . . 0.172 . . . . . . . . . . . 0.175 'X-RAY DIFFRACTION' 3.885 5.394 . . 37 1397 97.5510 . . . . 0.167 . . . . . . . . . . . 0.167 'X-RAY DIFFRACTION' 5.394 19.641 . . 66 734 93.5673 . . . . 0.258 . . . . . . . . . . . 0.172 # _struct.entry_id 8IC9 _struct.title 'Lys48-linked K48C-diubiquitin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8IC9 _struct_keywords.text 'UBIQUITIN, ISOPEPTIDE BOND, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 22 ? GLY A 35 ? THR A 22 GLY A 35 1 ? 14 HELX_P HELX_P2 AA2 PRO A 37 ? ASP A 39 ? PRO A 37 ASP A 39 5 ? 3 HELX_P HELX_P3 AA3 THR B 22 ? GLY B 35 ? THR B 22 GLY B 35 1 ? 14 HELX_P HELX_P4 AA4 PRO B 37 ? ASP B 39 ? PRO B 37 ASP B 39 5 ? 3 HELX_P HELX_P5 AA5 LEU B 56 ? ASN B 60 ? LEU B 56 ASN B 60 5 ? 5 HELX_P HELX_P6 AA6 THR C 22 ? GLY C 35 ? THR C 22 GLY C 35 1 ? 14 HELX_P HELX_P7 AA7 PRO C 37 ? ASP C 39 ? PRO C 37 ASP C 39 5 ? 3 HELX_P HELX_P8 AA8 LEU C 56 ? ASN C 60 ? LEU C 56 ASN C 60 5 ? 5 HELX_P HELX_P9 AA9 THR D 22 ? GLY D 35 ? THR D 22 GLY D 35 1 ? 14 HELX_P HELX_P10 AB1 PRO D 37 ? ASP D 39 ? PRO D 37 ASP D 39 5 ? 3 HELX_P HELX_P11 AB2 LEU D 56 ? ASN D 60 ? LEU D 56 ASN D 60 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 12 ? GLU A 16 ? THR A 12 GLU A 16 AA1 2 GLN A 2 ? THR A 7 ? GLN A 2 THR A 7 AA1 3 THR A 66 ? LEU A 71 ? THR A 66 LEU A 71 AA1 4 GLN A 41 ? PHE A 45 ? GLN A 41 PHE A 45 AA1 5 CYS A 48 ? GLN A 49 ? CYS A 48 GLN A 49 AA2 1 THR B 12 ? GLU B 16 ? THR B 12 GLU B 16 AA2 2 GLN B 2 ? THR B 7 ? GLN B 2 THR B 7 AA2 3 THR B 66 ? LEU B 71 ? THR B 66 LEU B 71 AA2 4 GLN B 41 ? PHE B 45 ? GLN B 41 PHE B 45 AA2 5 LYS B 48 ? GLN B 49 ? LYS B 48 GLN B 49 AA3 1 THR C 12 ? GLU C 16 ? THR C 12 GLU C 16 AA3 2 GLN C 2 ? THR C 7 ? GLN C 2 THR C 7 AA3 3 THR C 66 ? LEU C 71 ? THR C 66 LEU C 71 AA3 4 GLN C 41 ? PHE C 45 ? GLN C 41 PHE C 45 AA3 5 CYS C 48 ? GLN C 49 ? CYS C 48 GLN C 49 AA4 1 THR D 12 ? GLU D 16 ? THR D 12 GLU D 16 AA4 2 GLN D 2 ? THR D 7 ? GLN D 2 THR D 7 AA4 3 THR D 66 ? LEU D 71 ? THR D 66 LEU D 71 AA4 4 GLN D 41 ? PHE D 45 ? GLN D 41 PHE D 45 AA4 5 LYS D 48 ? GLN D 49 ? LYS D 48 GLN D 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 13 ? O ILE A 13 N VAL A 5 ? N VAL A 5 AA1 2 3 N PHE A 4 ? N PHE A 4 O LEU A 67 ? O LEU A 67 AA1 3 4 O HIS A 68 ? O HIS A 68 N ILE A 44 ? N ILE A 44 AA1 4 5 N PHE A 45 ? N PHE A 45 O CYS A 48 ? O CYS A 48 AA2 1 2 O ILE B 13 ? O ILE B 13 N VAL B 5 ? N VAL B 5 AA2 2 3 N PHE B 4 ? N PHE B 4 O LEU B 67 ? O LEU B 67 AA2 3 4 O HIS B 68 ? O HIS B 68 N ILE B 44 ? N ILE B 44 AA2 4 5 N PHE B 45 ? N PHE B 45 O LYS B 48 ? O LYS B 48 AA3 1 2 O ILE C 13 ? O ILE C 13 N VAL C 5 ? N VAL C 5 AA3 2 3 N PHE C 4 ? N PHE C 4 O LEU C 67 ? O LEU C 67 AA3 3 4 O HIS C 68 ? O HIS C 68 N ILE C 44 ? N ILE C 44 AA3 4 5 N PHE C 45 ? N PHE C 45 O CYS C 48 ? O CYS C 48 AA4 1 2 O ILE D 13 ? O ILE D 13 N VAL D 5 ? N VAL D 5 AA4 2 3 N PHE D 4 ? N PHE D 4 O LEU D 67 ? O LEU D 67 AA4 3 4 O HIS D 68 ? O HIS D 68 N ILE D 44 ? N ILE D 44 AA4 4 5 N PHE D 45 ? N PHE D 45 O LYS D 48 ? O LYS D 48 # _atom_sites.entry_id 8IC9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.011522 _atom_sites.fract_transf_matrix[1][2] -0.000272 _atom_sites.fract_transf_matrix[1][3] 0.003509 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032069 _atom_sites.fract_transf_matrix[2][3] -0.000230 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041363 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 1.026 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLY 76 76 76 GLY GLY A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 ILE 3 3 3 ILE ILE B . n B 2 4 PHE 4 4 4 PHE PHE B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 LYS 6 6 6 LYS LYS B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 LEU 8 8 8 LEU LEU B . n B 2 9 THR 9 9 9 THR THR B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 ILE 13 13 13 ILE ILE B . n B 2 14 THR 14 14 14 THR THR B . n B 2 15 LEU 15 15 15 LEU LEU B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 VAL 17 17 17 VAL VAL B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 PRO 19 19 19 PRO PRO B . n B 2 20 SER 20 20 20 SER SER B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 THR 22 22 22 THR THR B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 GLU 24 24 24 GLU GLU B . n B 2 25 ASN 25 25 25 ASN ASN B . n B 2 26 VAL 26 26 26 VAL VAL B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 LYS 29 29 29 LYS LYS B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 GLN 31 31 31 GLN GLN B . n B 2 32 ASP 32 32 32 ASP ASP B . n B 2 33 LYS 33 33 33 LYS LYS B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 PRO 38 38 38 PRO PRO B . n B 2 39 ASP 39 39 39 ASP ASP B . n B 2 40 GLN 40 40 40 GLN GLN B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 ARG 42 42 42 ARG ARG B . n B 2 43 LEU 43 43 43 LEU LEU B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 PHE 45 45 45 PHE PHE B . n B 2 46 ALA 46 46 46 ALA ALA B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 LYS 48 48 48 LYS LYS B . n B 2 49 GLN 49 49 49 GLN GLN B . n B 2 50 LEU 50 50 50 LEU LEU B . n B 2 51 GLU 51 51 51 GLU GLU B . n B 2 52 ASP 52 52 52 ASP ASP B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ARG 54 54 54 ARG ARG B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 LYS 63 63 63 LYS LYS B . n B 2 64 GLU 64 64 64 GLU GLU B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 THR 66 66 66 THR THR B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 HIS 68 68 68 HIS HIS B . n B 2 69 LEU 69 69 69 LEU LEU B . n B 2 70 VAL 70 70 70 VAL VAL B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 ARG 72 72 72 ARG ARG B . n B 2 73 LEU 73 73 73 LEU LEU B . n B 2 74 ARG 74 74 74 ARG ARG B . n B 2 75 GLY 75 75 75 GLY GLY B . n B 2 76 GLY 76 76 76 GLY GLY B . n C 1 1 MET 1 1 1 MET MET C . n C 1 2 GLN 2 2 2 GLN GLN C . n C 1 3 ILE 3 3 3 ILE ILE C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 VAL 5 5 5 VAL VAL C . n C 1 6 LYS 6 6 6 LYS LYS C . n C 1 7 THR 7 7 7 THR THR C . n C 1 8 LEU 8 8 8 LEU LEU C . n C 1 9 THR 9 9 9 THR THR C . n C 1 10 GLY 10 10 10 GLY GLY C . n C 1 11 LYS 11 11 11 LYS LYS C . n C 1 12 THR 12 12 12 THR THR C . n C 1 13 ILE 13 13 13 ILE ILE C . n C 1 14 THR 14 14 14 THR THR C . n C 1 15 LEU 15 15 15 LEU LEU C . n C 1 16 GLU 16 16 16 GLU GLU C . n C 1 17 VAL 17 17 17 VAL VAL C . n C 1 18 GLU 18 18 18 GLU GLU C . n C 1 19 PRO 19 19 19 PRO PRO C . n C 1 20 SER 20 20 20 SER SER C . n C 1 21 ASP 21 21 21 ASP ASP C . n C 1 22 THR 22 22 22 THR THR C . n C 1 23 ILE 23 23 23 ILE ILE C . n C 1 24 GLU 24 24 24 GLU GLU C . n C 1 25 ASN 25 25 25 ASN ASN C . n C 1 26 VAL 26 26 26 VAL VAL C . n C 1 27 LYS 27 27 27 LYS LYS C . n C 1 28 ALA 28 28 28 ALA ALA C . n C 1 29 LYS 29 29 29 LYS LYS C . n C 1 30 ILE 30 30 30 ILE ILE C . n C 1 31 GLN 31 31 31 GLN GLN C . n C 1 32 ASP 32 32 32 ASP ASP C . n C 1 33 LYS 33 33 33 LYS LYS C . n C 1 34 GLU 34 34 34 GLU GLU C . n C 1 35 GLY 35 35 35 GLY GLY C . n C 1 36 ILE 36 36 36 ILE ILE C . n C 1 37 PRO 37 37 37 PRO PRO C . n C 1 38 PRO 38 38 38 PRO PRO C . n C 1 39 ASP 39 39 39 ASP ASP C . n C 1 40 GLN 40 40 40 GLN GLN C . n C 1 41 GLN 41 41 41 GLN GLN C . n C 1 42 ARG 42 42 42 ARG ARG C . n C 1 43 LEU 43 43 43 LEU LEU C . n C 1 44 ILE 44 44 44 ILE ILE C . n C 1 45 PHE 45 45 45 PHE PHE C . n C 1 46 ALA 46 46 46 ALA ALA C . n C 1 47 GLY 47 47 47 GLY GLY C . n C 1 48 CYS 48 48 48 CYS CYS C . n C 1 49 GLN 49 49 49 GLN GLN C . n C 1 50 LEU 50 50 50 LEU LEU C . n C 1 51 GLU 51 51 51 GLU GLU C . n C 1 52 ASP 52 52 52 ASP ASP C . n C 1 53 GLY 53 53 53 GLY GLY C . n C 1 54 ARG 54 54 54 ARG ARG C . n C 1 55 THR 55 55 55 THR THR C . n C 1 56 LEU 56 56 56 LEU LEU C . n C 1 57 SER 57 57 57 SER SER C . n C 1 58 ASP 58 58 58 ASP ASP C . n C 1 59 TYR 59 59 59 TYR TYR C . n C 1 60 ASN 60 60 60 ASN ASN C . n C 1 61 ILE 61 61 61 ILE ILE C . n C 1 62 GLN 62 62 62 GLN GLN C . n C 1 63 LYS 63 63 63 LYS LYS C . n C 1 64 GLU 64 64 64 GLU GLU C . n C 1 65 SER 65 65 65 SER SER C . n C 1 66 THR 66 66 66 THR THR C . n C 1 67 LEU 67 67 67 LEU LEU C . n C 1 68 HIS 68 68 68 HIS HIS C . n C 1 69 LEU 69 69 69 LEU LEU C . n C 1 70 VAL 70 70 70 VAL VAL C . n C 1 71 LEU 71 71 71 LEU LEU C . n C 1 72 ARG 72 72 72 ARG ARG C . n C 1 73 LEU 73 73 73 LEU LEU C . n C 1 74 ARG 74 74 74 ARG ARG C . n C 1 75 GLY 75 75 75 GLY GLY C . n C 1 76 GLY 76 76 76 GLY GLY C . n D 2 1 MET 1 1 1 MET MET D . n D 2 2 GLN 2 2 2 GLN GLN D . n D 2 3 ILE 3 3 3 ILE ILE D . n D 2 4 PHE 4 4 4 PHE PHE D . n D 2 5 VAL 5 5 5 VAL VAL D . n D 2 6 LYS 6 6 6 LYS LYS D . n D 2 7 THR 7 7 7 THR THR D . n D 2 8 LEU 8 8 8 LEU LEU D . n D 2 9 THR 9 9 9 THR THR D . n D 2 10 GLY 10 10 10 GLY GLY D . n D 2 11 LYS 11 11 11 LYS LYS D . n D 2 12 THR 12 12 12 THR THR D . n D 2 13 ILE 13 13 13 ILE ILE D . n D 2 14 THR 14 14 14 THR THR D . n D 2 15 LEU 15 15 15 LEU LEU D . n D 2 16 GLU 16 16 16 GLU GLU D . n D 2 17 VAL 17 17 17 VAL VAL D . n D 2 18 GLU 18 18 18 GLU GLU D . n D 2 19 PRO 19 19 19 PRO PRO D . n D 2 20 SER 20 20 20 SER SER D . n D 2 21 ASP 21 21 21 ASP ASP D . n D 2 22 THR 22 22 22 THR THR D . n D 2 23 ILE 23 23 23 ILE ILE D . n D 2 24 GLU 24 24 24 GLU GLU D . n D 2 25 ASN 25 25 25 ASN ASN D . n D 2 26 VAL 26 26 26 VAL VAL D . n D 2 27 LYS 27 27 27 LYS LYS D . n D 2 28 ALA 28 28 28 ALA ALA D . n D 2 29 LYS 29 29 29 LYS LYS D . n D 2 30 ILE 30 30 30 ILE ILE D . n D 2 31 GLN 31 31 31 GLN GLN D . n D 2 32 ASP 32 32 32 ASP ASP D . n D 2 33 LYS 33 33 33 LYS LYS D . n D 2 34 GLU 34 34 34 GLU GLU D . n D 2 35 GLY 35 35 35 GLY GLY D . n D 2 36 ILE 36 36 36 ILE ILE D . n D 2 37 PRO 37 37 37 PRO PRO D . n D 2 38 PRO 38 38 38 PRO PRO D . n D 2 39 ASP 39 39 39 ASP ASP D . n D 2 40 GLN 40 40 40 GLN GLN D . n D 2 41 GLN 41 41 41 GLN GLN D . n D 2 42 ARG 42 42 42 ARG ARG D . n D 2 43 LEU 43 43 43 LEU LEU D . n D 2 44 ILE 44 44 44 ILE ILE D . n D 2 45 PHE 45 45 45 PHE PHE D . n D 2 46 ALA 46 46 46 ALA ALA D . n D 2 47 GLY 47 47 47 GLY GLY D . n D 2 48 LYS 48 48 48 LYS LYS D . n D 2 49 GLN 49 49 49 GLN GLN D . n D 2 50 LEU 50 50 50 LEU LEU D . n D 2 51 GLU 51 51 51 GLU GLU D . n D 2 52 ASP 52 52 52 ASP ASP D . n D 2 53 GLY 53 53 53 GLY GLY D . n D 2 54 ARG 54 54 54 ARG ARG D . n D 2 55 THR 55 55 55 THR THR D . n D 2 56 LEU 56 56 56 LEU LEU D . n D 2 57 SER 57 57 57 SER SER D . n D 2 58 ASP 58 58 58 ASP ASP D . n D 2 59 TYR 59 59 59 TYR TYR D . n D 2 60 ASN 60 60 60 ASN ASN D . n D 2 61 ILE 61 61 61 ILE ILE D . n D 2 62 GLN 62 62 62 GLN GLN D . n D 2 63 LYS 63 63 63 LYS LYS D . n D 2 64 GLU 64 64 64 GLU GLU D . n D 2 65 SER 65 65 65 SER SER D . n D 2 66 THR 66 66 66 THR THR D . n D 2 67 LEU 67 67 67 LEU LEU D . n D 2 68 HIS 68 68 68 HIS HIS D . n D 2 69 LEU 69 69 69 LEU LEU D . n D 2 70 VAL 70 70 70 VAL VAL D . n D 2 71 LEU 71 71 71 LEU LEU D . n D 2 72 ARG 72 72 72 ARG ARG D . n D 2 73 LEU 73 73 73 LEU LEU D . n D 2 74 ARG 74 74 74 ARG ARG D . n D 2 75 GLY 75 75 75 GLY GLY D . n D 2 76 GLY 76 76 76 GLY GLY D . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email kkatonmr@ims.ac.jp _pdbx_contact_author.name_first Koichi _pdbx_contact_author.name_last Kato _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7187-9612 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 101 101 HOH HOH A . E 3 HOH 2 102 102 HOH HOH A . E 3 HOH 3 103 103 HOH HOH A . E 3 HOH 4 104 104 HOH HOH A . E 3 HOH 5 105 105 HOH HOH A . E 3 HOH 6 106 106 HOH HOH A . E 3 HOH 7 107 107 HOH HOH A . E 3 HOH 8 108 108 HOH HOH A . E 3 HOH 9 109 109 HOH HOH A . E 3 HOH 10 110 110 HOH HOH A . E 3 HOH 11 111 111 HOH HOH A . E 3 HOH 12 112 112 HOH HOH A . E 3 HOH 13 113 113 HOH HOH A . E 3 HOH 14 114 114 HOH HOH A . E 3 HOH 15 115 115 HOH HOH A . E 3 HOH 16 116 116 HOH HOH A . E 3 HOH 17 117 117 HOH HOH A . E 3 HOH 18 118 118 HOH HOH A . E 3 HOH 19 119 119 HOH HOH A . E 3 HOH 20 120 120 HOH HOH A . E 3 HOH 21 121 121 HOH HOH A . E 3 HOH 22 122 122 HOH HOH A . E 3 HOH 23 123 123 HOH HOH A . E 3 HOH 24 124 124 HOH HOH A . E 3 HOH 25 125 125 HOH HOH A . E 3 HOH 26 126 126 HOH HOH A . E 3 HOH 27 127 127 HOH HOH A . E 3 HOH 28 128 128 HOH HOH A . E 3 HOH 29 129 129 HOH HOH A . E 3 HOH 30 130 130 HOH HOH A . E 3 HOH 31 131 131 HOH HOH A . E 3 HOH 32 132 132 HOH HOH A . E 3 HOH 33 133 133 HOH HOH A . E 3 HOH 34 134 134 HOH HOH A . E 3 HOH 35 135 135 HOH HOH A . E 3 HOH 36 136 136 HOH HOH A . E 3 HOH 37 137 137 HOH HOH A . E 3 HOH 38 138 138 HOH HOH A . E 3 HOH 39 139 139 HOH HOH A . E 3 HOH 40 140 140 HOH HOH A . E 3 HOH 41 141 141 HOH HOH A . E 3 HOH 42 142 142 HOH HOH A . E 3 HOH 43 143 143 HOH HOH A . E 3 HOH 44 144 144 HOH HOH A . F 3 HOH 1 101 101 HOH HOH B . F 3 HOH 2 102 102 HOH HOH B . F 3 HOH 3 103 103 HOH HOH B . F 3 HOH 4 104 104 HOH HOH B . F 3 HOH 5 105 105 HOH HOH B . F 3 HOH 6 106 106 HOH HOH B . F 3 HOH 7 107 107 HOH HOH B . F 3 HOH 8 108 108 HOH HOH B . F 3 HOH 9 109 109 HOH HOH B . F 3 HOH 10 110 110 HOH HOH B . F 3 HOH 11 111 111 HOH HOH B . F 3 HOH 12 112 112 HOH HOH B . F 3 HOH 13 113 113 HOH HOH B . F 3 HOH 14 114 114 HOH HOH B . F 3 HOH 15 115 115 HOH HOH B . F 3 HOH 16 116 116 HOH HOH B . F 3 HOH 17 117 117 HOH HOH B . F 3 HOH 18 118 118 HOH HOH B . F 3 HOH 19 119 119 HOH HOH B . F 3 HOH 20 120 120 HOH HOH B . F 3 HOH 21 121 121 HOH HOH B . F 3 HOH 22 122 122 HOH HOH B . F 3 HOH 23 123 123 HOH HOH B . F 3 HOH 24 124 124 HOH HOH B . F 3 HOH 25 125 125 HOH HOH B . F 3 HOH 26 126 126 HOH HOH B . F 3 HOH 27 127 127 HOH HOH B . F 3 HOH 28 128 128 HOH HOH B . F 3 HOH 29 129 129 HOH HOH B . F 3 HOH 30 130 130 HOH HOH B . F 3 HOH 31 131 131 HOH HOH B . F 3 HOH 32 132 132 HOH HOH B . F 3 HOH 33 133 133 HOH HOH B . F 3 HOH 34 134 134 HOH HOH B . F 3 HOH 35 135 135 HOH HOH B . F 3 HOH 36 136 136 HOH HOH B . F 3 HOH 37 137 137 HOH HOH B . F 3 HOH 38 138 138 HOH HOH B . F 3 HOH 39 139 139 HOH HOH B . F 3 HOH 40 140 140 HOH HOH B . F 3 HOH 41 141 141 HOH HOH B . F 3 HOH 42 142 142 HOH HOH B . F 3 HOH 43 143 143 HOH HOH B . F 3 HOH 44 144 144 HOH HOH B . F 3 HOH 45 145 145 HOH HOH B . F 3 HOH 46 146 146 HOH HOH B . F 3 HOH 47 147 147 HOH HOH B . F 3 HOH 48 148 148 HOH HOH B . F 3 HOH 49 149 149 HOH HOH B . F 3 HOH 50 150 150 HOH HOH B . G 3 HOH 1 101 101 HOH HOH C . G 3 HOH 2 102 102 HOH HOH C . G 3 HOH 3 103 103 HOH HOH C . G 3 HOH 4 104 104 HOH HOH C . G 3 HOH 5 105 105 HOH HOH C . G 3 HOH 6 106 106 HOH HOH C . G 3 HOH 7 107 107 HOH HOH C . G 3 HOH 8 108 108 HOH HOH C . G 3 HOH 9 109 109 HOH HOH C . G 3 HOH 10 110 110 HOH HOH C . G 3 HOH 11 111 111 HOH HOH C . G 3 HOH 12 112 112 HOH HOH C . G 3 HOH 13 113 113 HOH HOH C . G 3 HOH 14 115 115 HOH HOH C . G 3 HOH 15 116 116 HOH HOH C . G 3 HOH 16 117 117 HOH HOH C . G 3 HOH 17 118 118 HOH HOH C . G 3 HOH 18 119 119 HOH HOH C . G 3 HOH 19 120 120 HOH HOH C . G 3 HOH 20 121 121 HOH HOH C . G 3 HOH 21 122 122 HOH HOH C . G 3 HOH 22 123 123 HOH HOH C . G 3 HOH 23 124 124 HOH HOH C . G 3 HOH 24 125 125 HOH HOH C . G 3 HOH 25 126 126 HOH HOH C . G 3 HOH 26 127 127 HOH HOH C . G 3 HOH 27 128 128 HOH HOH C . G 3 HOH 28 129 129 HOH HOH C . G 3 HOH 29 130 130 HOH HOH C . G 3 HOH 30 131 131 HOH HOH C . G 3 HOH 31 132 132 HOH HOH C . G 3 HOH 32 133 133 HOH HOH C . G 3 HOH 33 134 134 HOH HOH C . G 3 HOH 34 135 135 HOH HOH C . G 3 HOH 35 136 136 HOH HOH C . G 3 HOH 36 137 137 HOH HOH C . G 3 HOH 37 139 139 HOH HOH C . H 3 HOH 1 102 102 HOH HOH D . H 3 HOH 2 103 103 HOH HOH D . H 3 HOH 3 104 104 HOH HOH D . H 3 HOH 4 105 105 HOH HOH D . H 3 HOH 5 106 106 HOH HOH D . H 3 HOH 6 107 107 HOH HOH D . H 3 HOH 7 108 108 HOH HOH D . H 3 HOH 8 109 109 HOH HOH D . H 3 HOH 9 110 110 HOH HOH D . H 3 HOH 10 111 111 HOH HOH D . H 3 HOH 11 112 112 HOH HOH D . H 3 HOH 12 113 113 HOH HOH D . H 3 HOH 13 114 114 HOH HOH D . H 3 HOH 14 115 115 HOH HOH D . H 3 HOH 15 116 116 HOH HOH D . H 3 HOH 16 117 117 HOH HOH D . H 3 HOH 17 118 118 HOH HOH D . H 3 HOH 18 119 119 HOH HOH D . H 3 HOH 19 120 120 HOH HOH D . H 3 HOH 20 121 121 HOH HOH D . H 3 HOH 21 122 122 HOH HOH D . H 3 HOH 22 123 123 HOH HOH D . H 3 HOH 23 124 124 HOH HOH D . H 3 HOH 24 125 125 HOH HOH D . H 3 HOH 25 126 126 HOH HOH D . H 3 HOH 26 127 127 HOH HOH D . H 3 HOH 27 128 128 HOH HOH D . H 3 HOH 28 129 129 HOH HOH D . H 3 HOH 29 130 130 HOH HOH D . H 3 HOH 30 131 131 HOH HOH D . H 3 HOH 31 132 132 HOH HOH D . H 3 HOH 32 133 133 HOH HOH D . H 3 HOH 33 134 134 HOH HOH D . H 3 HOH 34 135 135 HOH HOH D . H 3 HOH 35 136 136 HOH HOH D . H 3 HOH 36 137 137 HOH HOH D . H 3 HOH 37 138 138 HOH HOH D . H 3 HOH 38 139 139 HOH HOH D . H 3 HOH 39 140 140 HOH HOH D . H 3 HOH 40 141 141 HOH HOH D . H 3 HOH 41 142 142 HOH HOH D . H 3 HOH 42 143 143 HOH HOH D . H 3 HOH 43 144 144 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1520 ? 1 MORE -7 ? 1 'SSA (A^2)' 7750 ? 2 'ABSA (A^2)' 1530 ? 2 MORE -6 ? 2 'SSA (A^2)' 7720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-04-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C A GLY 76 ? ? NZ B LYS 48 ? ? 1.35 2 1 C C GLY 76 ? ? NZ D LYS 48 ? ? 1.35 3 1 O C GLY 76 ? ? NZ D LYS 48 ? ? 2.13 4 1 O A GLY 76 ? ? NZ B LYS 48 ? ? 2.14 5 1 O A HOH 114 ? ? O A HOH 121 ? ? 2.15 6 1 O C HOH 109 ? ? O C HOH 127 ? ? 2.16 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan JP18H05229 1 'Japan Science and Technology' Japan JPMJPR22AC 2 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AAR _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'Covalent bond via isopeptide bond between K48 (A or C) and G76 (B or D), respectively' #